Wall clock time and date at job start Tue Mar 31 2020 14:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47392 * 54.54995 * 3 2 1 5 5 N 1.46894 * 109.47497 * 179.97438 * 4 3 2 6 6 C 1.46898 * 111.00259 * 179.97438 * 5 4 3 7 7 C 1.53952 * 113.58187 * 155.00002 * 6 5 4 8 8 C 1.52909 * 86.78355 * 139.33751 * 7 6 5 9 9 C 1.52914 * 88.04315 * 335.10152 * 8 7 6 10 10 C 1.52906 * 121.13590 * 100.82048 * 8 7 6 11 11 C 1.53947 * 86.78053 * 100.82014 * 10 8 7 12 12 N 1.46500 * 113.58000 * 139.33884 * 11 10 8 13 13 C 1.34779 * 120.00169 * 154.99479 * 12 11 10 14 14 O 1.21282 * 119.99922 * 0.02562 * 13 12 11 15 15 C 1.50699 * 120.00037 * 180.02562 * 13 12 11 16 16 S 1.81000 * 109.46881 * 180.02562 * 15 13 12 17 17 C 1.76206 * 99.99929 * 180.02562 * 16 15 13 18 18 H 1.07998 * 119.99720 * 359.97438 * 17 16 15 19 19 C 1.38796 * 119.99847 * 180.02562 * 17 16 15 20 20 N 1.31625 * 120.00398 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99778 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47367 * 59.99618 * 21 19 17 23 23 H 1.48498 * 109.47311 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46831 * 299.99623 * 21 19 17 25 25 C 1.52901 * 121.13483 * 209.38235 * 8 7 6 26 26 H 4.44651 * 5.63229 * 179.97438 * 4 1 2 27 27 H 1.08995 * 109.47755 * 294.54466 * 3 2 1 28 28 H 1.09008 * 109.47072 * 174.54340 * 3 2 1 29 29 H 1.08995 * 109.47103 * 59.99071 * 4 3 2 30 30 H 1.09008 * 109.46477 * 299.99709 * 4 3 2 31 31 H 1.00901 * 111.00288 * 303.95537 * 5 4 3 32 32 H 1.09000 * 112.87573 * 23.86038 * 6 5 4 33 33 H 1.09000 * 113.66174 * 24.86408 * 7 6 5 34 34 H 1.08997 * 113.66115 * 253.81358 * 7 6 5 35 35 H 1.08994 * 113.66145 * 139.37314 * 9 8 7 36 36 H 1.09000 * 113.66281 * 270.43068 * 9 8 7 37 37 H 1.08999 * 113.66138 * 346.34394 * 10 8 7 38 38 H 1.09000 * 113.66105 * 215.29114 * 10 8 7 39 39 H 1.09001 * 113.57904 * 270.05247 * 11 10 8 40 40 H 0.96996 * 119.99986 * 335.00076 * 12 11 10 41 41 H 1.09000 * 109.47247 * 60.00371 * 15 13 12 42 42 H 1.09001 * 109.47358 * 299.99798 * 15 13 12 43 43 H 0.96996 * 120.00393 * 180.02562 * 20 19 17 44 44 H 1.09004 * 113.66496 * 144.71378 * 25 8 7 45 45 H 1.09002 * 113.66688 * 13.65390 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1564 -0.8357 -1.1751 5 7 4.6254 -0.8346 -1.1755 6 6 5.1522 -1.6302 -2.2923 7 6 6.5663 -1.2113 -2.7338 8 6 6.8695 -2.7030 -2.8789 9 6 5.7653 -2.9734 -1.8562 10 6 6.8616 -3.3817 -4.2491 11 6 8.3973 -3.2806 -4.2116 12 7 9.0758 -4.4743 -4.7223 13 6 10.3238 -4.3781 -5.2221 14 8 10.8853 -3.3034 -5.2486 15 6 11.0216 -5.6059 -5.7480 16 16 12.6696 -5.1542 -6.3447 17 6 13.2416 -6.7304 -6.8864 18 1 12.6058 -7.5980 -6.7895 19 6 14.5096 -6.8570 -7.4364 20 7 15.2846 -5.7997 -7.5540 21 14 15.1156 -8.5279 -8.0113 22 1 14.2119 -9.0449 -9.0702 23 1 16.4911 -8.3954 -8.5550 24 1 15.1260 -9.4719 -6.8649 25 6 8.2847 -3.2455 -2.6766 26 1 -1.0498 -0.0003 0.0000 27 1 3.0096 -0.4260 0.9347 28 1 3.0089 1.0239 -0.0977 29 1 2.7928 -0.4090 -2.1098 30 1 2.7935 -1.8590 -1.0773 31 1 4.9863 0.1073 -1.2003 32 1 4.4465 -1.7207 -3.1181 33 1 7.1428 -0.7221 -1.9486 34 1 6.5865 -0.6669 -3.6778 35 1 5.1458 -3.8366 -2.0993 36 1 6.1167 -2.9794 -0.8244 37 1 6.4024 -2.7794 -5.0330 38 1 6.4900 -4.4062 -4.2276 39 1 8.7841 -2.3573 -4.6428 40 1 8.6269 -5.3339 -4.7009 41 1 10.4418 -6.0304 -6.5676 42 1 11.1140 -6.3416 -4.9491 43 1 16.1706 -5.8881 -7.9387 44 1 8.3131 -4.2317 -2.2133 45 1 8.9625 -2.5344 -2.2044 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120665763.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:51 Heat of formation + Delta-G solvation = 27.995332 kcal Electronic energy + Delta-G solvation = -23019.485512 eV Core-core repulsion = 19550.650669 eV Total energy + Delta-G solvation = -3468.834843 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.74481 -40.22910 -37.86519 -36.09098 -34.58402 -34.31744 -32.96000 -30.59796 -29.50488 -27.66390 -26.79294 -26.73830 -24.37284 -23.38119 -21.87076 -21.41526 -19.85519 -18.95212 -18.81305 -17.84800 -17.45077 -16.87523 -16.81090 -16.53441 -16.39877 -16.11512 -15.98193 -15.43265 -15.05153 -14.76288 -14.50160 -14.25006 -13.75396 -13.71997 -13.59482 -13.42673 -13.22162 -13.16521 -12.94557 -12.86111 -12.68824 -12.62416 -12.28626 -11.84111 -11.77213 -11.54666 -11.16603 -11.12342 -11.08299 -11.00622 -10.94696 -10.70916 -10.27259 -9.97580 -9.38734 -8.66256 -8.33894 -6.12285 1.27970 1.44415 1.47774 1.57715 1.62070 1.84693 1.91379 2.27596 2.34973 3.00182 3.09410 3.33037 3.47574 3.51595 3.64052 3.68848 3.82060 3.91288 4.00617 4.04265 4.17086 4.27689 4.32043 4.42764 4.47591 4.51893 4.57950 4.78126 4.80020 4.88522 4.96684 4.98284 5.01301 5.04038 5.06594 5.10147 5.18981 5.25680 5.38662 5.41954 5.50432 5.64071 6.13942 6.20110 6.45946 6.56172 6.70668 7.07200 7.28623 8.75165 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.061333 B = 0.001561 C = 0.001541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.412004 B =17934.813256 C =18161.769365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.217 4.217 3 C -0.009 4.009 4 C 0.070 3.930 5 N -0.682 5.682 6 C 0.067 3.933 7 C -0.118 4.118 8 C -0.096 4.096 9 C -0.102 4.102 10 C -0.105 4.105 11 C 0.114 3.886 12 N -0.702 5.702 13 C 0.533 3.467 14 O -0.568 6.568 15 C -0.130 4.130 16 S -0.153 6.153 17 C -0.548 4.548 18 H 0.083 0.917 19 C 0.015 3.985 20 N -0.912 5.912 21 Si 0.998 3.002 22 H -0.262 1.262 23 H -0.279 1.279 24 H -0.262 1.262 25 C -0.134 4.134 26 H 0.241 0.759 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.032 0.968 30 H 0.068 0.932 31 H 0.349 0.651 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.108 0.892 39 H 0.087 0.913 40 H 0.416 0.584 41 H 0.110 0.890 42 H 0.109 0.891 43 H 0.271 0.729 44 H 0.093 0.907 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.674 6.976 13.949 33.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.218 4.218 3 C -0.046 4.046 4 C -0.059 4.059 5 N -0.313 5.313 6 C -0.042 4.042 7 C -0.156 4.156 8 C -0.097 4.097 9 C -0.140 4.140 10 C -0.143 4.143 11 C 0.009 3.991 12 N -0.355 5.355 13 C 0.319 3.681 14 O -0.447 6.447 15 C -0.282 4.282 16 S 0.074 5.926 17 C -0.696 4.696 18 H 0.101 0.899 19 C -0.190 4.190 20 N -0.548 5.548 21 Si 0.820 3.180 22 H -0.186 1.186 23 H -0.204 1.204 24 H -0.187 1.187 25 C -0.172 4.172 26 H 0.257 0.743 27 H 0.114 0.886 28 H 0.113 0.887 29 H 0.050 0.950 30 H 0.087 0.913 31 H 0.169 0.831 32 H 0.094 0.906 33 H 0.110 0.890 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.126 0.874 39 H 0.105 0.895 40 H 0.254 0.746 41 H 0.128 0.872 42 H 0.127 0.873 43 H 0.080 0.920 44 H 0.111 0.889 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -28.544 8.325 14.301 32.994 hybrid contribution -0.331 -1.591 -1.115 1.971 sum -28.876 6.733 13.187 32.451 Atomic orbital electron populations 1.25715 0.97002 1.00191 0.99906 1.23587 0.95454 1.01314 1.01444 1.18673 0.83849 1.01803 1.00282 1.21824 0.87752 1.00070 0.96239 1.60560 1.06850 1.18825 1.45102 1.22955 0.94297 0.95200 0.91783 1.22983 0.96041 0.94657 1.01896 1.21979 0.94703 0.96728 0.96339 1.22826 0.95591 0.96937 0.98668 1.23050 0.92706 1.02460 0.96122 1.22609 0.93119 0.88656 0.94754 1.45783 1.14520 1.12571 1.62627 1.20115 0.82166 0.89239 0.76555 1.90680 1.66302 1.30761 1.56918 1.23390 1.00386 0.99584 1.04792 1.85579 1.11259 1.16030 1.79698 1.23185 1.04283 0.94551 1.47589 0.89904 1.26119 0.95652 1.02287 0.94962 1.70175 1.09764 1.31673 1.43196 0.85012 0.77349 0.76782 0.78902 1.18625 1.20380 1.18652 1.23274 0.96508 1.02005 0.95460 0.74250 0.88556 0.88652 0.94987 0.91308 0.83120 0.90577 0.88981 0.91076 0.90990 0.89593 0.90057 0.87411 0.89475 0.74638 0.87208 0.87266 0.91987 0.88864 0.92255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.43 19.25 74.32 1.43 -1.00 16 2 C -0.22 -2.92 13.34 31.12 0.42 -2.50 16 3 C -0.01 -0.09 5.96 28.79 0.17 0.08 16 4 C 0.07 0.74 5.48 86.30 0.47 1.21 16 5 N -0.68 -7.22 6.56 -488.29 -3.20 -10.43 16 6 C 0.07 0.77 4.14 45.55 0.19 0.95 16 7 C -0.12 -1.53 7.41 30.89 0.23 -1.30 16 8 C -0.10 -1.36 1.11 -52.32 -0.06 -1.41 16 9 C -0.10 -1.26 7.64 30.89 0.24 -1.03 16 10 C -0.11 -1.50 7.59 30.88 0.23 -1.27 16 11 C 0.11 2.51 4.24 45.62 0.19 2.71 16 12 N -0.70 -17.56 5.35 -439.53 -2.35 -19.92 16 13 C 0.53 19.80 7.85 87.66 0.69 20.49 16 14 O -0.57 -26.70 15.46 -3.04 -0.05 -26.74 16 15 C -0.13 -5.18 6.16 71.24 0.44 -4.74 16 16 S -0.15 -8.56 20.57 -56.49 -1.16 -9.72 16 17 C -0.55 -31.46 9.50 67.95 0.65 -30.81 16 18 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 19 C 0.01 0.83 5.49 84.86 0.47 1.30 16 20 N -0.91 -56.29 13.22 21.65 0.29 -56.01 16 21 Si 1.00 43.59 29.55 68.60 2.03 45.61 16 22 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 23 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 24 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 25 C -0.13 -2.54 7.64 30.88 0.24 -2.30 16 26 H 0.24 1.08 7.80 -4.43 -0.03 1.04 16 27 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.10 0.72 8.14 -2.38 -0.02 0.70 16 29 H 0.03 0.34 8.13 -2.39 -0.02 0.33 16 30 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 31 H 0.35 3.00 8.55 -89.69 -0.77 2.24 16 32 H 0.08 0.85 7.87 -2.39 -0.02 0.83 16 33 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.11 1.17 8.12 -2.39 -0.02 1.16 16 39 H 0.09 2.44 7.47 -2.39 -0.02 2.42 16 40 H 0.42 7.38 8.73 -92.71 -0.81 6.57 16 41 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 42 H 0.11 3.90 8.14 -2.40 -0.02 3.88 16 43 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 44 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 45 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -77.14 395.33 0.95 -76.20 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: -0.59 Total: 20.63 kcal Atomic # 6 Polarization: -25.62 SS G_CDS: 5.99 Total: -19.63 kcal Atomic # 7 Polarization: -81.08 SS G_CDS: -5.27 Total: -86.35 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -0.05 Total: -26.74 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 16 Polarization: -8.56 SS G_CDS: -1.16 Total: -9.72 kcal Total: -77.14 0.95 -76.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120665763.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.193 kcal (2) G-P(sol) polarization free energy of solvation -77.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds