Wall clock time and date at job start Tue Mar 31 2020 14:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47415 * 174.90782 * 3 2 1 5 5 N 1.46897 * 109.47522 * 179.97438 * 4 3 2 6 6 C 1.48528 * 111.00224 * 290.12653 * 5 4 3 7 7 C 1.54316 * 104.67505 * 200.80324 * 6 5 4 8 8 H 1.08997 * 111.82704 * 262.42843 * 7 6 5 9 9 C 1.54166 * 108.86228 * 137.49265 * 7 6 5 10 10 C 1.54853 * 104.32040 * 223.67774 * 9 7 6 11 11 C 1.53972 * 103.14429 * 37.49699 * 10 9 7 12 12 C 1.54161 * 104.74375 * 322.98095 * 11 10 9 13 13 N 1.46505 * 111.79360 * 260.03931 * 12 11 10 14 14 C 1.34774 * 119.99709 * 299.22416 * 13 12 11 15 15 O 1.21279 * 120.00079 * 0.02562 * 14 13 12 16 16 C 1.50700 * 119.99776 * 180.02562 * 14 13 12 17 17 S 1.81004 * 109.46969 * 179.97438 * 16 14 13 18 18 C 1.76200 * 99.99884 * 179.97438 * 17 16 14 19 19 H 1.08002 * 120.00211 * 0.02562 * 18 17 16 20 20 C 1.38798 * 120.00281 * 179.97438 * 18 17 16 21 21 N 1.31633 * 120.00370 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 119.99801 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.46845 * 269.99984 * 22 20 18 24 24 H 1.48503 * 109.47399 * 29.99474 * 22 20 18 25 25 H 1.48498 * 109.47295 * 150.00081 * 22 20 18 26 26 C 1.48530 * 111.00149 * 174.71946 * 5 4 3 27 27 H 4.44656 * 5.63357 * 179.97438 * 4 1 2 28 28 H 1.09004 * 109.47332 * 54.91375 * 3 2 1 29 29 H 1.09002 * 109.47272 * 294.91024 * 3 2 1 30 30 H 1.09002 * 109.47011 * 59.99605 * 4 3 2 31 31 H 1.09002 * 109.47098 * 300.00348 * 4 3 2 32 32 H 1.09005 * 110.39137 * 82.00678 * 6 5 4 33 33 H 1.08996 * 110.49544 * 319.65826 * 6 5 4 34 34 H 1.08997 * 110.46521 * 342.38263 * 9 7 6 35 35 H 1.08998 * 110.46505 * 104.97019 * 9 7 6 36 36 H 1.09003 * 110.75722 * 156.49775 * 10 9 7 37 37 H 1.08998 * 110.75593 * 279.68874 * 10 9 7 38 38 H 1.09007 * 111.32522 * 203.58785 * 11 10 9 39 39 H 1.08994 * 109.19219 * 81.29896 * 11 10 9 40 40 H 0.96996 * 119.99874 * 119.22663 * 13 12 11 41 41 H 1.08997 * 109.47484 * 59.99659 * 16 14 13 42 42 H 1.09001 * 109.47155 * 299.99489 * 16 14 13 43 43 H 0.96998 * 119.99582 * 180.02562 * 21 20 18 44 44 H 1.09007 * 110.39276 * 40.39769 * 26 5 4 45 45 H 1.08999 * 110.40121 * 277.99690 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1554 1.4377 -0.1280 5 7 4.6244 1.4384 -0.1274 6 6 5.1563 1.0792 1.2120 7 6 6.5989 1.6270 1.2195 8 1 7.3277 0.8529 0.9793 9 6 6.8723 2.2924 2.5831 10 6 7.6050 3.6092 2.2266 11 6 6.8946 4.0680 0.9400 12 6 6.5987 2.7659 0.1695 13 7 7.5782 2.5286 -0.8938 14 6 7.7150 3.4202 -1.8952 15 8 7.0277 4.4192 -1.9157 16 6 8.7221 3.1758 -2.9893 17 16 8.6664 4.5411 -4.1764 18 6 9.9063 4.0110 -5.3106 19 1 10.4313 3.0825 -5.1417 20 6 10.2076 4.7863 -6.4217 21 7 11.1336 4.3901 -7.2693 22 14 9.2991 6.3921 -6.7143 23 1 8.0874 6.1331 -7.5328 24 1 8.8993 6.9795 -5.4103 25 1 10.1882 7.3401 -7.4326 26 6 5.1561 2.8026 -0.3771 27 1 -1.0503 -0.0004 -0.0002 28 1 3.0096 -0.5899 -0.8409 29 1 3.0095 -0.4320 0.9321 30 1 2.7917 2.0283 0.7128 31 1 2.7918 1.8703 -1.0601 32 1 5.1603 -0.0032 1.3413 33 1 4.5660 1.5525 1.9966 34 1 5.9355 2.5050 3.0980 35 1 7.5097 1.6558 3.1968 36 1 7.4888 4.3438 3.0235 37 1 8.6600 3.4223 2.0264 38 1 7.5320 4.7247 0.3478 39 1 5.9659 4.5737 1.2043 40 1 8.1281 1.7297 -0.8772 41 1 8.4855 2.2418 -3.4989 42 1 9.7203 3.1108 -2.5564 43 1 11.3443 4.9322 -8.0455 44 1 4.5652 3.5447 0.1599 45 1 5.1599 3.0193 -1.4453 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111599900.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:38 Heat of formation + Delta-G solvation = -6.205431 kcal Electronic energy + Delta-G solvation = -24851.154322 eV Core-core repulsion = 21380.836423 eV Total energy + Delta-G solvation = -3470.317899 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.89235 -39.78389 -37.41174 -34.87756 -34.77036 -34.65274 -31.73308 -31.56860 -30.26262 -28.17912 -27.78736 -26.67745 -24.47718 -23.00879 -21.47684 -21.12673 -20.37881 -19.78182 -18.96240 -18.11384 -17.52080 -17.10642 -16.75983 -16.47180 -16.14125 -16.12200 -15.73145 -15.42096 -14.99869 -14.79555 -14.73014 -14.46840 -13.95743 -13.83199 -13.69916 -13.35283 -13.16503 -13.05932 -13.00379 -12.79356 -12.51135 -12.36282 -12.27798 -11.97236 -11.86503 -11.78938 -11.62755 -11.47632 -11.17395 -11.17298 -10.99422 -10.80878 -10.52701 -10.02982 -9.50680 -8.98305 -8.51637 -6.21689 0.99525 1.30809 1.46428 1.56068 1.62355 1.82028 1.90343 2.22961 2.27336 2.72641 2.86542 2.87792 3.24809 3.45685 3.64882 3.82563 3.88314 4.02341 4.11956 4.15801 4.24310 4.29795 4.37991 4.42397 4.45356 4.48441 4.50804 4.58999 4.73633 4.77018 4.87704 4.92994 4.98036 4.99375 5.03036 5.13238 5.16899 5.21557 5.26436 5.44603 5.62018 5.70831 5.77891 5.97066 6.11532 6.54510 6.69058 6.93636 7.26491 8.60890 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014275 B = 0.002983 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.015727 B = 9385.646796 C =10610.420155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.219 4.219 3 C -0.001 4.001 4 C 0.054 3.946 5 N -0.516 5.516 6 C 0.035 3.965 7 C -0.088 4.088 8 H 0.109 0.891 9 C -0.108 4.108 10 C -0.120 4.120 11 C -0.126 4.126 12 C 0.174 3.826 13 N -0.695 5.695 14 C 0.538 3.462 15 O -0.553 6.553 16 C -0.111 4.111 17 S -0.173 6.173 18 C -0.528 4.528 19 H 0.061 0.939 20 C 0.045 3.955 21 N -0.917 5.917 22 Si 0.915 3.085 23 H -0.263 1.263 24 H -0.236 1.236 25 H -0.259 1.259 26 C 0.038 3.962 27 H 0.243 0.757 28 H 0.093 0.907 29 H 0.102 0.898 30 H 0.043 0.957 31 H 0.061 0.939 32 H 0.103 0.897 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.049 0.951 39 H 0.068 0.932 40 H 0.415 0.585 41 H 0.108 0.892 42 H 0.111 0.889 43 H 0.277 0.723 44 H 0.051 0.949 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.879 -9.913 24.712 30.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.220 4.220 3 C -0.037 4.037 4 C -0.074 4.074 5 N -0.240 5.240 6 C -0.092 4.092 7 C -0.107 4.107 8 H 0.127 0.873 9 C -0.146 4.146 10 C -0.158 4.158 11 C -0.165 4.165 12 C 0.087 3.913 13 N -0.348 5.348 14 C 0.323 3.677 15 O -0.430 6.430 16 C -0.262 4.262 17 S 0.054 5.946 18 C -0.676 4.676 19 H 0.079 0.921 20 C -0.161 4.161 21 N -0.556 5.556 22 Si 0.737 3.263 23 H -0.188 1.188 24 H -0.160 1.160 25 H -0.183 1.183 26 C -0.091 4.091 27 H 0.259 0.741 28 H 0.111 0.889 29 H 0.120 0.880 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.121 0.879 33 H 0.078 0.922 34 H 0.097 0.903 35 H 0.110 0.890 36 H 0.097 0.903 37 H 0.084 0.916 38 H 0.068 0.932 39 H 0.087 0.913 40 H 0.252 0.748 41 H 0.126 0.874 42 H 0.129 0.871 43 H 0.086 0.914 44 H 0.069 0.931 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.749 -8.634 24.106 30.061 hybrid contribution 0.580 -0.152 -0.572 0.828 sum -15.169 -8.786 23.534 29.345 Atomic orbital electron populations 1.25720 0.96943 0.99293 1.00431 1.23546 0.95373 1.01789 1.01261 1.18582 0.83898 0.96772 1.04487 1.22118 0.87606 0.96533 1.01166 1.65371 1.07657 1.22648 1.28329 1.23460 0.93749 1.02593 0.89426 1.22782 0.98043 0.95912 0.93979 0.87282 1.22463 1.01411 0.95703 0.94983 1.22363 0.99499 0.97927 0.95964 1.22514 1.01202 0.96064 0.96731 1.21544 0.86907 0.96271 0.86598 1.45686 1.40563 1.24820 1.23694 1.19842 0.82721 0.82910 0.82182 1.90678 1.46435 1.29066 1.76858 1.23274 1.02450 1.02861 0.97639 1.84662 1.51871 1.31335 1.26735 1.22474 1.23248 1.10873 1.10993 0.92056 1.25571 0.95079 1.01077 0.94345 1.70020 1.31744 1.40162 1.13630 0.85862 0.79375 0.80017 0.81072 1.18808 1.16032 1.18322 1.23344 0.94743 0.90108 1.00905 0.74059 0.88925 0.87995 0.93848 0.92023 0.87892 0.92215 0.90299 0.88999 0.90321 0.91588 0.93224 0.91323 0.74794 0.87375 0.87075 0.91387 0.93109 0.92510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.15 19.25 74.32 1.43 -1.72 16 2 C -0.22 -3.87 13.34 31.12 0.42 -3.45 16 3 C 0.00 -0.01 5.76 28.79 0.17 0.16 16 4 C 0.05 0.97 4.76 86.30 0.41 1.38 16 5 N -0.52 -9.77 5.37 -881.92 -4.74 -14.50 16 6 C 0.04 0.44 5.27 86.43 0.46 0.90 16 7 C -0.09 -1.15 3.70 -9.30 -0.03 -1.19 16 8 H 0.11 1.17 7.72 -2.39 -0.02 1.15 16 9 C -0.11 -1.11 6.38 31.62 0.20 -0.91 16 10 C -0.12 -1.79 6.86 31.56 0.22 -1.58 16 11 C -0.13 -2.79 5.60 31.32 0.18 -2.62 16 12 C 0.17 3.66 0.92 5.09 0.00 3.66 16 13 N -0.69 -16.75 5.25 -416.21 -2.18 -18.93 16 14 C 0.54 18.41 6.88 87.66 0.60 19.01 16 15 O -0.55 -22.94 13.38 -3.03 -0.04 -22.98 16 16 C -0.11 -4.24 6.16 71.24 0.44 -3.80 16 17 S -0.17 -8.78 18.55 -56.49 -1.05 -9.83 16 18 C -0.53 -31.06 10.04 67.95 0.68 -30.38 16 19 H 0.06 3.80 8.03 -2.91 -0.02 3.78 16 20 C 0.04 2.64 5.50 84.86 0.47 3.11 16 21 N -0.92 -56.38 13.97 21.65 0.30 -56.07 16 22 Si 0.91 45.51 27.74 68.60 1.90 47.41 16 23 H -0.26 -12.82 7.11 99.48 0.71 -12.11 16 24 H -0.24 -11.72 6.74 99.48 0.67 -11.05 16 25 H -0.26 -12.06 7.11 99.48 0.71 -11.36 16 26 C 0.04 0.92 5.34 86.43 0.46 1.38 16 27 H 0.24 1.88 7.80 -4.41 -0.03 1.85 16 28 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 29 H 0.10 1.16 7.25 -2.39 -0.02 1.14 16 30 H 0.04 0.74 7.88 -2.39 -0.02 0.72 16 31 H 0.06 1.32 8.13 -2.39 -0.02 1.30 16 32 H 0.10 0.95 7.75 -2.38 -0.02 0.94 16 33 H 0.06 0.66 6.87 -2.39 -0.02 0.65 16 34 H 0.08 0.71 7.18 -2.39 -0.02 0.69 16 35 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.08 1.03 8.14 -2.39 -0.02 1.02 16 37 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.05 1.46 6.66 -2.38 -0.02 1.44 16 39 H 0.07 1.51 7.25 -2.39 -0.02 1.49 16 40 H 0.41 7.56 8.31 -92.71 -0.77 6.79 16 41 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 42 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 43 H 0.28 15.71 8.31 -92.71 -0.77 14.94 16 44 H 0.05 1.21 7.11 -2.38 -0.02 1.20 16 45 H 0.06 1.82 6.79 -2.39 -0.02 1.81 16 Total: -1.00 -74.27 372.86 0.47 -73.80 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: 0.18 Total: 17.15 kcal Atomic # 6 Polarization: -22.14 SS G_CDS: 6.10 Total: -16.04 kcal Atomic # 7 Polarization: -82.89 SS G_CDS: -6.62 Total: -89.51 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: -0.04 Total: -22.98 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 1.90 Total: 47.41 kcal Atomic # 16 Polarization: -8.78 SS G_CDS: -1.05 Total: -9.83 kcal Total: -74.27 0.47 -73.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111599900.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.598 kcal (2) G-P(sol) polarization free energy of solvation -74.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds