Wall clock time and date at job start Tue Mar 31 2020 12:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47166 * 2 1 4 4 C 1.38260 * 119.99559 * 264.99427 * 3 2 1 5 5 C 1.38212 * 119.99650 * 179.71963 * 4 3 2 6 6 C 1.38255 * 120.00300 * 0.28729 * 5 4 3 7 7 C 1.38216 * 119.99744 * 359.97134 * 6 5 4 8 8 C 1.38208 * 120.00333 * 85.19279 * 3 2 1 9 9 C 1.50698 * 120.00186 * 0.03695 * 8 3 2 10 10 N 1.46897 * 109.46930 * 80.17218 * 9 8 3 11 11 C 1.46908 * 111.00271 * 180.02562 * 10 9 8 12 12 C 1.52995 * 109.47551 * 180.02562 * 11 10 9 13 13 N 1.46495 * 109.47367 * 180.02562 * 12 11 10 14 14 C 1.34771 * 120.00195 * 179.97438 * 13 12 11 15 15 O 1.21287 * 120.00067 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00374 * 179.97438 * 14 13 12 17 17 S 1.80997 * 109.47444 * 180.02562 * 16 14 13 18 18 C 1.76205 * 100.00160 * 180.02562 * 17 16 14 19 19 H 1.08000 * 119.99414 * 0.02562 * 18 17 16 20 20 C 1.38793 * 120.00192 * 179.97438 * 18 17 16 21 21 N 1.31627 * 120.00238 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99922 * 0.02562 * 20 18 17 23 23 H 1.48505 * 109.47030 * 89.99593 * 22 20 18 24 24 H 1.48498 * 109.47104 * 209.99649 * 22 20 18 25 25 H 1.48501 * 109.47269 * 330.00011 * 22 20 18 26 26 H 1.09000 * 109.47225 * 60.00352 * 1 2 3 27 27 H 1.09003 * 109.47047 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47000 * 300.00106 * 1 2 3 29 29 H 1.09005 * 109.47450 * 239.99707 * 2 1 3 30 30 H 1.09000 * 109.47225 * 119.99648 * 2 1 3 31 31 H 1.08002 * 120.00476 * 0.02562 * 4 3 2 32 32 H 1.07999 * 119.99941 * 180.25946 * 5 4 3 33 33 H 1.08005 * 120.00230 * 179.97438 * 6 5 4 34 34 H 1.08002 * 119.99715 * 179.97438 * 7 6 5 35 35 H 1.09001 * 109.47640 * 200.17138 * 9 8 3 36 36 H 1.09000 * 109.47091 * 320.17597 * 9 8 3 37 37 H 1.00897 * 111.00432 * 303.95277 * 10 9 8 38 38 H 1.08997 * 109.46519 * 300.00264 * 11 10 9 39 39 H 1.09003 * 109.47086 * 59.99731 * 11 10 9 40 40 H 1.09005 * 109.46981 * 300.00180 * 12 11 10 41 41 H 1.09003 * 109.47246 * 59.99706 * 12 11 10 42 42 H 0.97005 * 119.99890 * 359.97438 * 13 12 11 43 43 H 1.09005 * 109.47383 * 300.00389 * 16 14 13 44 44 H 1.09003 * 109.46833 * 59.99908 * 16 14 13 45 45 H 0.96998 * 120.00490 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3612 2.0376 -1.1929 5 6 2.8164 3.3426 -1.1934 6 6 2.9485 4.0292 -0.0007 7 6 2.6248 3.4108 1.1922 8 6 2.1681 2.1058 1.1927 9 6 1.8147 1.4317 2.4933 10 7 2.9234 0.5638 2.9120 11 6 2.6134 -0.1121 4.1791 12 6 3.7890 -1.0044 4.5821 13 7 3.4796 -1.6787 5.8453 14 6 4.3754 -2.5214 6.3964 15 8 5.4377 -2.7218 5.8464 16 6 4.0575 -3.2147 7.6961 17 16 5.4482 -4.2704 8.1729 18 6 4.8231 -4.9383 9.6789 19 1 3.8432 -4.6518 10.0309 20 6 5.5897 -5.8334 10.4121 21 7 5.1230 -6.3319 11.5374 22 14 7.2844 -6.3294 9.8027 23 1 8.3004 -5.3946 10.3499 24 1 7.5883 -7.7108 10.2549 25 1 7.3119 -6.2769 8.3189 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.2578 1.5015 -2.1247 32 1 3.0694 3.8259 -2.1255 33 1 3.3047 5.0489 -0.0011 34 1 2.7284 3.9470 2.1240 35 1 1.6365 2.1879 3.2579 36 1 0.9145 0.8319 2.3588 37 1 3.1506 -0.1054 2.1919 38 1 2.4405 0.6332 4.9554 39 1 1.7188 -0.7226 4.0559 40 1 3.9623 -1.7496 3.8058 41 1 4.6833 -0.3935 4.7055 42 1 2.6299 -1.5187 6.2851 43 1 3.8846 -2.4695 8.4727 44 1 3.1629 -3.8252 7.5729 45 1 5.6589 -6.9572 12.0500 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123787284.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:40 Heat of formation + Delta-G solvation = -48.989550 kcal Electronic energy + Delta-G solvation = -23150.167074 eV Core-core repulsion = 19677.993916 eV Total energy + Delta-G solvation = -3472.173158 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.76612 -40.56535 -37.67397 -35.70542 -34.83352 -34.66707 -32.69397 -31.27680 -30.30277 -28.77308 -27.83102 -25.88232 -24.54818 -23.14869 -22.68532 -21.82748 -21.32652 -19.89368 -17.96128 -17.61087 -17.32201 -17.16814 -16.99019 -16.73477 -16.27566 -15.96664 -15.78501 -15.26517 -15.00210 -14.89051 -14.70149 -14.63169 -14.31791 -14.20623 -13.82797 -13.61048 -13.35347 -13.26311 -13.01430 -12.92073 -12.77069 -12.67011 -12.55396 -12.38487 -12.13283 -11.86457 -11.62450 -11.55109 -11.16841 -11.05311 -10.53067 -10.16639 -9.75142 -9.57562 -9.35828 -8.99432 -8.51242 -6.22086 0.42688 0.51974 0.99085 1.31831 1.47079 1.55559 1.56026 2.15996 2.25728 2.70178 2.83079 2.87032 3.42668 3.77938 3.82140 3.88161 3.95012 4.02993 4.10646 4.14273 4.24945 4.31252 4.38193 4.47266 4.47683 4.48827 4.57649 4.65095 4.72957 4.77687 4.90532 4.93041 5.03747 5.04648 5.16816 5.22609 5.35853 5.36939 5.62773 5.65116 5.71070 5.76133 5.91180 6.11777 6.16033 6.30639 6.45881 6.94072 7.18856 8.61006 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.030683 B = 0.001738 C = 0.001721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.332705 B =16111.078487 C =16261.459423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.088 4.088 3 C -0.084 4.084 4 C -0.131 4.131 5 C -0.125 4.125 6 C -0.136 4.136 7 C -0.112 4.112 8 C -0.093 4.093 9 C 0.102 3.898 10 N -0.689 5.689 11 C 0.060 3.940 12 C 0.125 3.875 13 N -0.710 5.710 14 C 0.535 3.465 15 O -0.564 6.564 16 C -0.111 4.111 17 S -0.178 6.178 18 C -0.529 4.529 19 H 0.063 0.937 20 C 0.046 3.954 21 N -0.916 5.916 22 Si 0.914 3.086 23 H -0.263 1.263 24 H -0.259 1.259 25 H -0.237 1.237 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.054 0.946 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.133 0.867 32 H 0.137 0.863 33 H 0.135 0.865 34 H 0.129 0.871 35 H 0.085 0.915 36 H 0.053 0.947 37 H 0.344 0.656 38 H 0.090 0.910 39 H 0.054 0.946 40 H 0.057 0.943 41 H 0.059 0.941 42 H 0.418 0.582 43 H 0.115 0.885 44 H 0.116 0.884 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.217 20.576 -26.471 35.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.125 4.125 3 C -0.084 4.084 4 C -0.149 4.149 5 C -0.143 4.143 6 C -0.154 4.154 7 C -0.131 4.131 8 C -0.093 4.093 9 C -0.026 4.026 10 N -0.322 5.322 11 C -0.069 4.069 12 C 0.001 3.999 13 N -0.364 5.364 14 C 0.320 3.680 15 O -0.442 6.442 16 C -0.261 4.261 17 S 0.048 5.952 18 C -0.676 4.676 19 H 0.082 0.918 20 C -0.160 4.160 21 N -0.554 5.554 22 Si 0.736 3.264 23 H -0.187 1.187 24 H -0.183 1.183 25 H -0.161 1.161 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.151 0.849 32 H 0.155 0.845 33 H 0.153 0.847 34 H 0.147 0.853 35 H 0.103 0.897 36 H 0.071 0.929 37 H 0.163 0.837 38 H 0.109 0.891 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.255 0.745 43 H 0.133 0.867 44 H 0.134 0.866 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.123 20.648 -26.922 35.407 hybrid contribution -1.493 -0.732 0.889 1.886 sum -11.616 19.916 -26.033 34.775 Atomic orbital electron populations 1.21742 0.94071 1.02300 1.02103 1.20616 0.96736 0.92090 1.03077 1.19964 0.98903 0.96640 0.92898 1.21272 1.00037 0.95605 0.97956 1.21427 0.99204 0.94844 0.98870 1.21404 1.00541 1.00875 0.92575 1.21256 0.98291 0.94729 0.98786 1.19735 1.00636 0.94678 0.94251 1.20888 0.91881 0.96137 0.93738 1.60398 1.40668 1.25669 1.05511 1.21998 0.95243 0.96612 0.93059 1.21196 0.98875 0.95002 0.84813 1.45577 1.20537 1.45374 1.24938 1.19968 0.83711 0.78882 0.85424 1.90701 1.25804 1.63859 1.63866 1.23266 1.02749 1.02123 0.98007 1.84751 1.26131 1.55925 1.28373 1.22462 1.06233 1.31378 1.07554 0.91836 1.25552 1.01823 0.94496 0.94096 1.70011 1.39647 1.30918 1.14845 0.85874 0.79894 0.79120 0.81531 1.18741 1.18324 1.16115 0.92464 0.91578 0.92731 0.90278 0.91415 0.84932 0.84515 0.84674 0.85339 0.89661 0.92906 0.83653 0.89121 0.92744 0.92427 0.92224 0.74458 0.86688 0.86598 0.91376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.75 71.98 0.70 -0.67 16 2 C -0.09 -0.95 5.39 29.85 0.16 -0.79 16 3 C -0.08 -1.14 5.13 -19.87 -0.10 -1.24 16 4 C -0.13 -1.71 9.68 22.27 0.22 -1.50 16 5 C -0.13 -1.58 10.05 22.27 0.22 -1.36 16 6 C -0.14 -1.80 10.05 22.27 0.22 -1.57 16 7 C -0.11 -1.62 9.67 22.27 0.22 -1.41 16 8 C -0.09 -1.33 5.39 -19.87 -0.11 -1.44 16 9 C 0.10 1.25 5.07 85.56 0.43 1.68 16 10 N -0.69 -9.82 6.48 -517.93 -3.35 -13.18 16 11 C 0.06 0.79 5.80 86.30 0.50 1.29 16 12 C 0.13 2.54 5.93 86.38 0.51 3.05 16 13 N -0.71 -15.91 5.56 -463.07 -2.57 -18.48 16 14 C 0.53 18.12 7.85 87.66 0.69 18.81 16 15 O -0.56 -24.28 15.86 -3.05 -0.05 -24.33 16 16 C -0.11 -4.08 6.16 71.24 0.44 -3.64 16 17 S -0.18 -9.01 18.55 -56.49 -1.05 -10.05 16 18 C -0.53 -30.70 10.04 67.95 0.68 -30.02 16 19 H 0.06 3.87 8.03 -2.91 -0.02 3.85 16 20 C 0.05 2.69 5.50 84.86 0.47 3.15 16 21 N -0.92 -55.69 13.97 21.65 0.30 -55.39 16 22 Si 0.91 45.09 27.74 68.60 1.90 46.99 16 23 H -0.26 -12.67 7.11 99.48 0.71 -11.96 16 24 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 25 H -0.24 -11.70 6.74 99.48 0.67 -11.03 16 26 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.05 0.54 6.74 -2.39 -0.02 0.52 16 29 H 0.08 0.77 8.05 -2.38 -0.02 0.75 16 30 H 0.07 0.73 5.44 -2.39 -0.01 0.72 16 31 H 0.13 1.29 8.06 -2.91 -0.02 1.27 16 32 H 0.14 1.15 8.06 -2.91 -0.02 1.13 16 33 H 0.14 1.27 8.06 -2.91 -0.02 1.25 16 34 H 0.13 1.58 8.04 -2.91 -0.02 1.56 16 35 H 0.08 0.97 8.00 -2.39 -0.02 0.95 16 36 H 0.05 0.56 5.86 -2.39 -0.01 0.55 16 37 H 0.34 4.93 6.91 -89.70 -0.62 4.31 16 38 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 41 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.42 6.35 8.47 -92.70 -0.79 5.57 16 43 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 44 H 0.12 3.87 8.14 -2.39 -0.02 3.85 16 45 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -74.11 383.72 -0.01 -74.12 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -0.45 Total: 15.96 kcal Atomic # 6 Polarization: -20.90 SS G_CDS: 5.25 Total: -15.65 kcal Atomic # 7 Polarization: -81.42 SS G_CDS: -5.62 Total: -87.05 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -0.05 Total: -24.33 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.90 Total: 46.99 kcal Atomic # 16 Polarization: -9.01 SS G_CDS: -1.05 Total: -10.05 kcal Total: -74.11 -0.01 -74.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123787284.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.130 kcal (2) G-P(sol) polarization free energy of solvation -74.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds