Wall clock time and date at job start Tue Mar 31 2020 14:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47194 * 1 3 3 C 1.17408 * 179.97438 * 2 1 4 4 C 1.47201 * 179.97438 * 137.63592 * 3 2 1 5 5 N 1.46904 * 109.46911 * 242.72283 * 4 3 2 6 6 C 1.46894 * 111.00088 * 179.97438 * 5 4 3 7 7 C 1.53947 * 113.58650 * 205.00327 * 6 5 4 8 8 C 1.52908 * 86.78697 * 220.66715 * 7 6 5 9 9 C 1.52914 * 88.04177 * 24.89754 * 8 7 6 10 10 C 1.52906 * 121.13950 * 150.61692 * 8 7 6 11 11 C 1.53947 * 86.78053 * 100.81910 * 10 8 7 12 12 N 1.46500 * 113.58000 * 139.33884 * 11 10 8 13 13 C 1.34779 * 120.00169 * 154.99479 * 12 11 10 14 14 O 1.21282 * 119.99922 * 0.02562 * 13 12 11 15 15 C 1.50699 * 120.00037 * 180.02562 * 13 12 11 16 16 S 1.81000 * 109.46881 * 180.02562 * 15 13 12 17 17 C 1.76206 * 99.99929 * 180.02562 * 16 15 13 18 18 H 1.07998 * 119.99720 * 359.97438 * 17 16 15 19 19 C 1.38796 * 119.99847 * 180.02562 * 17 16 15 20 20 N 1.31638 * 119.99705 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 120.00469 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.46939 * 90.00148 * 21 19 17 23 23 H 1.48496 * 109.47561 * 210.00294 * 21 19 17 24 24 H 1.48498 * 109.46932 * 330.00626 * 21 19 17 25 25 C 1.52901 * 121.13284 * 259.18015 * 8 7 6 26 26 H 1.09002 * 109.47026 * 159.63489 * 1 2 3 27 27 H 1.08994 * 109.47213 * 279.63401 * 1 2 3 28 28 H 1.08999 * 109.47188 * 39.63954 * 1 2 3 29 29 H 1.08994 * 109.46952 * 122.73032 * 4 3 2 30 30 H 1.08999 * 109.47380 * 2.72522 * 4 3 2 31 31 H 1.00900 * 111.00116 * 303.95744 * 5 4 3 32 32 H 1.09008 * 112.82360 * 336.09487 * 6 5 4 33 33 H 1.08995 * 113.66524 * 106.19017 * 7 6 5 34 34 H 1.09008 * 113.65570 * 335.13474 * 7 6 5 35 35 H 1.08997 * 113.66574 * 89.57428 * 9 8 7 36 36 H 1.09000 * 113.66070 * 220.63734 * 9 8 7 37 37 H 1.08999 * 113.66138 * 346.34290 * 10 8 7 38 38 H 1.09000 * 113.66105 * 215.29010 * 10 8 7 39 39 H 1.09004 * 113.57596 * 270.04832 * 11 10 8 40 40 H 0.96996 * 119.99986 * 335.00076 * 12 11 10 41 41 H 1.09000 * 109.47247 * 60.00371 * 15 13 12 42 42 H 1.09001 * 109.47358 * 299.99798 * 15 13 12 43 43 H 0.96996 * 119.99710 * 179.97438 * 20 19 17 44 44 H 1.09004 * 113.66496 * 144.71013 * 25 8 7 45 45 H 1.09002 * 113.66688 * 13.65025 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4719 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0017 -0.0004 5 7 4.6075 0.6368 1.2304 6 6 6.0759 0.6554 1.2652 7 6 6.6577 0.7192 2.6891 8 6 7.6857 1.7047 2.1323 9 6 6.6797 2.0527 1.0345 10 6 8.2988 2.7913 3.0162 11 6 9.5345 1.8802 3.1296 12 7 10.8056 2.6051 3.0589 13 6 11.9119 2.0822 3.6239 14 8 11.8553 1.0114 4.1905 15 6 13.2194 2.8282 3.5517 16 16 14.5056 1.8743 4.3954 17 6 15.8837 2.9478 4.1646 18 1 15.7601 3.8775 3.6291 19 6 17.1281 2.5980 4.6699 20 7 18.1578 3.3997 4.4970 21 14 17.3420 0.9895 5.5954 22 1 17.7037 -0.0875 4.6391 23 1 18.4213 1.1386 6.6043 24 1 16.0709 0.6387 6.2784 25 6 9.1064 1.2555 1.7893 26 1 -0.3633 -0.9635 -0.3576 27 1 -0.3633 0.1720 1.0131 28 1 -0.3633 0.7914 -0.6556 29 1 4.4806 0.5576 -0.8650 30 1 4.4822 -1.0245 -0.0494 31 1 4.2313 1.5676 1.3314 32 1 6.5234 -0.1220 0.6458 33 1 7.0919 -0.2218 3.0268 34 1 5.9793 1.1606 3.4193 35 1 6.0077 2.8689 1.2996 36 1 7.1317 2.1769 0.0504 37 1 7.7734 2.9354 3.9603 38 1 8.4915 3.7262 2.4900 39 1 9.4893 1.1868 3.9695 40 1 10.8510 3.4613 2.6056 41 1 13.1108 3.7992 4.0348 42 1 13.4991 2.9709 2.5079 43 1 19.0274 3.1554 4.8504 44 1 9.5261 1.7588 0.9183 45 1 9.2262 0.1727 1.7532 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120671749.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:55 Heat of formation + Delta-G solvation = 25.012380 kcal Electronic energy + Delta-G solvation = -22958.043765 eV Core-core repulsion = 19489.079571 eV Total energy + Delta-G solvation = -3468.964193 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.78828 -40.28912 -37.79850 -35.82870 -34.67677 -34.37453 -32.99925 -30.62684 -29.42119 -27.85963 -26.80143 -26.72123 -25.96604 -23.88906 -21.89693 -21.62639 -19.91489 -18.94417 -17.91713 -17.80183 -17.41502 -17.06252 -16.76338 -16.41660 -16.30399 -15.94043 -15.78192 -15.12766 -14.97629 -14.79394 -14.67214 -14.30412 -14.17472 -13.95268 -13.79071 -13.60596 -13.48889 -13.34716 -13.16741 -13.02702 -12.98610 -12.66252 -12.40589 -12.15959 -11.88319 -11.58253 -11.17247 -11.08755 -11.01718 -10.95277 -10.72090 -10.70528 -10.53301 -10.01248 -9.33536 -8.99642 -8.51848 -6.22581 0.99660 1.31190 1.47080 1.56495 1.56835 1.63247 1.75505 2.23900 2.29595 2.72642 2.86618 3.15760 3.44010 3.44642 3.53381 3.65696 3.84290 3.87719 3.95120 3.96250 4.24680 4.35110 4.45566 4.47862 4.48383 4.52421 4.74739 4.78559 4.79089 4.82187 4.85449 4.87849 4.94065 4.98787 5.04547 5.07396 5.08843 5.24534 5.32750 5.43053 5.61799 5.70558 6.05299 6.11107 6.38367 6.51771 6.69496 6.93614 7.22950 8.60623 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.052032 B = 0.001616 C = 0.001596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.004585 B =17327.377463 C =17544.507971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 C -0.192 4.192 3 C -0.220 4.220 4 C 0.174 3.826 5 N -0.684 5.684 6 C 0.072 3.928 7 C -0.107 4.107 8 C -0.094 4.094 9 C -0.138 4.138 10 C -0.116 4.116 11 C 0.114 3.886 12 N -0.701 5.701 13 C 0.535 3.465 14 O -0.565 6.565 15 C -0.112 4.112 16 S -0.178 6.178 17 C -0.529 4.529 18 H 0.062 0.938 19 C 0.047 3.953 20 N -0.917 5.917 21 Si 0.914 3.086 22 H -0.262 1.262 23 H -0.259 1.259 24 H -0.238 1.238 25 C -0.124 4.124 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.066 0.934 30 H 0.095 0.905 31 H 0.349 0.651 32 H 0.100 0.900 33 H 0.062 0.938 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.106 0.894 39 H 0.089 0.911 40 H 0.417 0.583 41 H 0.114 0.886 42 H 0.113 0.887 43 H 0.277 0.723 44 H 0.097 0.903 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.522 -2.007 -11.057 36.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.193 4.193 3 C -0.220 4.220 4 C 0.046 3.954 5 N -0.314 5.314 6 C -0.038 4.038 7 C -0.145 4.145 8 C -0.095 4.095 9 C -0.177 4.177 10 C -0.154 4.154 11 C 0.009 3.991 12 N -0.354 5.354 13 C 0.320 3.680 14 O -0.444 6.444 15 C -0.263 4.263 16 S 0.049 5.951 17 C -0.677 4.677 18 H 0.081 0.919 19 C -0.158 4.158 20 N -0.555 5.555 21 Si 0.736 3.264 22 H -0.187 1.187 23 H -0.183 1.183 24 H -0.162 1.162 25 C -0.163 4.163 26 H 0.111 0.889 27 H 0.110 0.890 28 H 0.111 0.889 29 H 0.084 0.916 30 H 0.113 0.887 31 H 0.169 0.831 32 H 0.118 0.882 33 H 0.080 0.920 34 H 0.109 0.891 35 H 0.114 0.886 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.124 0.876 39 H 0.107 0.893 40 H 0.254 0.746 41 H 0.132 0.868 42 H 0.132 0.868 43 H 0.086 0.914 44 H 0.115 0.885 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -34.492 -4.303 -9.729 36.096 hybrid contribution 1.206 1.828 -1.051 2.429 sum -33.286 -2.475 -10.780 35.076 Atomic orbital electron populations 1.19089 0.82543 1.04246 1.04195 1.23384 0.95257 1.00637 1.00054 1.22730 0.94382 1.02483 1.02441 1.18865 0.83493 1.01004 0.92013 1.60383 1.07820 1.26567 1.36661 1.23018 0.85734 0.97486 0.97560 1.22842 0.96115 0.98472 0.97060 1.21943 0.92660 0.97210 0.97692 1.23448 0.97998 0.97610 0.98629 1.23155 0.93827 0.97761 1.00667 1.22616 0.81712 0.95912 0.98866 1.45778 1.07648 1.24831 1.57126 1.20011 0.85367 0.85099 0.77501 1.90682 1.85815 1.23426 1.44436 1.23291 0.94251 1.02963 1.05781 1.84730 1.03956 1.32215 1.74211 1.22471 0.95361 1.07941 1.41933 0.91936 1.25544 0.94415 1.00232 0.95629 1.70018 1.01283 1.38532 1.45692 0.85877 0.80599 0.79858 0.80104 1.18691 1.18275 1.16158 1.23189 0.94427 1.01016 0.97636 0.88940 0.89042 0.88856 0.91640 0.88664 0.83108 0.88153 0.91970 0.89114 0.88626 0.90566 0.90263 0.87614 0.89307 0.74586 0.86829 0.86846 0.91363 0.88453 0.91884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.32 10.32 70.17 0.72 0.40 16 2 C -0.19 -2.92 14.13 31.12 0.44 -2.49 16 3 C -0.22 -3.61 13.60 31.12 0.42 -3.19 16 4 C 0.17 2.17 6.01 84.50 0.51 2.68 16 5 N -0.68 -8.62 6.59 -498.01 -3.28 -11.90 16 6 C 0.07 0.82 4.18 45.55 0.19 1.01 16 7 C -0.11 -1.45 7.64 30.88 0.24 -1.22 16 8 C -0.09 -1.18 1.11 -52.32 -0.06 -1.23 16 9 C -0.14 -1.29 7.46 30.89 0.23 -1.06 16 10 C -0.12 -1.53 7.59 30.88 0.23 -1.29 16 11 C 0.11 2.31 4.24 45.62 0.19 2.50 16 12 N -0.70 -16.07 5.35 -439.52 -2.35 -18.43 16 13 C 0.53 18.27 7.85 87.66 0.69 18.96 16 14 O -0.57 -24.32 15.46 -3.04 -0.05 -24.37 16 15 C -0.11 -4.19 6.16 71.24 0.44 -3.75 16 16 S -0.18 -9.02 18.55 -56.49 -1.05 -10.07 16 17 C -0.53 -30.91 10.04 67.95 0.68 -30.23 16 18 H 0.06 3.84 8.03 -2.91 -0.02 3.81 16 19 C 0.05 2.78 5.50 84.86 0.47 3.24 16 20 N -0.92 -55.95 13.97 21.65 0.30 -55.65 16 21 Si 0.91 45.19 27.74 68.60 1.90 47.09 16 22 H -0.26 -12.65 7.11 99.48 0.71 -11.95 16 23 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 24 H -0.24 -11.77 6.74 99.48 0.67 -11.10 16 25 C -0.12 -2.06 7.64 30.88 0.24 -1.82 16 26 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 27 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.10 1.13 8.13 -2.39 -0.02 1.11 16 31 H 0.35 3.93 8.17 -89.69 -0.73 3.20 16 32 H 0.10 1.14 7.87 -2.38 -0.02 1.13 16 33 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 35 H 0.10 0.75 7.82 -2.39 -0.02 0.73 16 36 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.11 1.05 8.12 -2.39 -0.02 1.03 16 39 H 0.09 2.32 7.47 -2.38 -0.02 2.30 16 40 H 0.42 6.71 8.73 -92.71 -0.81 5.90 16 41 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 42 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 43 H 0.28 15.61 8.31 -92.71 -0.77 14.84 16 44 H 0.10 1.44 8.14 -2.38 -0.02 1.43 16 45 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -75.53 392.42 0.53 -75.00 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -0.58 Total: 15.81 kcal Atomic # 6 Polarization: -23.12 SS G_CDS: 5.63 Total: -17.49 kcal Atomic # 7 Polarization: -80.65 SS G_CDS: -5.33 Total: -85.98 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: -0.05 Total: -24.37 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.90 Total: 47.09 kcal Atomic # 16 Polarization: -9.02 SS G_CDS: -1.05 Total: -10.07 kcal Total: -75.53 0.53 -75.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120671749.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.008 kcal (2) G-P(sol) polarization free energy of solvation -75.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds