Wall clock time and date at job start Tue Mar 31 2020 14:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47206 * 1 3 3 C 1.17403 * 179.97438 * 2 1 4 4 C 1.47194 * 179.97438 * 162.18558 * 3 2 1 5 5 N 1.46901 * 109.47015 * 322.86907 * 4 3 2 6 6 C 1.48528 * 110.99818 * 69.87681 * 5 4 3 7 7 C 1.54323 * 104.67302 * 200.80325 * 6 5 4 8 8 H 1.09002 * 111.82389 * 262.42953 * 7 6 5 9 9 C 1.54163 * 108.86562 * 137.48783 * 7 6 5 10 10 C 1.54847 * 104.32467 * 223.67335 * 9 7 6 11 11 C 1.54851 * 102.73072 * 38.18832 * 10 9 7 12 12 C 1.54166 * 104.32403 * 321.81234 * 11 10 9 13 13 N 1.46501 * 111.79400 * 261.29803 * 12 11 10 14 14 C 1.34776 * 119.99776 * 299.22290 * 13 12 11 15 15 O 1.21283 * 120.00218 * 0.02562 * 14 13 12 16 16 C 1.50697 * 119.99594 * 180.02562 * 14 13 12 17 17 S 1.81001 * 109.47013 * 180.02562 * 16 14 13 18 18 C 1.76201 * 100.00061 * 180.02562 * 17 16 14 19 19 H 1.08007 * 119.99898 * 359.97438 * 18 17 16 20 20 C 1.38797 * 119.99873 * 180.02562 * 18 17 16 21 21 N 1.31626 * 120.00540 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 119.99755 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47318 * 89.99550 * 22 20 18 24 24 H 1.48502 * 109.46877 * 209.99574 * 22 20 18 25 25 H 1.48491 * 109.47054 * 329.99407 * 22 20 18 26 26 C 1.48531 * 111.00439 * 314.46739 * 5 4 3 27 27 H 1.08992 * 109.47387 * 294.94171 * 1 2 3 28 28 H 1.09004 * 109.47019 * 54.94831 * 1 2 3 29 29 H 1.09001 * 109.46457 * 174.94463 * 1 2 3 30 30 H 1.09002 * 109.47132 * 82.87190 * 4 3 2 31 31 H 1.09001 * 109.47213 * 202.87220 * 4 3 2 32 32 H 1.08997 * 110.39789 * 319.60036 * 6 5 4 33 33 H 1.09000 * 110.40279 * 81.89058 * 6 5 4 34 34 H 1.08999 * 110.46592 * 342.38778 * 9 7 6 35 35 H 1.09001 * 110.46010 * 104.96553 * 9 7 6 36 36 H 1.08990 * 110.76075 * 279.87890 * 10 9 7 37 37 H 1.08999 * 110.91513 * 156.57093 * 10 9 7 38 38 H 1.08997 * 110.46035 * 203.10305 * 11 10 9 39 39 H 1.09003 * 110.46225 * 80.52649 * 11 10 9 40 40 H 0.96994 * 119.99609 * 119.22532 * 13 12 11 41 41 H 1.08999 * 109.47682 * 300.00430 * 16 14 13 42 42 H 1.08998 * 109.47242 * 60.00477 * 16 14 13 43 43 H 0.97002 * 120.00380 * 180.02562 * 21 20 18 44 44 H 1.08998 * 110.39914 * 277.99534 * 26 5 4 45 45 H 1.09003 * 110.38853 * 40.39493 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4721 0.0000 0.0000 3 6 2.6461 0.0005 0.0000 4 6 4.1180 0.0018 -0.0002 5 7 4.6087 -1.1020 0.8358 6 6 4.3374 -2.4150 0.1967 7 6 4.3939 -3.4328 1.3553 8 1 5.3647 -3.9247 1.4156 9 6 3.2333 -4.4348 1.1956 10 6 2.6569 -4.5844 2.6250 11 6 2.7515 -3.1433 3.1837 12 6 4.0855 -2.6058 2.6283 13 7 5.1635 -2.7007 3.6158 14 6 5.0637 -2.0423 4.7876 15 8 4.0813 -1.3718 5.0248 16 6 6.1728 -2.1394 5.8032 17 16 5.7456 -1.1530 7.2593 18 6 7.1732 -1.4385 8.2519 19 1 7.9683 -2.0708 7.8851 20 6 7.2753 -0.8518 9.5057 21 7 6.3061 -0.0817 9.9530 22 14 8.7891 -1.1540 10.5577 23 1 9.8113 -0.1179 10.2634 24 1 8.4155 -1.0871 11.9934 25 1 9.3438 -2.4973 10.2526 26 6 3.8706 -1.1636 2.1232 27 1 -0.3634 0.4333 0.9317 28 1 -0.3633 0.5902 -0.8413 29 1 -0.3632 -1.0237 -0.0906 30 1 4.4813 -0.1254 -1.0200 31 1 4.4806 0.9490 0.3992 32 1 3.3490 -2.4168 -0.2627 33 1 5.1016 -2.6407 -0.5471 34 1 2.4766 -4.0370 0.5193 35 1 3.6045 -5.3931 0.8322 36 1 3.2644 -5.2689 3.2168 37 1 1.6200 -4.9192 2.5934 38 1 2.7706 -3.1577 4.2734 39 1 1.9182 -2.5397 2.8242 40 1 5.9489 -3.2372 3.4262 41 1 6.3068 -3.1806 6.0966 42 1 7.0983 -1.7628 5.3676 43 1 6.3777 0.3286 10.8290 44 1 4.2841 -0.4470 2.8329 45 1 2.8098 -0.9714 1.9624 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111601217.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:43 Heat of formation + Delta-G solvation = 14.866683 kcal Electronic energy + Delta-G solvation = -25106.325389 eV Core-core repulsion = 21636.921245 eV Total energy + Delta-G solvation = -3469.404144 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.89459 -38.45148 -36.43260 -33.84878 -33.46483 -32.40236 -30.75253 -30.39341 -28.74722 -27.69490 -25.80885 -25.48417 -25.05833 -22.07230 -20.89538 -20.01309 -19.24222 -17.82651 -17.25952 -16.56571 -16.03180 -15.90591 -15.37937 -14.90886 -14.78195 -14.55847 -14.34306 -14.15001 -14.06012 -13.71417 -13.54837 -13.40972 -13.13578 -12.69430 -12.53980 -12.35989 -12.13279 -11.73778 -11.63250 -11.33937 -11.21801 -11.04469 -11.01416 -10.98106 -10.86001 -10.75833 -10.72172 -10.06157 -9.86481 -9.78313 -9.23248 -9.04327 -8.81702 -8.74047 -8.19883 -6.46254 -6.19184 -3.89034 2.43259 2.51605 3.07091 3.15897 3.24154 3.29806 3.34331 3.75490 3.84259 4.05907 4.10903 4.23190 4.34083 4.60801 4.95308 4.99321 5.07842 5.15563 5.16019 5.18843 5.24151 5.26235 5.31732 5.33123 5.38394 5.46891 5.50588 5.55593 5.58670 5.63987 5.67355 5.69908 5.79285 5.87867 5.94559 5.95136 6.11644 6.17143 6.18951 6.22876 6.58130 6.74322 6.86286 7.42828 7.62168 7.81951 8.37838 8.70131 9.26261 10.88201 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.018753 B = 0.002860 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.745716 B = 9788.528972 C =10220.347215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 C -0.181 4.181 3 C -0.217 4.217 4 C 0.153 3.847 5 N -0.499 5.499 6 C 0.034 3.966 7 C -0.096 4.096 8 H 0.093 0.907 9 C -0.117 4.117 10 C -0.124 4.124 11 C -0.125 4.125 12 C 0.180 3.820 13 N -0.718 5.718 14 C 0.534 3.466 15 O -0.515 6.515 16 C -0.153 4.153 17 S -0.059 6.059 18 C -0.535 4.535 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.918 3.082 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C 0.029 3.971 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.051 0.949 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.398 0.602 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.268 0.732 44 H 0.094 0.906 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.390 -7.102 -23.405 25.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.183 4.183 3 C -0.218 4.218 4 C 0.025 3.975 5 N -0.221 5.221 6 C -0.094 4.094 7 C -0.115 4.115 8 H 0.111 0.889 9 C -0.155 4.155 10 C -0.161 4.161 11 C -0.164 4.164 12 C 0.093 3.907 13 N -0.372 5.372 14 C 0.320 3.680 15 O -0.389 6.389 16 C -0.304 4.304 17 S 0.167 5.833 18 C -0.683 4.683 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.744 3.256 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.197 1.197 26 C -0.099 4.099 27 H 0.100 0.900 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.113 0.887 31 H 0.119 0.881 32 H 0.070 0.930 33 H 0.101 0.899 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.101 0.899 39 H 0.089 0.911 40 H 0.233 0.767 41 H 0.106 0.894 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.112 0.888 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.490 -5.758 -22.776 24.980 hybrid contribution 1.647 -1.201 0.174 2.046 sum -6.843 -6.959 -22.602 24.619 Atomic orbital electron populations 1.18884 0.84782 1.02976 1.03190 1.22567 0.94029 1.00392 1.01295 1.23400 0.94834 1.02157 1.01456 1.19556 0.82044 0.96865 0.99005 1.65804 1.50879 1.01884 1.03488 1.23329 1.00522 0.89083 0.96475 1.22727 0.99833 0.95579 0.93359 0.88855 1.22467 0.96692 0.98669 0.97640 1.22530 1.00903 0.97203 0.95513 1.22732 0.95694 0.95483 1.02464 1.21284 0.87871 0.94129 0.87464 1.45914 1.21957 1.52445 1.16837 1.20250 0.87898 0.78337 0.81466 1.90690 1.31785 1.39059 1.77367 1.23538 0.99719 1.06001 1.01155 1.85361 1.28235 1.61353 1.08321 1.22875 1.05637 1.35648 1.04124 0.90980 1.24985 0.97174 0.94570 0.96863 1.70016 1.31640 1.29672 1.19013 0.86179 0.81649 0.78728 0.79014 1.20279 1.20782 1.19715 1.23668 0.97659 0.97622 0.90964 0.89998 0.90207 0.90261 0.88671 0.88113 0.93044 0.89930 0.91370 0.91284 0.91277 0.91441 0.89877 0.91108 0.76730 0.89398 0.89279 0.92228 0.88793 0.91864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.32 10.32 34.37 0.35 0.04 16 2 C -0.18 -2.00 13.82 -37.12 -0.51 -2.51 16 3 C -0.22 -2.50 10.26 -37.13 -0.38 -2.89 16 4 C 0.15 1.58 6.09 -6.61 -0.04 1.54 16 5 N -0.50 -5.79 5.65 -233.60 -1.32 -7.11 16 6 C 0.03 0.32 5.86 -2.23 -0.01 0.31 16 7 C -0.10 -0.91 3.70 -88.32 -0.33 -1.24 16 8 H 0.09 0.81 7.72 -51.93 -0.40 0.40 16 9 C -0.12 -0.98 6.36 -25.15 -0.16 -1.14 16 10 C -0.12 -1.22 6.90 -24.78 -0.17 -1.39 16 11 C -0.12 -1.62 5.62 -25.15 -0.14 -1.76 16 12 C 0.18 2.28 0.91 -129.52 -0.12 2.16 16 13 N -0.72 -10.00 5.27 -45.48 -0.24 -10.24 16 14 C 0.53 9.95 6.91 -10.99 -0.08 9.87 16 15 O -0.51 -11.36 13.38 5.56 0.07 -11.29 16 16 C -0.15 -3.13 6.16 36.00 0.22 -2.90 16 17 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 18 C -0.53 -15.34 9.50 30.94 0.29 -15.05 16 19 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.33 13.22 55.49 0.73 -25.60 16 22 Si 0.92 21.57 29.55 -169.99 -5.02 16.55 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 26 C 0.03 0.41 5.11 -2.23 -0.01 0.39 16 27 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.10 0.78 8.08 -51.93 -0.42 0.36 16 31 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.05 0.50 6.18 -51.93 -0.32 0.18 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.56 7.18 -51.93 -0.37 0.19 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 1.32 6.66 -51.93 -0.35 0.98 16 39 H 0.07 0.92 7.18 -51.93 -0.37 0.55 16 40 H 0.40 4.51 8.31 -40.82 -0.34 4.17 16 41 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 42 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 43 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 44 H 0.09 1.63 6.83 -51.93 -0.35 1.27 16 45 H 0.06 0.92 4.97 -51.93 -0.26 0.66 16 LS Contribution 372.64 15.07 5.62 5.62 Total: -1.00 -34.20 372.64 -10.51 -44.71 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -6.96 Total: 3.74 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: -1.18 Total: -12.54 kcal Atomic # 7 Polarization: -42.13 SS G_CDS: -0.83 Total: -42.96 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.07 Total: -11.29 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.20 -10.51 -44.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111601217.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.574 kcal (2) G-P(sol) polarization free energy of solvation -34.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds