Wall clock time and date at job start Tue Mar 31 2020 14:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47194 * 1 3 3 C 1.17408 * 179.97438 * 2 1 4 4 C 1.47201 * 179.97438 * 137.63592 * 3 2 1 5 5 N 1.46904 * 109.46911 * 242.72283 * 4 3 2 6 6 C 1.46894 * 111.00088 * 179.97438 * 5 4 3 7 7 C 1.53947 * 113.58650 * 205.00327 * 6 5 4 8 8 C 1.52908 * 86.78697 * 220.66715 * 7 6 5 9 9 C 1.52914 * 88.04177 * 24.89754 * 8 7 6 10 10 C 1.52906 * 121.13950 * 150.61692 * 8 7 6 11 11 C 1.53947 * 86.78053 * 100.81910 * 10 8 7 12 12 N 1.46500 * 113.58000 * 139.33884 * 11 10 8 13 13 C 1.34779 * 120.00169 * 154.99479 * 12 11 10 14 14 O 1.21282 * 119.99922 * 0.02562 * 13 12 11 15 15 C 1.50699 * 120.00037 * 180.02562 * 13 12 11 16 16 S 1.81000 * 109.46881 * 180.02562 * 15 13 12 17 17 C 1.76206 * 99.99929 * 180.02562 * 16 15 13 18 18 H 1.07998 * 119.99720 * 359.97438 * 17 16 15 19 19 C 1.38796 * 119.99847 * 180.02562 * 17 16 15 20 20 N 1.31638 * 119.99705 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 120.00469 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.46939 * 90.00148 * 21 19 17 23 23 H 1.48496 * 109.47561 * 210.00294 * 21 19 17 24 24 H 1.48498 * 109.46932 * 330.00626 * 21 19 17 25 25 C 1.52901 * 121.13284 * 259.18015 * 8 7 6 26 26 H 1.09002 * 109.47026 * 159.63489 * 1 2 3 27 27 H 1.08994 * 109.47213 * 279.63401 * 1 2 3 28 28 H 1.08999 * 109.47188 * 39.63954 * 1 2 3 29 29 H 1.08994 * 109.46952 * 122.73032 * 4 3 2 30 30 H 1.08999 * 109.47380 * 2.72522 * 4 3 2 31 31 H 1.00900 * 111.00116 * 303.95744 * 5 4 3 32 32 H 1.09008 * 112.82360 * 336.09487 * 6 5 4 33 33 H 1.08995 * 113.66524 * 106.19017 * 7 6 5 34 34 H 1.09008 * 113.65570 * 335.13474 * 7 6 5 35 35 H 1.08997 * 113.66574 * 89.57428 * 9 8 7 36 36 H 1.09000 * 113.66070 * 220.63734 * 9 8 7 37 37 H 1.08999 * 113.66138 * 346.34290 * 10 8 7 38 38 H 1.09000 * 113.66105 * 215.29010 * 10 8 7 39 39 H 1.09004 * 113.57596 * 270.04832 * 11 10 8 40 40 H 0.96996 * 119.99986 * 335.00076 * 12 11 10 41 41 H 1.09000 * 109.47247 * 60.00371 * 15 13 12 42 42 H 1.09001 * 109.47358 * 299.99798 * 15 13 12 43 43 H 0.96996 * 119.99710 * 179.97438 * 20 19 17 44 44 H 1.09004 * 113.66496 * 144.71013 * 25 8 7 45 45 H 1.09002 * 113.66688 * 13.65025 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4719 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0017 -0.0004 5 7 4.6075 0.6368 1.2304 6 6 6.0759 0.6554 1.2652 7 6 6.6577 0.7192 2.6891 8 6 7.6857 1.7047 2.1323 9 6 6.6797 2.0527 1.0345 10 6 8.2988 2.7913 3.0162 11 6 9.5345 1.8802 3.1296 12 7 10.8056 2.6051 3.0589 13 6 11.9119 2.0822 3.6239 14 8 11.8553 1.0114 4.1905 15 6 13.2194 2.8282 3.5517 16 16 14.5056 1.8743 4.3954 17 6 15.8837 2.9478 4.1646 18 1 15.7601 3.8775 3.6291 19 6 17.1281 2.5980 4.6699 20 7 18.1578 3.3997 4.4970 21 14 17.3420 0.9895 5.5954 22 1 17.7037 -0.0875 4.6391 23 1 18.4213 1.1386 6.6043 24 1 16.0709 0.6387 6.2784 25 6 9.1064 1.2555 1.7893 26 1 -0.3633 -0.9635 -0.3576 27 1 -0.3633 0.1720 1.0131 28 1 -0.3633 0.7914 -0.6556 29 1 4.4806 0.5576 -0.8650 30 1 4.4822 -1.0245 -0.0494 31 1 4.2313 1.5676 1.3314 32 1 6.5234 -0.1220 0.6458 33 1 7.0919 -0.2218 3.0268 34 1 5.9793 1.1606 3.4193 35 1 6.0077 2.8689 1.2996 36 1 7.1317 2.1769 0.0504 37 1 7.7734 2.9354 3.9603 38 1 8.4915 3.7262 2.4900 39 1 9.4893 1.1868 3.9695 40 1 10.8510 3.4613 2.6056 41 1 13.1108 3.7992 4.0348 42 1 13.4991 2.9709 2.5079 43 1 19.0274 3.1554 4.8504 44 1 9.5261 1.7588 0.9183 45 1 9.2262 0.1727 1.7532 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120671749.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:56 Heat of formation + Delta-G solvation = 48.007315 kcal Electronic energy + Delta-G solvation = -22957.046629 eV Core-core repulsion = 19489.079571 eV Total energy + Delta-G solvation = -3467.967058 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.05615 -39.04924 -37.06808 -35.11148 -33.58286 -32.43759 -32.14243 -29.37385 -28.78663 -26.19542 -26.08276 -25.63214 -25.42067 -23.05187 -21.11654 -20.45756 -18.38431 -17.78673 -17.29959 -16.58078 -16.25539 -16.14064 -15.83432 -15.15297 -15.00246 -14.94627 -14.64058 -14.28504 -14.02703 -13.92048 -13.60210 -13.45486 -13.14874 -13.08602 -12.91751 -12.79294 -12.55585 -12.45156 -12.18020 -11.60294 -11.46485 -11.26700 -11.00616 -10.94319 -10.59720 -10.43992 -10.40371 -10.20189 -10.18906 -9.84446 -9.46892 -9.00609 -8.90590 -8.82975 -8.49486 -6.91225 -6.28713 -4.00338 2.19826 2.32187 2.78524 2.96386 3.32102 3.35656 3.51138 3.65741 3.67263 3.95044 4.06264 4.16588 4.31448 4.33797 4.46833 4.53435 4.65903 4.76121 4.86887 4.96118 4.97867 5.10502 5.10597 5.13596 5.16311 5.21854 5.34333 5.36956 5.39363 5.44779 5.47905 5.52441 5.61731 5.72855 5.75046 5.77542 5.90336 5.99407 6.02830 6.14717 6.56070 6.62541 6.86255 7.24698 7.64753 7.94427 8.41784 8.51352 9.17626 10.80574 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.052032 B = 0.001616 C = 0.001596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.004585 B =17327.377463 C =17544.507971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 C -0.180 4.180 3 C -0.189 4.189 4 C 0.172 3.828 5 N -0.676 5.676 6 C 0.068 3.932 7 C -0.102 4.102 8 C -0.102 4.102 9 C -0.151 4.151 10 C -0.130 4.130 11 C 0.129 3.871 12 N -0.727 5.727 13 C 0.531 3.469 14 O -0.520 6.520 15 C -0.125 4.125 16 S -0.142 6.142 17 C -0.522 4.522 18 H 0.088 0.912 19 C 0.096 3.904 20 N -0.881 5.881 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C -0.128 4.128 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.054 0.946 30 H 0.095 0.905 31 H 0.346 0.654 32 H 0.100 0.900 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.114 0.886 40 H 0.399 0.601 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.271 0.729 44 H 0.087 0.913 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.376 -2.363 -10.229 34.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.181 4.181 3 C -0.189 4.189 4 C 0.045 3.955 5 N -0.307 5.307 6 C -0.042 4.042 7 C -0.140 4.140 8 C -0.103 4.103 9 C -0.190 4.190 10 C -0.169 4.169 11 C 0.024 3.976 12 N -0.380 5.380 13 C 0.317 3.683 14 O -0.394 6.394 15 C -0.276 4.276 16 S 0.084 5.916 17 C -0.669 4.669 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.518 5.518 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 C -0.167 4.167 26 H 0.099 0.901 27 H 0.100 0.900 28 H 0.097 0.903 29 H 0.072 0.928 30 H 0.113 0.887 31 H 0.165 0.835 32 H 0.118 0.882 33 H 0.093 0.907 34 H 0.108 0.892 35 H 0.103 0.897 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.105 0.895 39 H 0.132 0.868 40 H 0.233 0.767 41 H 0.115 0.885 42 H 0.114 0.886 43 H 0.081 0.919 44 H 0.105 0.895 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -32.310 -4.701 -8.871 33.834 hybrid contribution 0.695 1.873 -1.235 2.349 sum -31.615 -2.828 -10.105 33.311 Atomic orbital electron populations 1.18874 0.84627 1.03037 1.03178 1.22455 0.93940 1.01160 1.00574 1.22163 0.93417 1.01671 1.01645 1.18832 0.84197 1.00771 0.91724 1.60429 1.07653 1.26273 1.36301 1.23073 0.85868 0.96924 0.98325 1.22811 0.95921 0.98920 0.96364 1.22080 0.93378 0.97622 0.97270 1.23507 0.98756 0.97763 0.98972 1.23180 0.96125 0.97450 1.00113 1.22402 0.81757 0.94951 0.98514 1.45973 1.08527 1.24473 1.58985 1.20319 0.84861 0.85794 0.77311 1.90692 1.85215 1.21544 1.41986 1.23294 0.95450 1.03251 1.05582 1.84789 1.02949 1.31192 1.72645 1.22325 0.93739 1.08294 1.42571 0.89413 1.24709 0.94605 0.97151 0.94791 1.69942 1.00584 1.36748 1.44479 0.86734 0.80484 0.83695 0.80945 1.19208 1.19931 1.15914 1.23217 0.93230 1.01682 0.98534 0.90142 0.90002 0.90264 0.92790 0.88740 0.83454 0.88222 0.90750 0.89194 0.89700 0.91254 0.90622 0.89511 0.86777 0.76667 0.88483 0.88551 0.91950 0.89468 0.90737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.18 10.32 34.37 0.35 0.18 16 2 C -0.18 -1.45 14.13 -37.12 -0.52 -1.98 16 3 C -0.19 -1.61 13.60 -37.12 -0.50 -2.12 16 4 C 0.17 1.16 6.01 -6.61 -0.04 1.13 16 5 N -0.68 -4.73 6.59 -108.76 -0.72 -5.44 16 6 C 0.07 0.44 4.18 -66.73 -0.28 0.17 16 7 C -0.10 -0.76 7.64 -26.29 -0.20 -0.96 16 8 C -0.10 -0.75 1.11 -154.72 -0.17 -0.92 16 9 C -0.15 -0.92 7.46 -26.28 -0.20 -1.12 16 10 C -0.13 -1.03 7.59 -26.29 -0.20 -1.23 16 11 C 0.13 1.41 4.24 -66.95 -0.28 1.12 16 12 N -0.73 -9.05 5.35 -52.86 -0.28 -9.33 16 13 C 0.53 9.35 7.85 -10.99 -0.09 9.27 16 14 O -0.52 -11.18 15.46 5.56 0.09 -11.09 16 15 C -0.13 -2.41 6.16 36.01 0.22 -2.19 16 16 S -0.14 -3.61 18.55 -107.50 -1.99 -5.61 16 17 C -0.52 -15.07 10.04 30.94 0.31 -14.76 16 18 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 19 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 20 N -0.88 -26.63 13.97 55.49 0.78 -25.86 16 21 Si 0.86 21.84 27.74 -169.99 -4.72 17.13 16 22 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16 25 C -0.13 -1.17 7.64 -26.29 -0.20 -1.37 16 26 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 27 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.09 0.59 8.13 -51.93 -0.42 0.17 16 31 H 0.35 2.23 8.17 -39.29 -0.32 1.91 16 32 H 0.10 0.64 7.87 -51.92 -0.41 0.23 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.09 0.67 8.14 -51.92 -0.42 0.25 16 35 H 0.08 0.48 7.82 -51.93 -0.41 0.07 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.09 0.61 8.12 -51.93 -0.42 0.19 16 39 H 0.11 1.49 7.47 -51.93 -0.39 1.10 16 40 H 0.40 3.83 8.73 -40.82 -0.36 3.48 16 41 H 0.10 1.74 8.14 -51.92 -0.42 1.31 16 42 H 0.10 1.72 8.14 -51.91 -0.42 1.30 16 43 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 44 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 392.42 15.07 5.91 5.91 Total: -1.00 -34.51 392.42 -10.20 -44.72 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -7.37 Total: 1.63 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: -1.90 Total: -12.07 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: -0.22 Total: -40.63 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.09 Total: -11.09 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.72 Total: 17.13 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.51 -10.20 -44.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120671749.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.725 kcal (2) G-P(sol) polarization free energy of solvation -34.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds