Wall clock time and date at job start Tue Mar 31 2020 13:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47414 * 2 1 4 4 C 1.52999 * 109.47275 * 65.00222 * 3 2 1 5 5 C 1.52998 * 109.47275 * 186.03938 * 4 3 2 6 6 C 1.53002 * 109.47175 * 185.00107 * 3 2 1 7 7 N 1.46497 * 109.47189 * 63.25040 * 6 3 2 8 8 C 1.46499 * 119.99966 * 263.91714 * 7 6 3 9 9 C 1.50701 * 109.46927 * 269.99645 * 8 7 6 10 10 H 1.08004 * 119.99788 * 359.97438 * 9 8 7 11 11 C 1.37879 * 120.00201 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99801 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00043 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47156 * 60.00102 * 13 11 9 15 15 H 1.48504 * 109.47025 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47098 * 299.99883 * 13 11 9 17 17 C 1.34778 * 120.00150 * 83.91142 * 7 6 3 18 18 O 1.21727 * 120.00112 * 355.32181 * 17 7 6 19 19 C 1.46245 * 120.00278 * 175.31621 * 17 7 6 20 20 C 1.35236 * 120.00352 * 179.72480 * 19 17 7 21 21 C 1.46406 * 120.00447 * 179.97438 * 20 19 17 22 22 N 1.30830 * 125.55367 * 179.97438 * 21 20 19 23 23 C 1.30807 * 115.81228 * 180.02562 * 22 21 20 24 24 C 1.34170 * 115.80563 * 359.97438 * 23 22 21 25 25 S 1.71059 * 109.15658 * 359.73265 * 24 23 22 26 26 H 1.09001 * 109.47522 * 59.99840 * 1 2 3 27 27 H 1.09000 * 109.47810 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47254 * 300.00261 * 1 2 3 29 29 H 1.09008 * 109.46731 * 239.99827 * 2 1 3 30 30 H 1.08996 * 109.47083 * 120.00331 * 2 1 3 31 31 H 1.08998 * 109.47236 * 305.00274 * 3 2 1 32 32 H 1.09007 * 109.46733 * 306.03674 * 4 3 2 33 33 H 1.09003 * 109.47342 * 66.03425 * 4 3 2 34 34 H 1.08997 * 109.47240 * 303.69815 * 5 4 3 35 35 H 1.08998 * 109.47268 * 63.69972 * 5 4 3 36 36 H 1.09004 * 109.46959 * 183.69843 * 5 4 3 37 37 H 1.08996 * 109.47079 * 303.24910 * 6 3 2 38 38 H 1.09000 * 109.47179 * 183.24756 * 6 3 2 39 39 H 1.09001 * 109.47385 * 29.99520 * 8 7 6 40 40 H 1.08997 * 109.47412 * 149.99754 * 8 7 6 41 41 H 0.96993 * 120.00086 * 180.02562 * 12 11 9 42 42 H 1.08006 * 119.99866 * 0.02562 * 19 17 7 43 43 H 1.08002 * 120.00135 * 0.02562 * 20 19 17 44 44 H 1.08001 * 122.10006 * 180.02562 * 23 22 21 45 45 H 1.08000 * 125.41975 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.6354 2.1265 1.3074 5 6 2.0122 3.6080 1.2456 6 6 3.5649 1.4442 -0.1258 7 7 3.9494 0.8592 -1.4126 8 6 4.3166 -0.5568 -1.4931 9 6 5.7994 -0.7047 -1.2687 10 1 6.4076 0.1688 -1.0850 11 6 6.3798 -1.9550 -1.2980 12 7 5.6394 -3.0185 -1.5222 13 14 8.2177 -2.1384 -1.0192 14 1 8.5698 -1.6108 0.3236 15 1 8.5900 -3.5736 -1.1009 16 1 8.9546 -1.3764 -2.0592 17 6 3.9653 1.6236 -2.5226 18 8 3.5790 2.7769 -2.4729 19 6 4.4467 1.0675 -3.7866 20 6 4.4574 1.8328 -4.9016 21 6 4.9398 1.2764 -6.1669 22 7 4.9973 1.9162 -7.3066 23 6 5.4618 1.2329 -8.3206 24 6 5.8183 -0.0335 -8.0574 25 16 5.5446 -0.3609 -6.4009 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3635 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 1.6054 1.9815 -0.8418 32 1 0.5588 2.0310 1.4493 33 1 2.1550 1.6538 2.1408 34 1 3.0779 3.7036 1.0382 35 1 1.4429 4.0951 0.4540 36 1 1.7841 4.0810 2.2009 37 1 3.9969 0.8564 0.6841 38 1 3.9330 2.4685 -0.0678 39 1 3.7760 -1.1163 -0.7297 40 1 4.0579 -0.9438 -2.4787 41 1 6.0476 -3.8982 -1.5424 42 1 4.7891 0.0442 -3.8308 43 1 4.1108 2.8548 -4.8584 44 1 5.5535 1.6615 -9.3078 45 1 6.2183 -0.7334 -8.7760 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123521940.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:58 Heat of formation + Delta-G solvation = 4.075742 kcal Electronic energy + Delta-G solvation = -25128.531900 eV Core-core repulsion = 21658.659826 eV Total energy + Delta-G solvation = -3469.872074 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.54928 -39.29596 -36.98424 -34.60480 -33.58918 -32.50331 -31.51883 -29.77828 -28.43570 -26.99174 -25.73188 -24.09954 -23.25000 -22.35346 -21.60199 -19.84809 -19.58689 -18.35887 -17.45710 -16.73318 -16.45312 -15.72310 -15.40235 -14.68201 -14.49121 -14.37984 -14.35165 -13.98648 -13.79372 -13.59872 -13.16369 -13.04007 -12.77742 -12.43329 -12.30405 -12.02735 -11.70993 -11.51216 -11.48251 -11.25635 -11.12904 -11.02157 -10.92064 -10.74273 -10.41372 -10.28338 -10.22281 -10.07194 -9.93811 -9.73485 -9.68287 -9.35321 -9.22842 -8.59668 -8.19761 -7.69720 -6.23054 -4.30788 0.29708 1.42196 1.88384 1.88862 3.06347 3.21139 3.26304 3.29483 3.74493 3.95501 4.26911 4.40394 5.05703 5.10062 5.14864 5.16107 5.17664 5.26966 5.44608 5.49848 5.57153 5.58890 5.65723 5.70830 5.89512 5.94229 6.02399 6.07287 6.10120 6.16830 6.24118 6.29243 6.39161 6.40954 6.44741 6.56382 6.60621 6.66602 6.79769 6.81667 7.11729 7.49488 7.71532 7.74163 7.99797 8.25919 8.73455 8.92642 9.37355 10.83064 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.008739 B = 0.004740 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3203.313463 B = 5906.147378 C = 8007.983229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.102 4.102 4 C -0.116 4.116 5 C -0.153 4.153 6 C 0.126 3.874 7 N -0.582 5.582 8 C 0.233 3.767 9 C -0.541 4.541 10 H 0.061 0.939 11 C 0.068 3.932 12 N -0.889 5.889 13 Si 0.892 3.108 14 H -0.275 1.275 15 H -0.285 1.285 16 H -0.275 1.275 17 C 0.544 3.456 18 O -0.568 6.568 19 C -0.139 4.139 20 C -0.036 4.036 21 C 0.074 3.926 22 N -0.458 5.458 23 C 0.032 3.968 24 C -0.301 4.301 25 S 0.189 5.811 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.052 0.948 36 H 0.046 0.954 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.045 0.955 40 H 0.036 0.964 41 H 0.266 0.734 42 H 0.143 0.857 43 H 0.152 0.848 44 H 0.170 0.830 45 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.622 3.910 -3.878 7.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.121 4.121 4 C -0.154 4.154 5 C -0.210 4.210 6 C 0.003 3.997 7 N -0.310 5.310 8 C 0.113 3.887 9 C -0.579 4.579 10 H 0.079 0.921 11 C -0.135 4.135 12 N -0.527 5.527 13 Si 0.720 3.280 14 H -0.201 1.201 15 H -0.211 1.211 16 H -0.200 1.200 17 C 0.334 3.666 18 O -0.451 6.451 19 C -0.166 4.166 20 C -0.059 4.059 21 C -0.197 4.197 22 N -0.172 5.172 23 C -0.125 4.125 24 C -0.442 4.442 25 S 0.447 5.553 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.063 0.937 40 H 0.054 0.946 41 H 0.076 0.924 42 H 0.161 0.839 43 H 0.170 0.830 44 H 0.187 0.813 45 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -4.816 3.910 -3.269 7.012 hybrid contribution 1.342 -0.146 -0.921 1.634 sum -3.474 3.764 -4.190 6.618 Atomic orbital electron populations 1.21809 0.96668 1.01007 1.01217 1.21639 0.95012 0.96458 1.02849 1.21581 0.96409 0.96151 0.97995 1.21549 1.00902 0.95518 0.97420 1.21814 1.02130 0.96236 1.00803 1.21431 0.93529 0.99063 0.85721 1.48100 1.63500 1.12879 1.06536 1.19588 0.95888 0.74565 0.98668 1.21485 0.92926 0.93136 1.50364 0.92054 1.24906 0.98308 0.95618 0.94714 1.69901 1.35790 0.98574 1.48438 0.86637 0.85153 0.77132 0.79109 1.20081 1.21100 1.19997 1.17948 0.78826 0.85346 0.84509 1.90734 1.50001 1.18051 1.86318 1.23505 0.99085 1.01393 0.92601 1.21289 0.97144 1.00539 0.86922 1.26321 1.03534 0.93482 0.96339 1.67031 1.16727 1.35158 0.98304 1.21646 1.00791 0.90815 0.99204 1.26622 1.12637 1.02526 1.02413 1.84502 1.54841 1.14453 1.01516 0.93211 0.93182 0.93006 0.90947 0.92084 0.90834 0.91985 0.92128 0.92280 0.92854 0.93443 0.90290 0.91033 0.93705 0.94586 0.92403 0.83909 0.83043 0.81283 0.80666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.68 37.16 0.36 -1.56 16 2 C -0.12 -1.84 4.70 -26.74 -0.13 -1.97 16 3 C -0.10 -1.56 2.02 -90.62 -0.18 -1.74 16 4 C -0.12 -1.48 5.28 -26.73 -0.14 -1.62 16 5 C -0.15 -1.90 9.77 37.16 0.36 -1.54 16 6 C 0.13 2.22 4.61 -4.04 -0.02 2.20 16 7 N -0.58 -11.62 2.13 -176.77 -0.38 -11.99 16 8 C 0.23 5.16 3.76 -5.19 -0.02 5.14 16 9 C -0.54 -13.34 9.34 -34.44 -0.32 -13.66 16 10 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 11 C 0.07 1.71 5.46 -17.82 -0.10 1.62 16 12 N -0.89 -23.27 13.29 55.43 0.74 -22.53 16 13 Si 0.89 19.89 29.54 -169.99 -5.02 14.87 16 14 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 15 H -0.29 -6.33 7.11 56.52 0.40 -5.92 16 16 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 17 C 0.54 11.04 7.54 -13.04 -0.10 10.95 16 18 O -0.57 -12.27 15.80 5.16 0.08 -12.19 16 19 C -0.14 -2.59 8.73 -37.44 -0.33 -2.92 16 20 C -0.04 -0.61 9.74 -37.37 -0.36 -0.98 16 21 C 0.07 1.20 7.41 -14.69 -0.11 1.10 16 22 N -0.46 -7.29 10.67 -11.69 -0.12 -7.42 16 23 C 0.03 0.42 11.24 -19.42 -0.22 0.20 16 24 C -0.30 -3.67 11.08 29.30 0.32 -3.34 16 25 S 0.19 2.76 22.05 -107.50 -2.37 0.39 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.60 6.44 -51.93 -0.33 0.26 16 29 H 0.07 1.25 5.96 -51.92 -0.31 0.94 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.07 1.25 7.98 -51.93 -0.41 0.84 16 32 H 0.06 0.73 6.30 -51.92 -0.33 0.40 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.79 6.37 -51.93 -0.33 0.46 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.08 1.39 8.03 -51.93 -0.42 0.98 16 38 H 0.07 1.28 5.93 -51.93 -0.31 0.97 16 39 H 0.05 1.04 6.63 -51.93 -0.34 0.69 16 40 H 0.04 0.83 6.31 -51.93 -0.33 0.50 16 41 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 42 H 0.14 2.75 5.40 -52.48 -0.28 2.47 16 43 H 0.15 2.58 7.52 -52.49 -0.39 2.19 16 44 H 0.17 1.67 8.06 -52.49 -0.42 1.24 16 45 H 0.18 1.59 8.06 -52.49 -0.42 1.16 16 LS Contribution 379.12 15.07 5.71 5.71 Total: -1.00 -27.42 379.12 -9.06 -36.48 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -6.72 Total: 4.80 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: -0.98 Total: -8.13 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: 0.23 Total: -41.94 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.08 Total: -12.19 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Atomic # 16 Polarization: 2.76 SS G_CDS: -2.37 Total: 0.39 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -27.42 -9.06 -36.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123521940.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.555 kcal (2) G-P(sol) polarization free energy of solvation -27.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds