Wall clock time and date at job start Tue Mar 31 2020 14:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47415 * 174.90782 * 3 2 1 5 5 N 1.46897 * 109.47522 * 179.97438 * 4 3 2 6 6 C 1.48528 * 111.00224 * 290.12653 * 5 4 3 7 7 C 1.54316 * 104.67505 * 200.80324 * 6 5 4 8 8 H 1.08997 * 111.82704 * 262.42843 * 7 6 5 9 9 C 1.54166 * 108.86228 * 137.49265 * 7 6 5 10 10 C 1.54853 * 104.32040 * 223.67774 * 9 7 6 11 11 C 1.53972 * 103.14429 * 37.49699 * 10 9 7 12 12 C 1.54161 * 104.74375 * 322.98095 * 11 10 9 13 13 N 1.46505 * 111.79360 * 260.03931 * 12 11 10 14 14 C 1.34774 * 119.99709 * 299.22416 * 13 12 11 15 15 O 1.21279 * 120.00079 * 0.02562 * 14 13 12 16 16 C 1.50700 * 119.99776 * 180.02562 * 14 13 12 17 17 S 1.81004 * 109.46969 * 179.97438 * 16 14 13 18 18 C 1.76200 * 99.99884 * 179.97438 * 17 16 14 19 19 H 1.08002 * 120.00211 * 0.02562 * 18 17 16 20 20 C 1.38798 * 120.00281 * 179.97438 * 18 17 16 21 21 N 1.31633 * 120.00370 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 119.99801 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.46845 * 269.99984 * 22 20 18 24 24 H 1.48503 * 109.47399 * 29.99474 * 22 20 18 25 25 H 1.48498 * 109.47295 * 150.00081 * 22 20 18 26 26 C 1.48530 * 111.00149 * 174.71946 * 5 4 3 27 27 H 4.44656 * 5.63357 * 179.97438 * 4 1 2 28 28 H 1.09004 * 109.47332 * 54.91375 * 3 2 1 29 29 H 1.09002 * 109.47272 * 294.91024 * 3 2 1 30 30 H 1.09002 * 109.47011 * 59.99605 * 4 3 2 31 31 H 1.09002 * 109.47098 * 300.00348 * 4 3 2 32 32 H 1.09005 * 110.39137 * 82.00678 * 6 5 4 33 33 H 1.08996 * 110.49544 * 319.65826 * 6 5 4 34 34 H 1.08997 * 110.46521 * 342.38263 * 9 7 6 35 35 H 1.08998 * 110.46505 * 104.97019 * 9 7 6 36 36 H 1.09003 * 110.75722 * 156.49775 * 10 9 7 37 37 H 1.08998 * 110.75593 * 279.68874 * 10 9 7 38 38 H 1.09007 * 111.32522 * 203.58785 * 11 10 9 39 39 H 1.08994 * 109.19219 * 81.29896 * 11 10 9 40 40 H 0.96996 * 119.99874 * 119.22663 * 13 12 11 41 41 H 1.08997 * 109.47484 * 59.99659 * 16 14 13 42 42 H 1.09001 * 109.47155 * 299.99489 * 16 14 13 43 43 H 0.96998 * 119.99582 * 180.02562 * 21 20 18 44 44 H 1.09007 * 110.39276 * 40.39769 * 26 5 4 45 45 H 1.08999 * 110.40121 * 277.99690 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1554 1.4377 -0.1280 5 7 4.6244 1.4384 -0.1274 6 6 5.1563 1.0792 1.2120 7 6 6.5989 1.6270 1.2195 8 1 7.3277 0.8529 0.9793 9 6 6.8723 2.2924 2.5831 10 6 7.6050 3.6092 2.2266 11 6 6.8946 4.0680 0.9400 12 6 6.5987 2.7659 0.1695 13 7 7.5782 2.5286 -0.8938 14 6 7.7150 3.4202 -1.8952 15 8 7.0277 4.4192 -1.9157 16 6 8.7221 3.1758 -2.9893 17 16 8.6664 4.5411 -4.1764 18 6 9.9063 4.0110 -5.3106 19 1 10.4313 3.0825 -5.1417 20 6 10.2076 4.7863 -6.4217 21 7 11.1336 4.3901 -7.2693 22 14 9.2991 6.3921 -6.7143 23 1 8.0874 6.1331 -7.5328 24 1 8.8993 6.9795 -5.4103 25 1 10.1882 7.3401 -7.4326 26 6 5.1561 2.8026 -0.3771 27 1 -1.0503 -0.0004 -0.0002 28 1 3.0096 -0.5899 -0.8409 29 1 3.0095 -0.4320 0.9321 30 1 2.7917 2.0283 0.7128 31 1 2.7918 1.8703 -1.0601 32 1 5.1603 -0.0032 1.3413 33 1 4.5660 1.5525 1.9966 34 1 5.9355 2.5050 3.0980 35 1 7.5097 1.6558 3.1968 36 1 7.4888 4.3438 3.0235 37 1 8.6600 3.4223 2.0264 38 1 7.5320 4.7247 0.3478 39 1 5.9659 4.5737 1.2043 40 1 8.1281 1.7297 -0.8772 41 1 8.4855 2.2418 -3.4989 42 1 9.7203 3.1108 -2.5564 43 1 11.3443 4.9322 -8.0455 44 1 4.5652 3.5447 0.1599 45 1 5.1599 3.0193 -1.4453 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111599900.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:39 Heat of formation + Delta-G solvation = 16.643492 kcal Electronic energy + Delta-G solvation = -24850.163518 eV Core-core repulsion = 21380.836423 eV Total energy + Delta-G solvation = -3469.327096 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.95716 -38.56333 -36.63134 -34.19791 -33.59313 -32.42017 -30.89455 -30.63029 -29.09879 -27.23466 -25.92656 -25.58428 -23.69822 -22.05726 -20.68780 -20.14232 -19.33270 -18.34417 -17.86275 -17.01778 -16.15521 -15.94234 -15.46937 -15.41888 -15.04263 -14.91645 -14.56460 -14.03578 -13.96884 -13.78869 -13.45295 -13.17415 -12.89328 -12.78093 -12.64355 -12.33075 -12.01604 -11.80619 -11.59720 -11.37888 -11.26097 -11.23823 -11.07392 -10.99586 -10.94747 -10.77851 -10.57024 -10.48731 -10.34591 -9.83956 -9.38383 -8.99280 -8.87814 -8.72545 -8.47740 -6.89150 -6.27302 -3.98487 2.49108 2.56228 2.78796 3.01147 3.31648 3.35410 3.51381 3.61883 3.67824 4.01737 4.17090 4.29605 4.34482 4.52053 4.73630 4.75918 4.86512 4.88087 4.99743 5.06655 5.11793 5.11944 5.19244 5.22262 5.30376 5.38887 5.46553 5.53216 5.57181 5.61515 5.65351 5.69753 5.75213 5.79501 5.81479 5.86086 5.99836 6.05603 6.09595 6.13417 6.52371 6.72298 6.74962 7.33053 7.69234 7.95909 8.43695 8.55139 9.19013 10.82006 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014275 B = 0.002983 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.015727 B = 9385.646796 C =10610.420155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.184 4.184 3 C -0.008 4.008 4 C 0.050 3.950 5 N -0.509 5.509 6 C 0.034 3.966 7 C -0.096 4.096 8 H 0.094 0.906 9 C -0.117 4.117 10 C -0.125 4.125 11 C -0.125 4.125 12 C 0.181 3.819 13 N -0.716 5.716 14 C 0.533 3.467 15 O -0.517 6.517 16 C -0.124 4.124 17 S -0.141 6.141 18 C -0.520 4.520 19 H 0.088 0.912 20 C 0.095 3.905 21 N -0.881 5.881 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.235 1.235 25 H -0.275 1.275 26 C 0.034 3.966 27 H 0.217 0.783 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.040 0.960 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.049 0.951 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.400 0.600 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.270 0.730 44 H 0.053 0.947 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.851 -8.760 22.120 27.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.185 4.185 3 C -0.045 4.045 4 C -0.078 4.078 5 N -0.233 5.233 6 C -0.094 4.094 7 C -0.115 4.115 8 H 0.112 0.888 9 C -0.155 4.155 10 C -0.162 4.162 11 C -0.163 4.163 12 C 0.093 3.907 13 N -0.370 5.370 14 C 0.320 3.680 15 O -0.392 6.392 16 C -0.275 4.275 17 S 0.085 5.915 18 C -0.668 4.668 19 H 0.106 0.894 20 C -0.114 4.114 21 N -0.518 5.518 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.159 1.159 25 H -0.200 1.200 26 C -0.094 4.094 27 H 0.233 0.767 28 H 0.115 0.885 29 H 0.103 0.897 30 H 0.058 0.942 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.103 0.897 39 H 0.088 0.912 40 H 0.235 0.765 41 H 0.114 0.886 42 H 0.114 0.886 43 H 0.080 0.920 44 H 0.071 0.929 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -14.733 -7.436 21.483 27.090 hybrid contribution 0.312 -0.406 0.155 0.535 sum -14.420 -7.842 21.639 27.160 Atomic orbital electron populations 1.24920 0.95979 1.00503 1.01472 1.23096 0.94517 1.00652 1.00205 1.18643 0.84239 0.97800 1.03797 1.22179 0.88013 0.95636 1.02006 1.65398 1.07209 1.24254 1.26422 1.23345 0.94180 1.01291 0.90579 1.22737 0.97325 0.96886 0.94585 0.88762 1.22478 1.00749 0.96723 0.95565 1.22382 0.99826 0.96674 0.97334 1.22553 1.01579 0.96563 0.95654 1.21318 0.88122 0.94676 0.86589 1.45888 1.40733 1.25538 1.24796 1.20218 0.83443 0.82619 0.81755 1.90685 1.45160 1.27369 1.75966 1.23286 1.00614 1.05230 0.98355 1.84750 1.53250 1.27852 1.25642 1.22325 1.22712 1.11799 1.09967 0.89418 1.24718 0.94290 0.97878 0.94479 1.69942 1.30375 1.38586 1.12865 0.86732 0.80280 0.83622 0.81187 1.19238 1.15925 1.20004 1.23524 0.93748 0.88782 1.03354 0.76660 0.88529 0.89712 0.94216 0.90089 0.89906 0.93268 0.91270 0.91176 0.91320 0.91364 0.89745 0.91180 0.76538 0.88556 0.88621 0.91974 0.92911 0.88649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.78 19.25 29.55 0.57 -1.21 16 2 C -0.18 -1.74 13.34 -37.13 -0.50 -2.23 16 3 C -0.01 -0.07 5.76 -29.52 -0.17 -0.24 16 4 C 0.05 0.47 4.76 -3.83 -0.02 0.45 16 5 N -0.51 -5.16 5.37 -230.11 -1.24 -6.40 16 6 C 0.03 0.27 5.27 -2.23 -0.01 0.26 16 7 C -0.10 -0.79 3.70 -88.32 -0.33 -1.11 16 8 H 0.09 0.71 7.72 -51.93 -0.40 0.31 16 9 C -0.12 -0.83 6.38 -25.15 -0.16 -0.99 16 10 C -0.12 -1.08 6.86 -25.25 -0.17 -1.25 16 11 C -0.12 -1.42 5.60 -25.62 -0.14 -1.56 16 12 C 0.18 2.01 0.92 -129.52 -0.12 1.89 16 13 N -0.72 -9.01 5.25 -45.49 -0.24 -9.25 16 14 C 0.53 9.13 6.88 -10.99 -0.08 9.05 16 15 O -0.52 -10.47 13.38 5.56 0.07 -10.40 16 16 C -0.12 -2.38 6.16 36.01 0.22 -2.15 16 17 S -0.14 -3.56 18.55 -107.50 -1.99 -5.55 16 18 C -0.52 -15.00 10.04 30.94 0.31 -14.69 16 19 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 20 C 0.09 2.78 5.50 -17.43 -0.10 2.69 16 21 N -0.88 -26.68 13.97 55.49 0.78 -25.90 16 22 Si 0.86 21.85 27.74 -169.99 -4.71 17.13 16 23 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.24 -5.97 6.74 56.52 0.38 -5.59 16 25 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 26 C 0.03 0.42 5.34 -2.23 -0.01 0.40 16 27 H 0.22 1.09 7.80 -54.08 -0.42 0.67 16 28 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.08 0.59 7.25 -51.93 -0.38 0.22 16 30 H 0.04 0.36 7.88 -51.93 -0.41 -0.05 16 31 H 0.08 0.84 8.13 -51.93 -0.42 0.41 16 32 H 0.08 0.56 7.75 -51.93 -0.40 0.16 16 33 H 0.05 0.37 6.87 -51.93 -0.36 0.01 16 34 H 0.07 0.46 7.18 -51.93 -0.37 0.08 16 35 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 1.22 6.66 -51.93 -0.35 0.87 16 39 H 0.07 0.78 7.25 -51.93 -0.38 0.40 16 40 H 0.40 4.08 8.31 -40.82 -0.34 3.74 16 41 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 42 H 0.10 1.71 8.14 -51.92 -0.42 1.29 16 43 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 44 H 0.05 0.62 7.11 -51.93 -0.37 0.25 16 45 H 0.10 1.47 6.79 -51.93 -0.35 1.12 16 LS Contribution 372.86 15.07 5.62 5.62 Total: -1.00 -33.29 372.86 -9.47 -42.77 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -7.06 Total: 2.68 kcal Atomic # 6 Polarization: -10.00 SS G_CDS: -0.70 Total: -10.70 kcal Atomic # 7 Polarization: -40.86 SS G_CDS: -0.70 Total: -41.55 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.07 Total: -10.40 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.71 Total: 17.13 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -1.99 Total: -5.55 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.29 -9.47 -42.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111599900.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.409 kcal (2) G-P(sol) polarization free energy of solvation -33.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds