Wall clock time and date at job start Tue Mar 31 2020 12:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47166 * 2 1 4 4 C 1.38260 * 119.99559 * 264.99427 * 3 2 1 5 5 C 1.38212 * 119.99650 * 179.71963 * 4 3 2 6 6 C 1.38255 * 120.00300 * 0.28729 * 5 4 3 7 7 C 1.38216 * 119.99744 * 359.97134 * 6 5 4 8 8 C 1.38208 * 120.00333 * 85.19279 * 3 2 1 9 9 C 1.50698 * 120.00186 * 0.03695 * 8 3 2 10 10 N 1.46897 * 109.46930 * 80.17218 * 9 8 3 11 11 C 1.46908 * 111.00271 * 180.02562 * 10 9 8 12 12 C 1.52995 * 109.47551 * 180.02562 * 11 10 9 13 13 N 1.46495 * 109.47367 * 180.02562 * 12 11 10 14 14 C 1.34771 * 120.00195 * 179.97438 * 13 12 11 15 15 O 1.21287 * 120.00067 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00374 * 179.97438 * 14 13 12 17 17 S 1.80997 * 109.47444 * 180.02562 * 16 14 13 18 18 C 1.76205 * 100.00160 * 180.02562 * 17 16 14 19 19 H 1.08000 * 119.99414 * 0.02562 * 18 17 16 20 20 C 1.38793 * 120.00192 * 179.97438 * 18 17 16 21 21 N 1.31627 * 120.00238 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99922 * 0.02562 * 20 18 17 23 23 H 1.48505 * 109.47030 * 89.99593 * 22 20 18 24 24 H 1.48498 * 109.47104 * 209.99649 * 22 20 18 25 25 H 1.48501 * 109.47269 * 330.00011 * 22 20 18 26 26 H 1.09000 * 109.47225 * 60.00352 * 1 2 3 27 27 H 1.09003 * 109.47047 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47000 * 300.00106 * 1 2 3 29 29 H 1.09005 * 109.47450 * 239.99707 * 2 1 3 30 30 H 1.09000 * 109.47225 * 119.99648 * 2 1 3 31 31 H 1.08002 * 120.00476 * 0.02562 * 4 3 2 32 32 H 1.07999 * 119.99941 * 180.25946 * 5 4 3 33 33 H 1.08005 * 120.00230 * 179.97438 * 6 5 4 34 34 H 1.08002 * 119.99715 * 179.97438 * 7 6 5 35 35 H 1.09001 * 109.47640 * 200.17138 * 9 8 3 36 36 H 1.09000 * 109.47091 * 320.17597 * 9 8 3 37 37 H 1.00897 * 111.00432 * 303.95277 * 10 9 8 38 38 H 1.08997 * 109.46519 * 300.00264 * 11 10 9 39 39 H 1.09003 * 109.47086 * 59.99731 * 11 10 9 40 40 H 1.09005 * 109.46981 * 300.00180 * 12 11 10 41 41 H 1.09003 * 109.47246 * 59.99706 * 12 11 10 42 42 H 0.97005 * 119.99890 * 359.97438 * 13 12 11 43 43 H 1.09005 * 109.47383 * 300.00389 * 16 14 13 44 44 H 1.09003 * 109.46833 * 59.99908 * 16 14 13 45 45 H 0.96998 * 120.00490 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3612 2.0376 -1.1929 5 6 2.8164 3.3426 -1.1934 6 6 2.9485 4.0292 -0.0007 7 6 2.6248 3.4108 1.1922 8 6 2.1681 2.1058 1.1927 9 6 1.8147 1.4317 2.4933 10 7 2.9234 0.5638 2.9120 11 6 2.6134 -0.1121 4.1791 12 6 3.7890 -1.0044 4.5821 13 7 3.4796 -1.6787 5.8453 14 6 4.3754 -2.5214 6.3964 15 8 5.4377 -2.7218 5.8464 16 6 4.0575 -3.2147 7.6961 17 16 5.4482 -4.2704 8.1729 18 6 4.8231 -4.9383 9.6789 19 1 3.8432 -4.6518 10.0309 20 6 5.5897 -5.8334 10.4121 21 7 5.1230 -6.3319 11.5374 22 14 7.2844 -6.3294 9.8027 23 1 8.3004 -5.3946 10.3499 24 1 7.5883 -7.7108 10.2549 25 1 7.3119 -6.2769 8.3189 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.2578 1.5015 -2.1247 32 1 3.0694 3.8259 -2.1255 33 1 3.3047 5.0489 -0.0011 34 1 2.7284 3.9470 2.1240 35 1 1.6365 2.1879 3.2579 36 1 0.9145 0.8319 2.3588 37 1 3.1506 -0.1054 2.1919 38 1 2.4405 0.6332 4.9554 39 1 1.7188 -0.7226 4.0559 40 1 3.9623 -1.7496 3.8058 41 1 4.6833 -0.3935 4.7055 42 1 2.6299 -1.5187 6.2851 43 1 3.8846 -2.4695 8.4727 44 1 3.1629 -3.8252 7.5729 45 1 5.6589 -6.9572 12.0500 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123787284.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:41 Heat of formation + Delta-G solvation = -25.992283 kcal Electronic energy + Delta-G solvation = -23149.169838 eV Core-core repulsion = 19677.993916 eV Total energy + Delta-G solvation = -3471.175922 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.17949 -39.28574 -36.92916 -34.83043 -34.15400 -32.43809 -31.96028 -30.13252 -29.70185 -27.83338 -25.63641 -25.22441 -24.02451 -22.39841 -22.15508 -20.83743 -20.46296 -17.90208 -17.01185 -16.72393 -16.42124 -16.10081 -15.80095 -15.62223 -15.02987 -14.94024 -14.68299 -14.27746 -14.20989 -13.87564 -13.73388 -13.56539 -13.38420 -13.10750 -12.80326 -12.72195 -12.45531 -12.26538 -12.22374 -11.88510 -11.63499 -11.55271 -11.26337 -11.14271 -11.06323 -11.00256 -10.60478 -9.85720 -9.55407 -9.21069 -9.05003 -9.02254 -8.96676 -8.79502 -8.49743 -6.91567 -6.28721 -4.00500 0.95108 1.04644 2.73455 2.97919 3.18273 3.33644 3.40124 3.51253 3.62668 4.10629 4.30432 4.33659 4.36614 4.47083 4.55556 4.65554 4.75435 4.76723 4.79952 4.89185 4.94090 5.04952 5.10384 5.13224 5.17902 5.20414 5.26109 5.31710 5.46895 5.49610 5.63620 5.69054 5.71877 5.78166 5.79735 5.83467 6.01007 6.13619 6.16216 6.28362 6.43640 6.55002 6.66329 6.91062 7.59170 7.94282 8.41637 8.48858 9.17511 10.80457 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.030683 B = 0.001738 C = 0.001721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.332705 B =16111.078487 C =16261.459423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 C -0.075 4.075 4 C -0.119 4.119 5 C -0.117 4.117 6 C -0.126 4.126 7 C -0.097 4.097 8 C -0.080 4.080 9 C 0.097 3.903 10 N -0.680 5.680 11 C 0.048 3.952 12 C 0.123 3.877 13 N -0.737 5.737 14 C 0.531 3.469 15 O -0.518 6.518 16 C -0.124 4.124 17 S -0.142 6.142 18 C -0.522 4.522 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.123 0.877 35 H 0.081 0.919 36 H 0.045 0.955 37 H 0.344 0.656 38 H 0.081 0.919 39 H 0.038 0.962 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.399 0.601 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.542 19.684 -25.144 33.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.126 4.126 3 C -0.076 4.076 4 C -0.137 4.137 5 C -0.136 4.136 6 C -0.144 4.144 7 C -0.116 4.116 8 C -0.080 4.080 9 C -0.032 4.032 10 N -0.313 5.313 11 C -0.081 4.081 12 C -0.002 4.002 13 N -0.392 5.392 14 C 0.317 3.683 15 O -0.392 6.392 16 C -0.275 4.275 17 S 0.085 5.915 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.517 5.517 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.138 0.862 32 H 0.138 0.862 33 H 0.139 0.861 34 H 0.141 0.859 35 H 0.100 0.900 36 H 0.063 0.937 37 H 0.164 0.836 38 H 0.099 0.901 39 H 0.056 0.944 40 H 0.082 0.918 41 H 0.094 0.906 42 H 0.233 0.767 43 H 0.115 0.885 44 H 0.115 0.885 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.389 19.725 -25.594 33.649 hybrid contribution -1.578 -0.585 0.550 1.770 sum -10.966 19.140 -25.044 33.373 Atomic orbital electron populations 1.21766 0.94536 1.01966 1.02242 1.20606 0.96390 0.92758 1.02888 1.19766 0.98921 0.96037 0.92828 1.21008 1.00059 0.95238 0.97390 1.21144 0.99546 0.94735 0.98136 1.21146 1.00586 1.00050 0.92584 1.21044 0.97949 0.94406 0.98187 1.19582 1.00224 0.94443 0.93783 1.20912 0.92075 0.96245 0.93933 1.60416 1.39890 1.25490 1.05456 1.22125 0.96420 0.96789 0.92809 1.21142 0.97904 0.95087 0.86032 1.45851 1.20916 1.47499 1.24918 1.20267 0.83651 0.78358 0.86052 1.90710 1.23753 1.61950 1.62815 1.23276 1.05132 1.02518 0.96524 1.84804 1.22405 1.54187 1.30146 1.22319 1.07123 1.31353 1.06134 0.89387 1.24711 0.98312 0.94385 0.93902 1.69936 1.38027 1.30030 1.13700 0.86733 0.84167 0.78729 0.82217 1.19186 1.19945 1.15917 0.92406 0.92183 0.92509 0.90720 0.91360 0.86179 0.86181 0.86097 0.85924 0.90035 0.93699 0.83629 0.90081 0.94413 0.91806 0.90569 0.76732 0.88454 0.88466 0.91945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.75 37.16 0.36 -0.45 16 2 C -0.09 -0.54 5.39 -27.89 -0.15 -0.69 16 3 C -0.07 -0.55 5.13 -104.63 -0.54 -1.09 16 4 C -0.12 -0.84 9.68 -39.58 -0.38 -1.23 16 5 C -0.12 -0.81 10.05 -39.58 -0.40 -1.20 16 6 C -0.13 -0.89 10.05 -39.58 -0.40 -1.29 16 7 C -0.10 -0.75 9.67 -39.58 -0.38 -1.13 16 8 C -0.08 -0.62 5.39 -104.63 -0.56 -1.18 16 9 C 0.10 0.68 5.07 -4.98 -0.03 0.65 16 10 N -0.68 -5.45 6.48 -115.06 -0.75 -6.20 16 11 C 0.05 0.38 5.80 -3.82 -0.02 0.36 16 12 C 0.12 1.36 5.93 -4.05 -0.02 1.34 16 13 N -0.74 -9.16 5.56 -60.30 -0.33 -9.50 16 14 C 0.53 9.42 7.85 -10.99 -0.09 9.34 16 15 O -0.52 -11.31 15.86 5.55 0.09 -11.22 16 16 C -0.12 -2.38 6.16 36.00 0.22 -2.16 16 17 S -0.14 -3.61 18.55 -107.50 -1.99 -5.60 16 18 C -0.52 -15.06 10.04 30.94 0.31 -14.74 16 19 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 20 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 21 N -0.88 -26.58 13.97 55.49 0.78 -25.80 16 22 Si 0.86 21.86 27.74 -169.99 -4.71 17.14 16 23 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 25 H -0.24 -6.00 6.74 56.52 0.38 -5.62 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.32 6.74 -51.93 -0.35 -0.03 16 29 H 0.07 0.41 8.05 -51.93 -0.42 -0.01 16 30 H 0.07 0.42 5.44 -51.93 -0.28 0.14 16 31 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 32 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 33 H 0.12 0.64 8.06 -52.48 -0.42 0.22 16 34 H 0.12 0.81 8.04 -52.49 -0.42 0.38 16 35 H 0.08 0.54 8.00 -51.93 -0.42 0.13 16 36 H 0.05 0.29 5.86 -51.93 -0.30 -0.02 16 37 H 0.34 2.72 6.91 -39.29 -0.27 2.45 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.40 3.72 8.47 -40.82 -0.35 3.37 16 43 H 0.10 1.73 8.14 -51.91 -0.42 1.31 16 44 H 0.10 1.73 8.14 -51.92 -0.42 1.30 16 45 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 383.72 15.07 5.78 5.78 Total: -1.00 -34.31 383.72 -10.35 -44.66 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -7.04 Total: 1.52 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: -2.17 Total: -10.78 kcal Atomic # 7 Polarization: -41.19 SS G_CDS: -0.31 Total: -41.50 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.09 Total: -11.22 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.71 Total: 17.14 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -1.99 Total: -5.60 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.31 -10.35 -44.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123787284.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.669 kcal (2) G-P(sol) polarization free energy of solvation -34.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds