Wall clock time and date at job start Tue Mar 31 2020 12:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.47008 * 2 1 4 4 C 1.38253 * 119.99890 * 270.01705 * 3 2 1 5 5 C 1.38212 * 119.99859 * 179.97438 * 4 3 2 6 6 C 1.38255 * 120.00284 * 0.02562 * 5 4 3 7 7 C 1.38217 * 119.99740 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99801 * 179.97438 * 7 6 5 9 9 N 1.46898 * 109.46881 * 269.94972 * 8 7 6 10 10 C 1.46899 * 110.99851 * 179.97438 * 9 8 7 11 11 C 1.53008 * 109.46905 * 179.97438 * 10 9 8 12 12 N 1.46499 * 109.46625 * 180.02562 * 11 10 9 13 13 C 1.34784 * 119.99806 * 180.02562 * 12 11 10 14 14 O 1.21285 * 119.99576 * 359.97438 * 13 12 11 15 15 C 1.50692 * 120.00002 * 180.02562 * 13 12 11 16 16 S 1.81007 * 109.47163 * 179.97438 * 15 13 12 17 17 C 1.76197 * 100.00166 * 179.97438 * 16 15 13 18 18 H 1.08003 * 119.99676 * 359.97438 * 17 16 15 19 19 C 1.38792 * 120.00064 * 180.02562 * 17 16 15 20 20 N 1.31633 * 120.00249 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00285 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46892 * 89.99980 * 21 19 17 23 23 H 1.48497 * 109.47308 * 209.99885 * 21 19 17 24 24 H 1.48504 * 109.47145 * 330.00351 * 21 19 17 25 25 C 1.38215 * 119.99815 * 89.99868 * 3 2 1 26 26 H 1.09000 * 109.47148 * 60.00017 * 1 2 3 27 27 H 1.09005 * 109.47028 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47213 * 299.99878 * 1 2 3 29 29 H 1.08990 * 109.47328 * 239.99584 * 2 1 3 30 30 H 1.09006 * 109.47142 * 119.99509 * 2 1 3 31 31 H 1.08002 * 120.00364 * 0.02562 * 4 3 2 32 32 H 1.08000 * 119.99961 * 180.02562 * 5 4 3 33 33 H 1.07997 * 120.00435 * 180.02562 * 6 5 4 34 34 H 1.08994 * 109.46953 * 29.94909 * 8 7 6 35 35 H 1.08996 * 109.46834 * 149.95334 * 8 7 6 36 36 H 1.00903 * 111.00217 * 56.04860 * 9 8 7 37 37 H 1.08993 * 109.47361 * 299.99766 * 10 9 8 38 38 H 1.08997 * 109.47196 * 60.00602 * 10 9 8 39 39 H 1.08993 * 109.46995 * 300.00082 * 11 10 9 40 40 H 1.08997 * 109.46626 * 60.00346 * 11 10 9 41 41 H 0.96998 * 120.00729 * 0.02562 * 12 11 10 42 42 H 1.09002 * 109.47471 * 299.99556 * 15 13 12 43 43 H 1.09002 * 109.47453 * 59.99467 * 15 13 12 44 44 H 0.96996 * 120.00358 * 180.02562 * 20 19 17 45 45 H 1.07995 * 120.00164 * 359.72517 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2624 2.0727 -1.1973 5 6 2.7225 3.3759 -1.1973 6 6 2.9533 4.0276 0.0000 7 6 2.7243 3.3756 1.1970 8 6 2.9764 4.0857 2.5021 9 7 4.3639 3.8543 2.9254 10 6 4.6467 4.5337 4.1967 11 6 6.0976 4.2695 4.6044 12 7 6.3794 4.9466 5.8727 13 6 7.6038 4.8540 6.4285 14 8 8.4720 4.2098 5.8789 15 6 7.8935 5.5499 7.7333 16 16 9.6099 5.2376 8.2156 17 6 9.6724 6.1413 9.7269 18 1 8.7968 6.6670 10.0782 19 6 10.8470 6.1783 10.4653 20 7 11.9146 5.5387 10.0363 21 14 10.9135 7.1369 12.0672 22 1 10.5268 6.2482 13.1923 23 1 12.2933 7.6404 12.2859 24 1 9.9733 8.2842 11.9969 25 6 2.2626 2.0724 1.1970 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8898 30 1 1.8933 -0.5138 0.8901 31 1 2.0817 1.5638 -2.1327 32 1 2.9019 3.8853 -2.1326 33 1 3.3125 5.0461 0.0000 34 1 2.8097 5.1549 2.3720 35 1 2.2959 3.7017 3.2620 36 1 5.0134 4.1431 2.2092 37 1 4.4918 5.6060 4.0780 38 1 3.9778 4.1532 4.9687 39 1 6.2521 3.1971 4.7233 40 1 6.7668 4.6497 3.8326 41 1 5.6849 5.4615 6.3124 42 1 7.7383 6.6224 7.6154 43 1 7.2245 5.1687 8.5048 44 1 12.7354 5.5643 10.5525 45 1 2.0784 1.5648 2.1323 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123787659.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:45 Heat of formation + Delta-G solvation = -30.141832 kcal Electronic energy + Delta-G solvation = -22552.271123 eV Core-core repulsion = 19080.915263 eV Total energy + Delta-G solvation = -3471.355860 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.94453 -39.16801 -36.98966 -34.86823 -33.99286 -32.42256 -31.86780 -30.05245 -29.63674 -27.75120 -25.50917 -24.92607 -24.28395 -22.37487 -22.20998 -20.57571 -20.32751 -17.86044 -17.03013 -16.54417 -16.27135 -16.05561 -15.74166 -15.48747 -14.93730 -14.81444 -14.76942 -14.27417 -14.18779 -13.92549 -13.78417 -13.41047 -13.29870 -13.07183 -12.72033 -12.52546 -12.43814 -12.17162 -12.13233 -11.78223 -11.58583 -11.44805 -11.13418 -11.12280 -11.05805 -11.01776 -10.75737 -9.81149 -9.42611 -9.16117 -9.06473 -9.04271 -8.88332 -8.78372 -8.22674 -6.49237 -6.20922 -3.91561 0.97271 1.07203 2.97280 3.11323 3.22819 3.25604 3.30235 3.38648 3.66532 4.17532 4.21037 4.29621 4.38385 4.53707 4.66003 4.76663 4.77327 4.85445 4.93307 4.95439 5.08272 5.14178 5.15283 5.18288 5.22646 5.24453 5.28927 5.49493 5.51066 5.62164 5.69102 5.75542 5.77445 5.81514 5.90096 5.92393 6.12459 6.14355 6.23117 6.30201 6.49748 6.62955 6.68941 6.95353 7.60084 7.70400 8.35807 8.62334 9.24293 10.86511 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.035909 B = 0.001496 C = 0.001488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.567712 B =18712.167295 C =18809.683795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.087 4.087 3 C -0.083 4.083 4 C -0.118 4.118 5 C -0.118 4.118 6 C -0.119 4.119 7 C -0.081 4.081 8 C 0.100 3.900 9 N -0.680 5.680 10 C 0.049 3.951 11 C 0.123 3.877 12 N -0.739 5.739 13 C 0.532 3.468 14 O -0.516 6.516 15 C -0.153 4.153 16 S -0.060 6.060 17 C -0.536 4.536 18 H 0.073 0.927 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C -0.094 4.094 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.118 0.882 34 H 0.040 0.960 35 H 0.082 0.918 36 H 0.346 0.654 37 H 0.037 0.963 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.397 0.603 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.268 0.732 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.488 -4.903 -21.290 33.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.124 4.124 3 C -0.083 4.083 4 C -0.137 4.137 5 C -0.136 4.136 6 C -0.137 4.137 7 C -0.081 4.081 8 C -0.029 4.029 9 N -0.312 5.312 10 C -0.080 4.080 11 C -0.002 4.002 12 N -0.394 5.394 13 C 0.318 3.682 14 O -0.390 6.390 15 C -0.304 4.304 16 S 0.166 5.834 17 C -0.684 4.684 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.203 1.203 23 H -0.207 1.207 24 H -0.197 1.197 25 C -0.112 4.112 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.137 0.863 32 H 0.139 0.861 33 H 0.136 0.864 34 H 0.058 0.942 35 H 0.100 0.900 36 H 0.164 0.836 37 H 0.055 0.945 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.082 0.918 41 H 0.231 0.769 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.078 0.922 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -23.976 -6.632 -21.874 33.126 hybrid contribution -1.220 2.594 1.517 3.243 sum -25.196 -4.038 -20.357 32.643 Atomic orbital electron populations 1.21746 0.94714 1.01758 1.02150 1.20557 0.96154 0.92638 1.03036 1.19916 0.98991 0.96281 0.93137 1.21035 1.00099 0.94994 0.97523 1.21091 0.99602 0.94965 0.97918 1.21040 1.00619 0.99903 0.92164 1.19727 0.99464 0.94673 0.94251 1.20870 0.90606 0.97432 0.93966 1.60360 1.03568 1.61881 1.05411 1.22116 0.96756 0.96541 0.92618 1.21130 0.94387 0.98622 0.86033 1.45899 1.13892 1.55174 1.24478 1.20299 0.81307 0.80457 0.86147 1.90711 1.45045 1.40227 1.63015 1.23527 1.07693 1.02840 0.96309 1.85414 1.02051 1.68328 1.27568 1.22871 1.00662 1.36808 1.08094 0.90927 1.24989 0.94633 0.95602 0.98334 1.70018 1.01690 1.40245 1.38320 0.86167 0.77589 0.79704 0.82025 1.20266 1.20747 1.19718 1.20908 0.98788 0.93906 0.97614 0.92654 0.92354 0.92534 0.91046 0.90836 0.86286 0.86120 0.86372 0.94171 0.89989 0.83578 0.94476 0.90198 0.90645 0.91809 0.76914 0.89237 0.89181 0.92178 0.85967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.89 37.16 0.37 -0.38 16 2 C -0.09 -0.51 6.06 -27.88 -0.17 -0.68 16 3 C -0.08 -0.63 5.13 -104.62 -0.54 -1.16 16 4 C -0.12 -0.85 9.70 -39.59 -0.38 -1.24 16 5 C -0.12 -0.84 10.05 -39.58 -0.40 -1.24 16 6 C -0.12 -0.88 9.70 -39.58 -0.38 -1.27 16 7 C -0.08 -0.64 5.39 -104.62 -0.56 -1.20 16 8 C 0.10 0.72 5.81 -4.97 -0.03 0.69 16 9 N -0.68 -5.68 6.49 -115.06 -0.75 -6.43 16 10 C 0.05 0.41 5.80 -3.82 -0.02 0.39 16 11 C 0.12 1.45 5.94 -4.04 -0.02 1.42 16 12 N -0.74 -9.82 5.56 -60.29 -0.33 -10.15 16 13 C 0.53 10.04 7.85 -10.99 -0.09 9.95 16 14 O -0.52 -11.96 15.86 5.55 0.09 -11.87 16 15 C -0.15 -3.09 6.16 36.00 0.22 -2.87 16 16 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 17 C -0.54 -15.34 9.50 30.94 0.29 -15.04 16 18 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 19 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.26 13.22 55.49 0.73 -25.53 16 21 Si 0.92 21.43 29.55 -169.99 -5.02 16.41 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 25 C -0.09 -0.75 9.36 -39.58 -0.37 -1.12 16 26 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 30 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 31 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 32 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 33 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 34 H 0.04 0.26 8.08 -51.93 -0.42 -0.16 16 35 H 0.08 0.56 8.09 -51.93 -0.42 0.14 16 36 H 0.35 2.82 8.72 -39.29 -0.34 2.47 16 37 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.40 3.99 8.47 -40.82 -0.35 3.65 16 42 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 43 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 44 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 45 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 395.57 15.07 5.96 5.96 Total: -1.00 -34.71 395.57 -11.12 -45.83 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -7.41 Total: 1.38 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: -2.18 Total: -11.74 kcal Atomic # 7 Polarization: -41.76 SS G_CDS: -0.35 Total: -42.11 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.09 Total: -11.87 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.71 -11.12 -45.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123787659.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.688 kcal (2) G-P(sol) polarization free energy of solvation -34.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds