Wall clock time and date at job start Tue Mar 31 2020 14:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47392 * 54.54995 * 3 2 1 5 5 N 1.46894 * 109.47497 * 179.97438 * 4 3 2 6 6 C 1.46898 * 111.00259 * 179.97438 * 5 4 3 7 7 C 1.53952 * 113.58187 * 155.00002 * 6 5 4 8 8 C 1.52909 * 86.78355 * 139.33751 * 7 6 5 9 9 C 1.52914 * 88.04315 * 335.10152 * 8 7 6 10 10 C 1.52906 * 121.13590 * 100.82048 * 8 7 6 11 11 C 1.53947 * 86.78053 * 100.82014 * 10 8 7 12 12 N 1.46500 * 113.58000 * 139.33884 * 11 10 8 13 13 C 1.34779 * 120.00169 * 154.99479 * 12 11 10 14 14 O 1.21282 * 119.99922 * 0.02562 * 13 12 11 15 15 C 1.50699 * 120.00037 * 180.02562 * 13 12 11 16 16 S 1.81000 * 109.46881 * 180.02562 * 15 13 12 17 17 C 1.76206 * 99.99929 * 180.02562 * 16 15 13 18 18 H 1.07998 * 119.99720 * 359.97438 * 17 16 15 19 19 C 1.38796 * 119.99847 * 180.02562 * 17 16 15 20 20 N 1.31625 * 120.00398 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99778 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47367 * 59.99618 * 21 19 17 23 23 H 1.48498 * 109.47311 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46831 * 299.99623 * 21 19 17 25 25 C 1.52901 * 121.13483 * 209.38235 * 8 7 6 26 26 H 4.44651 * 5.63229 * 179.97438 * 4 1 2 27 27 H 1.08995 * 109.47755 * 294.54466 * 3 2 1 28 28 H 1.09008 * 109.47072 * 174.54340 * 3 2 1 29 29 H 1.08995 * 109.47103 * 59.99071 * 4 3 2 30 30 H 1.09008 * 109.46477 * 299.99709 * 4 3 2 31 31 H 1.00901 * 111.00288 * 303.95537 * 5 4 3 32 32 H 1.09000 * 112.87573 * 23.86038 * 6 5 4 33 33 H 1.09000 * 113.66174 * 24.86408 * 7 6 5 34 34 H 1.08997 * 113.66115 * 253.81358 * 7 6 5 35 35 H 1.08994 * 113.66145 * 139.37314 * 9 8 7 36 36 H 1.09000 * 113.66281 * 270.43068 * 9 8 7 37 37 H 1.08999 * 113.66138 * 346.34394 * 10 8 7 38 38 H 1.09000 * 113.66105 * 215.29114 * 10 8 7 39 39 H 1.09001 * 113.57904 * 270.05247 * 11 10 8 40 40 H 0.96996 * 119.99986 * 335.00076 * 12 11 10 41 41 H 1.09000 * 109.47247 * 60.00371 * 15 13 12 42 42 H 1.09001 * 109.47358 * 299.99798 * 15 13 12 43 43 H 0.96996 * 120.00393 * 180.02562 * 20 19 17 44 44 H 1.09004 * 113.66496 * 144.71378 * 25 8 7 45 45 H 1.09002 * 113.66688 * 13.65390 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1564 -0.8357 -1.1751 5 7 4.6254 -0.8346 -1.1755 6 6 5.1522 -1.6302 -2.2923 7 6 6.5663 -1.2113 -2.7338 8 6 6.8695 -2.7030 -2.8789 9 6 5.7653 -2.9734 -1.8562 10 6 6.8616 -3.3817 -4.2491 11 6 8.3973 -3.2806 -4.2116 12 7 9.0758 -4.4743 -4.7223 13 6 10.3238 -4.3781 -5.2221 14 8 10.8853 -3.3034 -5.2486 15 6 11.0216 -5.6059 -5.7480 16 16 12.6696 -5.1542 -6.3447 17 6 13.2416 -6.7304 -6.8864 18 1 12.6058 -7.5980 -6.7895 19 6 14.5096 -6.8570 -7.4364 20 7 15.2846 -5.7997 -7.5540 21 14 15.1156 -8.5279 -8.0113 22 1 14.2119 -9.0449 -9.0702 23 1 16.4911 -8.3954 -8.5550 24 1 15.1260 -9.4719 -6.8649 25 6 8.2847 -3.2455 -2.6766 26 1 -1.0498 -0.0003 0.0000 27 1 3.0096 -0.4260 0.9347 28 1 3.0089 1.0239 -0.0977 29 1 2.7928 -0.4090 -2.1098 30 1 2.7935 -1.8590 -1.0773 31 1 4.9863 0.1073 -1.2003 32 1 4.4465 -1.7207 -3.1181 33 1 7.1428 -0.7221 -1.9486 34 1 6.5865 -0.6669 -3.6778 35 1 5.1458 -3.8366 -2.0993 36 1 6.1167 -2.9794 -0.8244 37 1 6.4024 -2.7794 -5.0330 38 1 6.4900 -4.4062 -4.2276 39 1 8.7841 -2.3573 -4.6428 40 1 8.6269 -5.3339 -4.7009 41 1 10.4418 -6.0304 -6.5676 42 1 11.1140 -6.3416 -4.9491 43 1 16.1706 -5.8881 -7.9387 44 1 8.3131 -4.2317 -2.2133 45 1 8.9625 -2.5344 -2.2044 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120665763.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:52 Heat of formation + Delta-G solvation = 50.927533 kcal Electronic energy + Delta-G solvation = -23018.491097 eV Core-core repulsion = 19550.650669 eV Total energy + Delta-G solvation = -3467.840428 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.96029 -38.91958 -37.17589 -35.35579 -33.46785 -32.41997 -32.07525 -29.40364 -28.68222 -26.15635 -26.03131 -25.48513 -23.66500 -22.71686 -20.89458 -20.31728 -18.51063 -18.23555 -17.74188 -16.63080 -16.37953 -16.02779 -15.98212 -15.43073 -15.05177 -14.79564 -14.76928 -14.52739 -14.04607 -13.55831 -13.30595 -13.08269 -12.96121 -12.93700 -12.58444 -12.48173 -12.31033 -12.17613 -11.99329 -11.46202 -11.15403 -11.03777 -11.03002 -10.92937 -10.74923 -10.58964 -10.56205 -10.40135 -10.14368 -9.79992 -9.33213 -9.05158 -8.90468 -8.79327 -8.22539 -6.48636 -6.20424 -3.90986 2.33229 2.39690 3.07024 3.10125 3.24221 3.28482 3.32932 3.57078 3.74858 4.08593 4.17356 4.20503 4.21734 4.35301 4.42297 4.60403 4.61324 4.74795 4.80009 4.97521 5.00732 5.13314 5.14668 5.32100 5.41325 5.44821 5.47285 5.50901 5.52627 5.57379 5.58387 5.64389 5.71569 5.75716 5.82787 5.90991 5.99895 6.10110 6.15905 6.23670 6.64400 6.72782 6.88998 7.16994 7.60261 7.76356 8.36084 8.65144 9.24728 10.86982 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.061333 B = 0.001561 C = 0.001541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.412004 B =17934.813256 C =18161.769365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.187 4.187 3 C -0.012 4.012 4 C 0.064 3.936 5 N -0.679 5.679 6 C 0.060 3.940 7 C -0.117 4.117 8 C -0.104 4.104 9 C -0.107 4.107 10 C -0.122 4.122 11 C 0.129 3.871 12 N -0.729 5.729 13 C 0.532 3.468 14 O -0.519 6.519 15 C -0.154 4.154 16 S -0.060 6.060 17 C -0.537 4.537 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.918 3.082 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C -0.135 4.135 26 H 0.217 0.783 27 H 0.096 0.904 28 H 0.085 0.915 29 H 0.033 0.967 30 H 0.076 0.924 31 H 0.343 0.657 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.092 0.908 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.113 0.887 40 H 0.398 0.602 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.269 0.731 44 H 0.086 0.914 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.303 8.664 13.521 31.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.187 4.187 3 C -0.049 4.049 4 C -0.066 4.066 5 N -0.310 5.310 6 C -0.049 4.049 7 C -0.155 4.155 8 C -0.105 4.105 9 C -0.145 4.145 10 C -0.160 4.160 11 C 0.023 3.977 12 N -0.382 5.382 13 C 0.319 3.681 14 O -0.393 6.393 15 C -0.305 4.305 16 S 0.166 5.834 17 C -0.685 4.685 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.503 5.503 21 Si 0.744 3.256 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.199 1.199 25 C -0.174 4.174 26 H 0.234 0.766 27 H 0.114 0.886 28 H 0.103 0.897 29 H 0.051 0.949 30 H 0.095 0.905 31 H 0.161 0.839 32 H 0.091 0.909 33 H 0.112 0.888 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.110 0.890 37 H 0.092 0.908 38 H 0.107 0.893 39 H 0.131 0.869 40 H 0.232 0.768 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.079 0.921 44 H 0.104 0.896 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -26.108 10.028 13.847 31.208 hybrid contribution -0.939 -2.176 -1.062 2.597 sum -27.047 7.852 12.785 30.930 Atomic orbital electron populations 1.24946 0.96024 1.00932 1.00720 1.23050 0.94504 1.00531 1.00625 1.18674 0.84467 1.01281 1.00498 1.21915 0.88017 1.00490 0.96138 1.60589 1.06683 1.18328 1.45381 1.23042 0.94668 0.95576 0.91634 1.22970 0.95566 0.95153 1.01828 1.22044 0.95941 0.96166 0.96325 1.22870 0.96024 0.96246 0.99379 1.23095 0.95984 1.01126 0.95817 1.22397 0.91063 0.90454 0.93760 1.46004 1.16494 1.10879 1.64788 1.20341 0.80821 0.90613 0.76363 1.90691 1.64729 1.29355 1.54496 1.23544 1.04831 0.98426 1.03708 1.85388 1.05190 1.14131 1.78664 1.22835 1.03637 0.94476 1.47529 0.90998 1.24980 0.95579 0.97792 0.95146 1.70004 1.09284 1.28900 1.42132 0.86234 0.77882 0.82431 0.79011 1.19946 1.20801 1.19942 1.23283 0.95265 1.01766 0.97080 0.76627 0.88572 0.89656 0.94853 0.90543 0.83861 0.90926 0.88816 0.91126 0.91769 0.88998 0.90824 0.89324 0.86918 0.76823 0.89269 0.89253 0.92133 0.89553 0.90850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.34 19.25 29.55 0.57 -0.77 16 2 C -0.19 -1.34 13.34 -37.13 -0.50 -1.83 16 3 C -0.01 -0.07 5.96 -29.52 -0.18 -0.24 16 4 C 0.06 0.37 5.48 -3.83 -0.02 0.35 16 5 N -0.68 -4.12 6.56 -105.69 -0.69 -4.81 16 6 C 0.06 0.40 4.14 -66.73 -0.28 0.12 16 7 C -0.12 -0.84 7.41 -26.28 -0.19 -1.03 16 8 C -0.10 -0.82 1.11 -154.72 -0.17 -0.99 16 9 C -0.11 -0.78 7.64 -26.28 -0.20 -0.98 16 10 C -0.12 -1.02 7.59 -26.29 -0.20 -1.22 16 11 C 0.13 1.49 4.24 -66.95 -0.28 1.21 16 12 N -0.73 -9.67 5.35 -52.86 -0.28 -9.95 16 13 C 0.53 9.94 7.85 -10.99 -0.09 9.86 16 14 O -0.52 -11.81 15.46 5.56 0.09 -11.72 16 15 C -0.15 -3.12 6.16 36.01 0.22 -2.90 16 16 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 17 C -0.54 -15.35 9.50 30.94 0.29 -15.05 16 18 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 19 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 20 N -0.87 -26.25 13.22 55.49 0.73 -25.52 16 21 Si 0.92 21.43 29.55 -169.99 -5.02 16.40 16 22 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 25 C -0.13 -1.36 7.64 -26.29 -0.20 -1.56 16 26 H 0.22 0.69 7.80 -54.10 -0.42 0.26 16 27 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.09 0.37 8.14 -51.92 -0.42 -0.05 16 29 H 0.03 0.20 8.13 -51.93 -0.42 -0.22 16 30 H 0.08 0.51 8.14 -51.92 -0.42 0.09 16 31 H 0.34 1.72 8.55 -39.29 -0.34 1.39 16 32 H 0.07 0.49 7.87 -51.93 -0.41 0.08 16 33 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.09 0.66 8.12 -51.93 -0.42 0.23 16 39 H 0.11 1.55 7.47 -51.93 -0.39 1.16 16 40 H 0.40 4.10 8.73 -40.82 -0.36 3.75 16 41 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 42 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 43 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 44 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 45 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 395.33 15.07 5.96 5.96 Total: -1.00 -34.47 395.33 -10.12 -44.59 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -7.37 Total: 1.92 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: -1.32 Total: -13.01 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: -0.24 Total: -40.28 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.09 Total: -11.72 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.47 -10.12 -44.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120665763.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.518 kcal (2) G-P(sol) polarization free energy of solvation -34.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds