Wall clock time and date at job start Tue Mar 31 2020 14:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47206 * 1 3 3 C 1.17403 * 179.97438 * 2 1 4 4 C 1.47194 * 179.97438 * 162.18558 * 3 2 1 5 5 N 1.46901 * 109.47015 * 322.86907 * 4 3 2 6 6 C 1.48528 * 110.99818 * 69.87681 * 5 4 3 7 7 C 1.54323 * 104.67302 * 200.80325 * 6 5 4 8 8 H 1.09002 * 111.82389 * 262.42953 * 7 6 5 9 9 C 1.54163 * 108.86562 * 137.48783 * 7 6 5 10 10 C 1.54847 * 104.32467 * 223.67335 * 9 7 6 11 11 C 1.54851 * 102.73072 * 38.18832 * 10 9 7 12 12 C 1.54166 * 104.32403 * 321.81234 * 11 10 9 13 13 N 1.46501 * 111.79400 * 261.29803 * 12 11 10 14 14 C 1.34776 * 119.99776 * 299.22290 * 13 12 11 15 15 O 1.21283 * 120.00218 * 0.02562 * 14 13 12 16 16 C 1.50697 * 119.99594 * 180.02562 * 14 13 12 17 17 S 1.81001 * 109.47013 * 180.02562 * 16 14 13 18 18 C 1.76201 * 100.00061 * 180.02562 * 17 16 14 19 19 H 1.08007 * 119.99898 * 359.97438 * 18 17 16 20 20 C 1.38797 * 119.99873 * 180.02562 * 18 17 16 21 21 N 1.31626 * 120.00540 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 119.99755 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47318 * 89.99550 * 22 20 18 24 24 H 1.48502 * 109.46877 * 209.99574 * 22 20 18 25 25 H 1.48491 * 109.47054 * 329.99407 * 22 20 18 26 26 C 1.48531 * 111.00439 * 314.46739 * 5 4 3 27 27 H 1.08992 * 109.47387 * 294.94171 * 1 2 3 28 28 H 1.09004 * 109.47019 * 54.94831 * 1 2 3 29 29 H 1.09001 * 109.46457 * 174.94463 * 1 2 3 30 30 H 1.09002 * 109.47132 * 82.87190 * 4 3 2 31 31 H 1.09001 * 109.47213 * 202.87220 * 4 3 2 32 32 H 1.08997 * 110.39789 * 319.60036 * 6 5 4 33 33 H 1.09000 * 110.40279 * 81.89058 * 6 5 4 34 34 H 1.08999 * 110.46592 * 342.38778 * 9 7 6 35 35 H 1.09001 * 110.46010 * 104.96553 * 9 7 6 36 36 H 1.08990 * 110.76075 * 279.87890 * 10 9 7 37 37 H 1.08999 * 110.91513 * 156.57093 * 10 9 7 38 38 H 1.08997 * 110.46035 * 203.10305 * 11 10 9 39 39 H 1.09003 * 110.46225 * 80.52649 * 11 10 9 40 40 H 0.96994 * 119.99609 * 119.22532 * 13 12 11 41 41 H 1.08999 * 109.47682 * 300.00430 * 16 14 13 42 42 H 1.08998 * 109.47242 * 60.00477 * 16 14 13 43 43 H 0.97002 * 120.00380 * 180.02562 * 21 20 18 44 44 H 1.08998 * 110.39914 * 277.99534 * 26 5 4 45 45 H 1.09003 * 110.38853 * 40.39493 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4721 0.0000 0.0000 3 6 2.6461 0.0005 0.0000 4 6 4.1180 0.0018 -0.0002 5 7 4.6087 -1.1020 0.8358 6 6 4.3374 -2.4150 0.1967 7 6 4.3939 -3.4328 1.3553 8 1 5.3647 -3.9247 1.4156 9 6 3.2333 -4.4348 1.1956 10 6 2.6569 -4.5844 2.6250 11 6 2.7515 -3.1433 3.1837 12 6 4.0855 -2.6058 2.6283 13 7 5.1635 -2.7007 3.6158 14 6 5.0637 -2.0423 4.7876 15 8 4.0813 -1.3718 5.0248 16 6 6.1728 -2.1394 5.8032 17 16 5.7456 -1.1530 7.2593 18 6 7.1732 -1.4385 8.2519 19 1 7.9683 -2.0708 7.8851 20 6 7.2753 -0.8518 9.5057 21 7 6.3061 -0.0817 9.9530 22 14 8.7891 -1.1540 10.5577 23 1 9.8113 -0.1179 10.2634 24 1 8.4155 -1.0871 11.9934 25 1 9.3438 -2.4973 10.2526 26 6 3.8706 -1.1636 2.1232 27 1 -0.3634 0.4333 0.9317 28 1 -0.3633 0.5902 -0.8413 29 1 -0.3632 -1.0237 -0.0906 30 1 4.4813 -0.1254 -1.0200 31 1 4.4806 0.9490 0.3992 32 1 3.3490 -2.4168 -0.2627 33 1 5.1016 -2.6407 -0.5471 34 1 2.4766 -4.0370 0.5193 35 1 3.6045 -5.3931 0.8322 36 1 3.2644 -5.2689 3.2168 37 1 1.6200 -4.9192 2.5934 38 1 2.7706 -3.1577 4.2734 39 1 1.9182 -2.5397 2.8242 40 1 5.9489 -3.2372 3.4262 41 1 6.3068 -3.1806 6.0966 42 1 7.0983 -1.7628 5.3676 43 1 6.3777 0.3286 10.8290 44 1 4.2841 -0.4470 2.8329 45 1 2.8098 -0.9714 1.9624 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111601217.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:42 Heat of formation + Delta-G solvation = -8.961077 kcal Electronic energy + Delta-G solvation = -25107.358638 eV Core-core repulsion = 21636.921245 eV Total energy + Delta-G solvation = -3470.437393 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.94027 -39.80511 -37.34289 -34.75412 -34.63239 -34.57509 -31.66546 -31.51605 -29.96687 -28.62906 -27.65103 -26.69748 -25.95528 -23.15988 -21.78899 -21.12686 -20.42899 -19.74182 -18.29624 -17.59506 -17.46653 -16.88077 -16.86307 -16.30177 -16.28151 -15.94887 -15.38940 -15.25987 -14.92103 -14.79252 -14.55392 -14.36641 -14.26461 -14.10200 -13.77878 -13.39189 -13.25331 -13.16376 -12.90409 -12.78362 -12.65894 -12.53815 -12.36673 -12.05675 -11.85425 -11.72779 -11.66995 -11.57466 -11.14330 -10.86680 -10.77763 -10.66427 -10.26937 -10.03737 -9.71037 -8.65816 -8.34629 -6.12272 1.27020 1.42136 1.46827 1.57435 1.59323 1.65322 1.68329 2.25387 2.30041 2.97049 2.99368 3.20747 3.30601 3.33707 3.46004 3.80068 3.95495 4.10013 4.18757 4.27668 4.29640 4.33784 4.39428 4.46675 4.51049 4.56386 4.63696 4.69737 4.70638 4.72860 4.74705 4.79789 4.85910 4.93686 4.98667 5.00694 5.09063 5.16829 5.21154 5.40251 5.41628 5.59140 5.72697 5.87236 6.19754 6.56699 6.60845 7.06594 7.30229 8.74561 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.018753 B = 0.002860 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.745716 B = 9788.528972 C =10220.347215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 C -0.191 4.191 3 C -0.244 4.244 4 C 0.151 3.849 5 N -0.505 5.505 6 C 0.036 3.964 7 C -0.087 4.087 8 H 0.113 0.887 9 C -0.107 4.107 10 C -0.118 4.118 11 C -0.126 4.126 12 C 0.174 3.826 13 N -0.695 5.695 14 C 0.536 3.464 15 O -0.556 6.556 16 C -0.129 4.129 17 S -0.148 6.148 18 C -0.546 4.546 19 H 0.082 0.918 20 C 0.013 3.987 21 N -0.912 5.912 22 Si 0.999 3.001 23 H -0.268 1.268 24 H -0.277 1.277 25 H -0.258 1.258 26 C 0.036 3.964 27 H 0.082 0.918 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.121 0.879 31 H 0.093 0.907 32 H 0.052 0.948 33 H 0.107 0.893 34 H 0.072 0.928 35 H 0.095 0.905 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.046 0.954 39 H 0.062 0.938 40 H 0.415 0.585 41 H 0.108 0.892 42 H 0.105 0.895 43 H 0.271 0.729 44 H 0.051 0.949 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.006 -9.475 -25.635 27.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.192 4.192 3 C -0.246 4.246 4 C 0.024 3.976 5 N -0.226 5.226 6 C -0.091 4.091 7 C -0.106 4.106 8 H 0.131 0.869 9 C -0.145 4.145 10 C -0.155 4.155 11 C -0.165 4.165 12 C 0.086 3.914 13 N -0.348 5.348 14 C 0.322 3.678 15 O -0.434 6.434 16 C -0.280 4.280 17 S 0.079 5.921 18 C -0.694 4.694 19 H 0.100 0.900 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.820 3.180 23 H -0.193 1.193 24 H -0.202 1.202 25 H -0.182 1.182 26 C -0.093 4.093 27 H 0.101 0.899 28 H 0.117 0.883 29 H 0.112 0.888 30 H 0.139 0.861 31 H 0.111 0.889 32 H 0.070 0.930 33 H 0.125 0.875 34 H 0.091 0.909 35 H 0.114 0.886 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.065 0.935 39 H 0.081 0.919 40 H 0.252 0.748 41 H 0.126 0.874 42 H 0.124 0.876 43 H 0.080 0.920 44 H 0.070 0.930 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.091 -8.165 -25.058 27.292 hybrid contribution 1.136 -0.440 0.760 1.436 sum -5.955 -8.605 -24.298 26.456 Atomic orbital electron populations 1.19092 0.82734 1.04322 1.04017 1.23444 0.95288 0.99705 1.00795 1.23769 0.95559 1.03072 1.02207 1.19641 0.81729 0.96255 0.99981 1.65768 1.50498 1.03444 1.02896 1.23424 1.01455 0.87565 0.96651 1.22790 1.01422 0.95472 0.90963 0.86868 1.22446 0.96108 0.99507 0.96418 1.22510 1.01939 0.94633 0.96451 1.22682 0.95722 0.97965 1.00181 1.21493 0.87317 0.94209 0.88336 1.45667 1.22856 1.50921 1.15358 1.19988 0.86834 0.78526 0.82455 1.90684 1.33190 1.41134 1.78367 1.23371 1.00834 1.05472 0.98353 1.85545 1.29821 1.64031 1.12702 1.23207 1.05690 1.35874 1.04630 0.90022 1.26130 1.00749 0.93976 0.98332 1.70183 1.34125 1.30881 1.19621 0.84954 0.77004 0.79295 0.76731 1.19332 1.20250 1.18166 1.23419 0.96895 0.97303 0.91652 0.89916 0.88296 0.88754 0.86137 0.88855 0.92962 0.87517 0.90894 0.88621 0.91096 0.90359 0.93542 0.91900 0.74753 0.87418 0.87648 0.92015 0.93038 0.93000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.64 10.32 70.18 0.72 0.09 16 2 C -0.19 -4.14 13.82 31.13 0.43 -3.71 16 3 C -0.24 -5.62 10.26 31.12 0.32 -5.30 16 4 C 0.15 3.05 6.09 84.50 0.51 3.56 16 5 N -0.50 -11.23 5.65 -892.99 -5.04 -16.28 16 6 C 0.04 0.59 5.86 86.44 0.51 1.10 16 7 C -0.09 -1.40 3.70 -9.30 -0.03 -1.44 16 8 H 0.11 1.44 7.72 -2.39 -0.02 1.42 16 9 C -0.11 -1.40 6.36 31.62 0.20 -1.20 16 10 C -0.12 -2.08 6.90 31.86 0.22 -1.86 16 11 C -0.13 -3.30 5.62 31.62 0.18 -3.13 16 12 C 0.17 4.29 0.91 5.09 0.00 4.30 16 13 N -0.69 -18.86 5.27 -416.21 -2.19 -21.05 16 14 C 0.54 20.40 6.91 87.66 0.61 21.00 16 15 O -0.56 -25.99 13.38 -3.04 -0.04 -26.03 16 16 C -0.13 -5.27 6.16 71.24 0.44 -4.83 16 17 S -0.15 -8.37 20.57 -56.49 -1.16 -9.53 16 18 C -0.55 -31.67 9.50 67.95 0.65 -31.02 16 19 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 20 C 0.01 0.74 5.49 84.86 0.47 1.20 16 21 N -0.91 -56.71 13.22 21.65 0.29 -56.42 16 22 Si 1.00 44.15 29.55 68.60 2.03 46.17 16 23 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 24 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 25 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 26 C 0.04 1.04 5.11 86.43 0.44 1.48 16 27 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.12 1.76 8.08 -2.39 -0.02 1.74 16 31 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.05 0.87 6.18 -2.39 -0.01 0.85 16 33 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.07 0.93 7.18 -2.39 -0.02 0.92 16 35 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.05 1.55 6.66 -2.39 -0.02 1.54 16 39 H 0.06 1.70 7.18 -2.39 -0.02 1.68 16 40 H 0.41 8.44 8.31 -92.71 -0.77 7.67 16 41 H 0.11 3.96 8.14 -2.40 -0.02 3.94 16 42 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 43 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 44 H 0.05 1.91 6.83 -2.39 -0.02 1.89 16 45 H 0.05 1.59 4.97 -2.39 -0.01 1.57 16 Total: -1.00 -78.61 372.64 -0.23 -78.85 By element: Atomic # 1 Polarization: 23.83 SS G_CDS: 0.23 Total: 24.06 kcal Atomic # 6 Polarization: -25.43 SS G_CDS: 5.66 Total: -19.77 kcal Atomic # 7 Polarization: -86.80 SS G_CDS: -6.95 Total: -93.75 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -0.04 Total: -26.03 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Atomic # 16 Polarization: -8.37 SS G_CDS: -1.16 Total: -9.53 kcal Total: -78.61 -0.23 -78.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111601217.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.885 kcal (2) G-P(sol) polarization free energy of solvation -78.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds