Wall clock time and date at job start Tue Mar 31 2020 12:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.47008 * 2 1 4 4 C 1.38253 * 119.99890 * 270.01705 * 3 2 1 5 5 C 1.38212 * 119.99859 * 179.97438 * 4 3 2 6 6 C 1.38255 * 120.00284 * 0.02562 * 5 4 3 7 7 C 1.38217 * 119.99740 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99801 * 179.97438 * 7 6 5 9 9 N 1.46898 * 109.46881 * 269.94972 * 8 7 6 10 10 C 1.46899 * 110.99851 * 179.97438 * 9 8 7 11 11 C 1.53008 * 109.46905 * 179.97438 * 10 9 8 12 12 N 1.46499 * 109.46625 * 180.02562 * 11 10 9 13 13 C 1.34784 * 119.99806 * 180.02562 * 12 11 10 14 14 O 1.21285 * 119.99576 * 359.97438 * 13 12 11 15 15 C 1.50692 * 120.00002 * 180.02562 * 13 12 11 16 16 S 1.81007 * 109.47163 * 179.97438 * 15 13 12 17 17 C 1.76197 * 100.00166 * 179.97438 * 16 15 13 18 18 H 1.08003 * 119.99676 * 359.97438 * 17 16 15 19 19 C 1.38792 * 120.00064 * 180.02562 * 17 16 15 20 20 N 1.31633 * 120.00249 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00285 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46892 * 89.99980 * 21 19 17 23 23 H 1.48497 * 109.47308 * 209.99885 * 21 19 17 24 24 H 1.48504 * 109.47145 * 330.00351 * 21 19 17 25 25 C 1.38215 * 119.99815 * 89.99868 * 3 2 1 26 26 H 1.09000 * 109.47148 * 60.00017 * 1 2 3 27 27 H 1.09005 * 109.47028 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47213 * 299.99878 * 1 2 3 29 29 H 1.08990 * 109.47328 * 239.99584 * 2 1 3 30 30 H 1.09006 * 109.47142 * 119.99509 * 2 1 3 31 31 H 1.08002 * 120.00364 * 0.02562 * 4 3 2 32 32 H 1.08000 * 119.99961 * 180.02562 * 5 4 3 33 33 H 1.07997 * 120.00435 * 180.02562 * 6 5 4 34 34 H 1.08994 * 109.46953 * 29.94909 * 8 7 6 35 35 H 1.08996 * 109.46834 * 149.95334 * 8 7 6 36 36 H 1.00903 * 111.00217 * 56.04860 * 9 8 7 37 37 H 1.08993 * 109.47361 * 299.99766 * 10 9 8 38 38 H 1.08997 * 109.47196 * 60.00602 * 10 9 8 39 39 H 1.08993 * 109.46995 * 300.00082 * 11 10 9 40 40 H 1.08997 * 109.46626 * 60.00346 * 11 10 9 41 41 H 0.96998 * 120.00729 * 0.02562 * 12 11 10 42 42 H 1.09002 * 109.47471 * 299.99556 * 15 13 12 43 43 H 1.09002 * 109.47453 * 59.99467 * 15 13 12 44 44 H 0.96996 * 120.00358 * 180.02562 * 20 19 17 45 45 H 1.07995 * 120.00164 * 359.72517 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2624 2.0727 -1.1973 5 6 2.7225 3.3759 -1.1973 6 6 2.9533 4.0276 0.0000 7 6 2.7243 3.3756 1.1970 8 6 2.9764 4.0857 2.5021 9 7 4.3639 3.8543 2.9254 10 6 4.6467 4.5337 4.1967 11 6 6.0976 4.2695 4.6044 12 7 6.3794 4.9466 5.8727 13 6 7.6038 4.8540 6.4285 14 8 8.4720 4.2098 5.8789 15 6 7.8935 5.5499 7.7333 16 16 9.6099 5.2376 8.2156 17 6 9.6724 6.1413 9.7269 18 1 8.7968 6.6670 10.0782 19 6 10.8470 6.1783 10.4653 20 7 11.9146 5.5387 10.0363 21 14 10.9135 7.1369 12.0672 22 1 10.5268 6.2482 13.1923 23 1 12.2933 7.6404 12.2859 24 1 9.9733 8.2842 11.9969 25 6 2.2626 2.0724 1.1970 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8898 30 1 1.8933 -0.5138 0.8901 31 1 2.0817 1.5638 -2.1327 32 1 2.9019 3.8853 -2.1326 33 1 3.3125 5.0461 0.0000 34 1 2.8097 5.1549 2.3720 35 1 2.2959 3.7017 3.2620 36 1 5.0134 4.1431 2.2092 37 1 4.4918 5.6060 4.0780 38 1 3.9778 4.1532 4.9687 39 1 6.2521 3.1971 4.7233 40 1 6.7668 4.6497 3.8326 41 1 5.6849 5.4615 6.3124 42 1 7.7383 6.6224 7.6154 43 1 7.2245 5.1687 8.5048 44 1 12.7354 5.5643 10.5525 45 1 2.0784 1.5648 2.1323 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123787659.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:44 Heat of formation + Delta-G solvation = -53.288082 kcal Electronic energy + Delta-G solvation = -22553.274819 eV Core-core repulsion = 19080.915263 eV Total energy + Delta-G solvation = -3472.359556 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.65544 -40.42866 -37.76419 -35.78492 -34.74063 -34.57739 -32.62356 -31.22821 -30.28710 -28.76218 -27.63708 -25.66560 -24.76288 -23.17110 -22.77357 -21.79428 -21.07172 -19.83918 -17.90676 -17.60907 -17.19097 -17.14432 -16.87300 -16.61254 -16.20224 -15.99209 -15.84464 -15.28746 -15.06203 -14.76427 -14.63098 -14.51683 -14.31396 -14.00530 -13.88594 -13.51570 -13.27763 -13.16155 -12.91779 -12.88595 -12.71554 -12.61312 -12.51675 -12.40627 -12.05011 -11.73045 -11.62723 -11.62106 -11.13774 -11.00543 -10.27111 -10.14636 -9.72997 -9.59511 -9.37492 -8.66645 -8.34060 -6.12527 0.42296 0.52111 1.27043 1.43254 1.47421 1.57815 1.60466 2.19895 2.28319 2.81809 3.00158 3.30242 3.47207 3.75818 3.86851 3.88075 4.02572 4.04672 4.13622 4.26610 4.30528 4.31540 4.39762 4.49030 4.50905 4.51546 4.59203 4.64522 4.72023 4.80332 4.91302 4.93922 5.03663 5.10114 5.20517 5.24303 5.38352 5.39292 5.42434 5.59180 5.68709 5.76015 5.92081 6.15843 6.20375 6.31850 6.49864 7.07171 7.24021 8.75221 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.035909 B = 0.001496 C = 0.001488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.567712 B =18712.167295 C =18809.683795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.086 4.086 3 C -0.093 4.093 4 C -0.129 4.129 5 C -0.125 4.125 6 C -0.128 4.128 7 C -0.090 4.090 8 C 0.105 3.895 9 N -0.691 5.691 10 C 0.063 3.937 11 C 0.125 3.875 12 N -0.711 5.711 13 C 0.533 3.467 14 O -0.567 6.567 15 C -0.128 4.128 16 S -0.154 6.154 17 C -0.547 4.547 18 H 0.084 0.916 19 C 0.013 3.987 20 N -0.912 5.912 21 Si 1.000 3.000 22 H -0.268 1.268 23 H -0.278 1.278 24 H -0.257 1.257 25 C -0.110 4.110 26 H 0.055 0.945 27 H 0.067 0.933 28 H 0.050 0.950 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.133 0.867 32 H 0.137 0.863 33 H 0.130 0.870 34 H 0.051 0.949 35 H 0.085 0.915 36 H 0.346 0.654 37 H 0.055 0.945 38 H 0.090 0.910 39 H 0.057 0.943 40 H 0.055 0.945 41 H 0.418 0.582 42 H 0.112 0.888 43 H 0.112 0.888 44 H 0.271 0.729 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.827 -3.609 -21.029 35.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.124 4.124 3 C -0.093 4.093 4 C -0.147 4.147 5 C -0.143 4.143 6 C -0.147 4.147 7 C -0.091 4.091 8 C -0.023 4.023 9 N -0.323 5.323 10 C -0.066 4.066 11 C 0.001 3.999 12 N -0.365 5.365 13 C 0.319 3.681 14 O -0.446 6.446 15 C -0.280 4.280 16 S 0.073 5.927 17 C -0.695 4.695 18 H 0.102 0.898 19 C -0.191 4.191 20 N -0.548 5.548 21 Si 0.821 3.179 22 H -0.193 1.193 23 H -0.203 1.203 24 H -0.181 1.181 25 C -0.128 4.128 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.070 0.930 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.151 0.849 32 H 0.155 0.845 33 H 0.148 0.852 34 H 0.070 0.930 35 H 0.103 0.897 36 H 0.164 0.836 37 H 0.073 0.927 38 H 0.108 0.892 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.255 0.745 42 H 0.130 0.870 43 H 0.130 0.870 44 H 0.080 0.920 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -26.390 -5.320 -21.625 34.531 hybrid contribution -0.600 2.152 1.310 2.590 sum -26.990 -3.169 -20.315 33.929 Atomic orbital electron populations 1.21720 0.94120 1.02318 1.01891 1.20583 0.96638 0.91850 1.03282 1.20149 0.98890 0.97030 0.93184 1.21295 1.00013 0.95295 0.98069 1.21375 0.99180 0.95110 0.98637 1.21257 1.00662 1.00580 0.92180 1.19867 0.99632 0.94753 0.94799 1.20852 0.89756 0.98015 0.93725 1.60335 1.04302 1.62258 1.05442 1.21970 0.94073 0.97655 0.92940 1.21189 0.96770 0.97234 0.84756 1.45593 1.12376 1.54059 1.24517 1.20095 0.82402 0.79950 0.85689 1.90701 1.47057 1.42602 1.64196 1.23365 1.02467 1.04503 0.97631 1.85616 1.09159 1.69311 1.28648 1.23215 1.01358 1.36786 1.08103 0.89794 1.26134 0.94025 0.96529 1.02449 1.70187 1.02497 1.41956 1.40180 0.84941 0.77935 0.78351 0.76664 1.19316 1.20339 1.18133 1.21055 0.99510 0.94336 0.97946 0.92637 0.91383 0.93037 0.90367 0.91008 0.84875 0.84485 0.85175 0.93044 0.89660 0.83560 0.92712 0.89167 0.92476 0.92625 0.74489 0.87002 0.87020 0.92000 0.85970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.89 71.98 0.71 -0.63 16 2 C -0.09 -0.96 6.06 29.85 0.18 -0.77 16 3 C -0.09 -1.34 5.13 -19.87 -0.10 -1.44 16 4 C -0.13 -1.73 9.70 22.27 0.22 -1.51 16 5 C -0.13 -1.64 10.05 22.27 0.22 -1.41 16 6 C -0.13 -1.76 9.70 22.27 0.22 -1.54 16 7 C -0.09 -1.33 5.39 -19.86 -0.11 -1.44 16 8 C 0.10 1.32 5.81 85.56 0.50 1.82 16 9 N -0.69 -10.43 6.49 -517.94 -3.36 -13.79 16 10 C 0.06 0.90 5.80 86.31 0.50 1.40 16 11 C 0.12 2.78 5.94 86.38 0.51 3.29 16 12 N -0.71 -17.43 5.56 -463.06 -2.57 -20.00 16 13 C 0.53 19.71 7.85 87.65 0.69 20.40 16 14 O -0.57 -26.83 15.86 -3.04 -0.05 -26.88 16 15 C -0.13 -5.04 6.16 71.23 0.44 -4.60 16 16 S -0.15 -8.63 20.57 -56.49 -1.16 -9.79 16 17 C -0.55 -31.24 9.50 67.95 0.65 -30.59 16 18 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 19 C 0.01 0.76 5.49 84.86 0.47 1.23 16 20 N -0.91 -56.23 13.22 21.65 0.29 -55.95 16 21 Si 1.00 43.51 29.55 68.60 2.03 45.54 16 22 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 23 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 24 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 25 C -0.11 -1.72 9.36 22.27 0.21 -1.51 16 26 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.07 0.50 8.14 -2.38 -0.02 0.48 16 28 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.08 0.74 8.08 -2.39 -0.02 0.72 16 30 H 0.07 0.80 8.09 -2.38 -0.02 0.78 16 31 H 0.13 1.31 8.06 -2.91 -0.02 1.28 16 32 H 0.14 1.24 8.06 -2.91 -0.02 1.21 16 33 H 0.13 1.37 8.06 -2.91 -0.02 1.35 16 34 H 0.05 0.54 8.08 -2.39 -0.02 0.52 16 35 H 0.09 1.01 8.09 -2.39 -0.02 0.99 16 36 H 0.35 5.20 8.72 -89.69 -0.78 4.42 16 37 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.09 1.14 8.14 -2.39 -0.02 1.13 16 39 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.06 1.36 8.14 -2.39 -0.02 1.35 16 41 H 0.42 6.97 8.47 -92.71 -0.79 6.19 16 42 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 43 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 44 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 45 H 0.12 1.80 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -77.25 395.57 -0.12 -77.37 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: -0.59 Total: 20.83 kcal Atomic # 6 Polarization: -22.63 SS G_CDS: 5.30 Total: -17.33 kcal Atomic # 7 Polarization: -84.09 SS G_CDS: -5.65 Total: -89.74 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: -0.05 Total: -26.88 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 16 Polarization: -8.63 SS G_CDS: -1.16 Total: -9.79 kcal Total: -77.25 -0.12 -77.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123787659.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.080 kcal (2) G-P(sol) polarization free energy of solvation -77.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds