Wall clock time and date at job start Tue Mar 31 2020 13:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47414 * 2 1 4 4 C 1.52999 * 109.47275 * 65.00222 * 3 2 1 5 5 C 1.52998 * 109.47275 * 186.03938 * 4 3 2 6 6 C 1.53002 * 109.47175 * 185.00107 * 3 2 1 7 7 N 1.46497 * 109.47189 * 63.25040 * 6 3 2 8 8 C 1.46499 * 119.99966 * 263.91714 * 7 6 3 9 9 C 1.50701 * 109.46927 * 269.99645 * 8 7 6 10 10 H 1.08004 * 119.99788 * 359.97438 * 9 8 7 11 11 C 1.37879 * 120.00201 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99801 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00043 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47156 * 60.00102 * 13 11 9 15 15 H 1.48504 * 109.47025 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47098 * 299.99883 * 13 11 9 17 17 C 1.34778 * 120.00150 * 83.91142 * 7 6 3 18 18 O 1.21727 * 120.00112 * 355.32181 * 17 7 6 19 19 C 1.46245 * 120.00278 * 175.31621 * 17 7 6 20 20 C 1.35236 * 120.00352 * 179.72480 * 19 17 7 21 21 C 1.46406 * 120.00447 * 179.97438 * 20 19 17 22 22 N 1.30830 * 125.55367 * 179.97438 * 21 20 19 23 23 C 1.30807 * 115.81228 * 180.02562 * 22 21 20 24 24 C 1.34170 * 115.80563 * 359.97438 * 23 22 21 25 25 S 1.71059 * 109.15658 * 359.73265 * 24 23 22 26 26 H 1.09001 * 109.47522 * 59.99840 * 1 2 3 27 27 H 1.09000 * 109.47810 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47254 * 300.00261 * 1 2 3 29 29 H 1.09008 * 109.46731 * 239.99827 * 2 1 3 30 30 H 1.08996 * 109.47083 * 120.00331 * 2 1 3 31 31 H 1.08998 * 109.47236 * 305.00274 * 3 2 1 32 32 H 1.09007 * 109.46733 * 306.03674 * 4 3 2 33 33 H 1.09003 * 109.47342 * 66.03425 * 4 3 2 34 34 H 1.08997 * 109.47240 * 303.69815 * 5 4 3 35 35 H 1.08998 * 109.47268 * 63.69972 * 5 4 3 36 36 H 1.09004 * 109.46959 * 183.69843 * 5 4 3 37 37 H 1.08996 * 109.47079 * 303.24910 * 6 3 2 38 38 H 1.09000 * 109.47179 * 183.24756 * 6 3 2 39 39 H 1.09001 * 109.47385 * 29.99520 * 8 7 6 40 40 H 1.08997 * 109.47412 * 149.99754 * 8 7 6 41 41 H 0.96993 * 120.00086 * 180.02562 * 12 11 9 42 42 H 1.08006 * 119.99866 * 0.02562 * 19 17 7 43 43 H 1.08002 * 120.00135 * 0.02562 * 20 19 17 44 44 H 1.08001 * 122.10006 * 180.02562 * 23 22 21 45 45 H 1.08000 * 125.41975 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.6354 2.1265 1.3074 5 6 2.0122 3.6080 1.2456 6 6 3.5649 1.4442 -0.1258 7 7 3.9494 0.8592 -1.4126 8 6 4.3166 -0.5568 -1.4931 9 6 5.7994 -0.7047 -1.2687 10 1 6.4076 0.1688 -1.0850 11 6 6.3798 -1.9550 -1.2980 12 7 5.6394 -3.0185 -1.5222 13 14 8.2177 -2.1384 -1.0192 14 1 8.5698 -1.6108 0.3236 15 1 8.5900 -3.5736 -1.1009 16 1 8.9546 -1.3764 -2.0592 17 6 3.9653 1.6236 -2.5226 18 8 3.5790 2.7769 -2.4729 19 6 4.4467 1.0675 -3.7866 20 6 4.4574 1.8328 -4.9016 21 6 4.9398 1.2764 -6.1669 22 7 4.9973 1.9162 -7.3066 23 6 5.4618 1.2329 -8.3206 24 6 5.8183 -0.0335 -8.0574 25 16 5.5446 -0.3609 -6.4009 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3635 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 1.6054 1.9815 -0.8418 32 1 0.5588 2.0310 1.4493 33 1 2.1550 1.6538 2.1408 34 1 3.0779 3.7036 1.0382 35 1 1.4429 4.0951 0.4540 36 1 1.7841 4.0810 2.2009 37 1 3.9969 0.8564 0.6841 38 1 3.9330 2.4685 -0.0678 39 1 3.7760 -1.1163 -0.7297 40 1 4.0579 -0.9438 -2.4787 41 1 6.0476 -3.8982 -1.5424 42 1 4.7891 0.0442 -3.8308 43 1 4.1108 2.8548 -4.8584 44 1 5.5535 1.6615 -9.3078 45 1 6.2183 -0.7334 -8.7760 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123521940.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:57 Heat of formation + Delta-G solvation = -8.787134 kcal Electronic energy + Delta-G solvation = -25129.089676 eV Core-core repulsion = 21658.659826 eV Total energy + Delta-G solvation = -3470.429850 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.02712 -40.52160 -38.32475 -36.24694 -34.94870 -34.36037 -32.61590 -30.96999 -29.90515 -28.64511 -26.96739 -25.39269 -24.98308 -23.48136 -22.96195 -21.03918 -20.84712 -19.79311 -18.79994 -18.56345 -17.98937 -17.24435 -16.61865 -16.32530 -16.05977 -15.61716 -15.54818 -15.22981 -14.99085 -14.84294 -14.43713 -14.31314 -14.25641 -14.05892 -13.71374 -13.46871 -13.12430 -12.85835 -12.82875 -12.64237 -12.62057 -12.36754 -12.22786 -12.11716 -12.01550 -11.73411 -11.56060 -11.42026 -11.30560 -11.20048 -10.89275 -10.85197 -10.54947 -10.51345 -9.53155 -9.24628 -8.16835 -6.30948 -0.95070 0.26045 0.59503 0.79040 1.43204 1.44914 1.51571 1.86849 2.23192 2.41250 2.46320 3.11007 3.13476 3.79720 3.93815 3.98530 4.07297 4.10123 4.22623 4.32994 4.41222 4.45222 4.49557 4.53582 4.64134 4.77269 4.81880 4.87299 4.89976 4.96738 5.01903 5.06977 5.12762 5.17836 5.21399 5.28589 5.29652 5.33600 5.46295 5.52099 5.58098 5.70530 5.89942 6.09146 6.55120 6.61043 6.82879 7.27493 7.42067 8.87856 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.008739 B = 0.004740 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3203.313463 B = 5906.147378 C = 8007.983229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.120 4.120 3 C -0.092 4.092 4 C -0.110 4.110 5 C -0.151 4.151 6 C 0.123 3.877 7 N -0.584 5.584 8 C 0.251 3.749 9 C -0.548 4.548 10 H 0.050 0.950 11 C 0.030 3.970 12 N -0.914 5.914 13 Si 0.945 3.055 14 H -0.274 1.274 15 H -0.280 1.280 16 H -0.273 1.273 17 C 0.542 3.458 18 O -0.588 6.588 19 C -0.167 4.167 20 C -0.005 4.005 21 C 0.037 3.963 22 N -0.467 5.467 23 C 0.017 3.983 24 C -0.270 4.270 25 S 0.178 5.822 26 H 0.046 0.954 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.043 0.957 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.044 0.956 35 H 0.046 0.954 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.034 0.966 40 H 0.025 0.975 41 H 0.268 0.732 42 H 0.134 0.866 43 H 0.149 0.851 44 H 0.205 0.795 45 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.332 3.835 -4.706 7.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.158 4.158 3 C -0.111 4.111 4 C -0.148 4.148 5 C -0.208 4.208 6 C 0.000 4.000 7 N -0.312 5.312 8 C 0.131 3.869 9 C -0.586 4.586 10 H 0.069 0.931 11 C -0.171 4.171 12 N -0.553 5.553 13 Si 0.770 3.230 14 H -0.199 1.199 15 H -0.205 1.205 16 H -0.198 1.198 17 C 0.332 3.668 18 O -0.472 6.472 19 C -0.193 4.193 20 C -0.028 4.028 21 C -0.232 4.232 22 N -0.182 5.182 23 C -0.138 4.138 24 C -0.410 4.410 25 S 0.434 5.566 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.085 0.915 39 H 0.052 0.948 40 H 0.043 0.957 41 H 0.077 0.923 42 H 0.152 0.848 43 H 0.167 0.833 44 H 0.222 0.778 45 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -4.535 3.850 -4.082 7.215 hybrid contribution 1.290 -0.119 -0.850 1.549 sum -3.245 3.731 -4.932 6.984 Atomic orbital electron populations 1.21759 0.94555 1.01774 1.01995 1.21584 0.96869 0.95856 1.01455 1.21472 0.94317 0.96428 0.98923 1.21530 1.02053 0.95374 0.95839 1.21792 1.01049 0.96158 1.01777 1.21571 0.95388 0.98421 0.84603 1.48073 1.63559 1.12082 1.07452 1.19218 0.94556 0.75634 0.97528 1.21644 0.93992 0.92851 1.50125 0.93129 1.25505 1.01692 0.95368 0.94534 1.69982 1.37164 0.98884 1.49220 0.85809 0.81040 0.77198 0.78911 1.19913 1.20536 1.19787 1.18192 0.78414 0.85123 0.85030 1.90704 1.51153 1.18667 1.86682 1.23211 1.02217 1.01356 0.92553 1.21281 0.94525 0.99914 0.87121 1.26118 1.06284 0.94606 0.96233 1.67030 1.16310 1.36089 0.98738 1.22200 1.00613 0.91169 0.99850 1.27086 1.09997 1.02664 1.01238 1.84634 1.54498 1.13654 1.03847 0.93509 0.92470 0.91085 0.93772 0.92036 0.92716 0.90200 0.91283 0.93713 0.93520 0.91209 0.90552 0.91480 0.94753 0.95658 0.92274 0.84793 0.83338 0.77828 0.76880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.55 9.68 71.98 0.70 -2.85 16 2 C -0.12 -3.67 4.70 30.59 0.14 -3.53 16 3 C -0.09 -2.85 2.02 -10.80 -0.02 -2.87 16 4 C -0.11 -2.68 5.28 30.59 0.16 -2.52 16 5 C -0.15 -3.63 9.77 71.98 0.70 -2.92 16 6 C 0.12 4.48 4.61 86.38 0.40 4.88 16 7 N -0.58 -24.41 2.13 -831.38 -1.77 -26.18 16 8 C 0.25 11.64 3.76 85.63 0.32 11.96 16 9 C -0.55 -27.69 9.34 25.60 0.24 -27.45 16 10 H 0.05 2.63 7.81 -2.91 -0.02 2.60 16 11 C 0.03 1.53 5.46 84.66 0.46 1.99 16 12 N -0.91 -48.35 13.29 21.45 0.28 -48.07 16 13 Si 0.94 40.74 29.54 68.60 2.03 42.76 16 14 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 15 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 16 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 17 C 0.54 23.03 7.54 86.32 0.65 23.68 16 18 O -0.59 -26.38 15.80 -4.43 -0.07 -26.45 16 19 C -0.17 -6.52 8.73 23.66 0.21 -6.31 16 20 C -0.01 -0.19 9.74 23.71 0.23 0.04 16 21 C 0.04 1.21 7.41 86.97 0.64 1.85 16 22 N -0.47 -14.25 10.67 -190.90 -2.04 -16.29 16 23 C 0.02 0.40 11.24 83.92 0.94 1.34 16 24 C -0.27 -5.70 11.08 66.89 0.74 -4.96 16 25 S 0.18 5.03 22.05 -56.49 -1.25 3.78 16 26 H 0.05 1.17 8.14 -2.39 -0.02 1.16 16 27 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.07 1.48 6.44 -2.39 -0.02 1.46 16 29 H 0.04 1.59 5.96 -2.38 -0.01 1.57 16 30 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.05 1.92 7.98 -2.39 -0.02 1.90 16 32 H 0.08 1.69 6.30 -2.38 -0.02 1.67 16 33 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.04 1.19 6.37 -2.39 -0.02 1.18 16 35 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 37 H 0.08 2.78 8.03 -2.39 -0.02 2.76 16 38 H 0.07 2.49 5.93 -2.39 -0.01 2.48 16 39 H 0.03 1.66 6.63 -2.39 -0.02 1.64 16 40 H 0.03 1.23 6.31 -2.39 -0.02 1.22 16 41 H 0.27 13.52 8.31 -92.71 -0.77 12.75 16 42 H 0.13 5.46 5.40 -2.91 -0.02 5.44 16 43 H 0.15 5.24 7.52 -2.91 -0.02 5.22 16 44 H 0.21 3.19 8.06 -2.91 -0.02 3.17 16 45 H 0.21 2.82 8.06 -2.91 -0.02 2.79 16 Total: -1.00 -59.51 379.12 4.69 -54.82 By element: Atomic # 1 Polarization: 22.31 SS G_CDS: 0.98 Total: 23.29 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: 6.52 Total: -7.68 kcal Atomic # 7 Polarization: -87.01 SS G_CDS: -3.53 Total: -90.54 kcal Atomic # 8 Polarization: -26.38 SS G_CDS: -0.07 Total: -26.45 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 2.03 Total: 42.76 kcal Atomic # 16 Polarization: 5.03 SS G_CDS: -1.25 Total: 3.78 kcal Total: -59.51 4.69 -54.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123521940.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.036 kcal (2) G-P(sol) polarization free energy of solvation -59.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds