Wall clock time and date at job start Tue Mar 31 2020 12:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50705 * 109.46967 * 2 1 4 4 C 1.38233 * 120.00139 * 90.00167 * 3 2 1 5 5 C 1.38233 * 119.99661 * 179.97438 * 4 3 2 6 6 C 1.38232 * 120.00410 * 0.02562 * 5 4 3 7 7 C 1.50705 * 120.00313 * 179.97438 * 6 5 4 8 8 N 1.46898 * 109.46661 * 90.00474 * 7 6 5 9 9 C 1.46906 * 110.99888 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.46897 * 179.97438 * 9 8 7 11 11 N 1.46506 * 109.46684 * 179.97438 * 10 9 8 12 12 C 1.34777 * 119.99873 * 179.97438 * 11 10 9 13 13 O 1.21284 * 119.99754 * 0.02562 * 12 11 10 14 14 C 1.50696 * 120.00137 * 180.02562 * 12 11 10 15 15 S 1.81003 * 109.47228 * 180.02562 * 14 12 11 16 16 C 1.76206 * 99.99904 * 180.02562 * 15 14 12 17 17 H 1.07998 * 119.99972 * 0.02562 * 16 15 14 18 18 C 1.38795 * 119.99962 * 179.97438 * 16 15 14 19 19 N 1.31632 * 120.00383 * 179.97438 * 18 16 15 20 20 Si 1.86808 * 120.00006 * 359.97438 * 18 16 15 21 21 H 1.48496 * 109.47056 * 89.99893 * 20 18 16 22 22 H 1.48500 * 109.47096 * 209.99880 * 20 18 16 23 23 H 1.48496 * 109.46964 * 329.99806 * 20 18 16 24 24 C 1.38237 * 120.00103 * 0.26348 * 6 5 4 25 25 C 1.38236 * 119.99450 * 270.01734 * 3 2 1 26 26 H 1.08997 * 109.47122 * 60.00513 * 1 2 3 27 27 H 1.09000 * 109.46981 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47205 * 300.00397 * 1 2 3 29 29 H 1.08995 * 109.47205 * 239.99602 * 2 1 3 30 30 H 1.08997 * 109.47122 * 119.99486 * 2 1 3 31 31 H 1.07993 * 120.00129 * 359.97438 * 4 3 2 32 32 H 1.08006 * 119.99729 * 180.02562 * 5 4 3 33 33 H 1.08995 * 109.47155 * 330.00523 * 7 6 5 34 34 H 1.08997 * 109.47111 * 210.00445 * 7 6 5 35 35 H 1.00902 * 111.00533 * 56.04452 * 8 7 6 36 36 H 1.09000 * 109.47033 * 300.00113 * 9 8 7 37 37 H 1.09001 * 109.46544 * 60.00058 * 9 8 7 38 38 H 1.09000 * 109.47486 * 299.99976 * 10 9 8 39 39 H 1.09001 * 109.47362 * 60.00699 * 10 9 8 40 40 H 0.96999 * 120.00080 * 0.02562 * 11 10 9 41 41 H 1.09000 * 109.46978 * 300.00347 * 14 12 11 42 42 H 1.08996 * 109.47197 * 59.99985 * 14 12 11 43 43 H 0.96995 * 120.00223 * 180.02562 * 19 18 16 44 44 H 1.07998 * 120.00627 * 179.72604 * 24 6 5 45 45 H 1.08000 * 120.00849 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2627 2.0725 1.1971 5 6 2.7239 3.3756 1.1970 6 6 2.9543 4.0273 -0.0001 7 6 3.4566 5.4481 -0.0002 8 7 4.9256 5.4481 -0.0004 9 6 5.4521 6.8195 0.0001 10 6 6.9815 6.7786 0.0005 11 7 7.5065 8.1464 0.0004 12 6 8.8377 8.3572 0.0013 13 8 9.6009 7.4146 0.0017 14 6 9.3778 9.7640 0.0017 15 16 11.1872 9.7157 0.0021 16 6 11.5394 11.4422 0.0034 17 1 10.7309 12.1582 0.0041 18 6 12.8558 11.8819 0.0045 19 7 13.1190 13.1716 0.0050 20 14 14.2543 10.6433 0.0054 21 1 14.6259 10.3154 -1.3944 22 1 15.4282 11.2227 0.7065 23 1 13.8204 9.4074 0.7049 24 6 2.7182 3.3777 -1.1973 25 6 2.2623 2.0725 -1.1972 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 2.0824 1.5636 2.1324 32 1 2.9044 3.8847 2.1323 33 1 3.0934 5.9620 0.8898 34 1 3.0931 5.9619 -0.8902 35 1 5.2871 4.9219 -0.7818 36 1 5.1024 7.3433 -0.8896 37 1 5.1026 7.3424 0.8904 38 1 7.3308 6.2550 0.8905 39 1 7.3313 6.2556 -0.8895 40 1 6.8961 8.9002 0.0005 41 1 9.0288 10.2874 -0.8884 42 1 9.0278 10.2873 0.8915 43 1 14.0390 13.4789 0.0054 44 1 2.8939 3.8882 -2.1326 45 1 2.0816 1.5637 -2.1326 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123799277.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:49 Heat of formation + Delta-G solvation = -29.967765 kcal Electronic energy + Delta-G solvation = -22480.886260 eV Core-core repulsion = 19009.537949 eV Total energy + Delta-G solvation = -3471.348311 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.96098 -39.28997 -37.08892 -35.04757 -33.85489 -32.43552 -31.27916 -31.06353 -29.69209 -27.69521 -25.63783 -25.24388 -23.12751 -23.01539 -22.39641 -20.86714 -20.46134 -17.90635 -16.98273 -16.45007 -16.36476 -16.04177 -15.80270 -15.60780 -15.05230 -14.97784 -14.71335 -14.26719 -14.16395 -13.97708 -13.75587 -13.67167 -13.34010 -13.24546 -12.92252 -12.78909 -12.30775 -12.27442 -12.05124 -11.83460 -11.65436 -11.51300 -11.26201 -11.20419 -11.15898 -11.00197 -10.60328 -9.85532 -9.55003 -9.26333 -9.04382 -9.02014 -8.96422 -8.78698 -8.49634 -6.91418 -6.28618 -4.00412 0.92699 1.06976 2.73667 2.98128 3.18261 3.33579 3.39937 3.51525 3.62924 4.12054 4.29224 4.33840 4.38036 4.47434 4.60149 4.66046 4.66548 4.76792 4.83514 4.89489 4.97339 5.06899 5.10563 5.10763 5.17834 5.20811 5.27548 5.32513 5.43948 5.48819 5.64165 5.69560 5.73165 5.75545 5.78585 5.83560 6.01264 6.04936 6.25298 6.26054 6.43883 6.55612 6.66206 6.91869 7.59451 7.94421 8.41754 8.49075 9.17672 10.80614 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.044343 B = 0.001483 C = 0.001460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.289274 B =18869.783866 C =19168.029699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.087 4.087 3 C -0.082 4.082 4 C -0.120 4.120 5 C -0.093 4.093 6 C -0.089 4.089 7 C 0.100 3.900 8 N -0.681 5.681 9 C 0.049 3.951 10 C 0.123 3.877 11 N -0.737 5.737 12 C 0.531 3.469 13 O -0.518 6.518 14 C -0.124 4.124 15 S -0.142 6.142 16 C -0.522 4.522 17 H 0.088 0.912 18 C 0.096 3.904 19 N -0.881 5.881 20 Si 0.856 3.144 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.235 1.235 24 C -0.110 4.110 25 C -0.119 4.119 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.121 0.879 32 H 0.123 0.877 33 H 0.082 0.918 34 H 0.040 0.960 35 H 0.346 0.654 36 H 0.038 0.962 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.399 0.601 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.271 0.729 44 H 0.119 0.881 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.540 -22.095 -0.661 36.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.124 4.124 3 C -0.082 4.082 4 C -0.138 4.138 5 C -0.111 4.111 6 C -0.089 4.089 7 C -0.028 4.028 8 N -0.313 5.313 9 C -0.081 4.081 10 C -0.002 4.002 11 N -0.392 5.392 12 C 0.317 3.683 13 O -0.392 6.392 14 C -0.275 4.275 15 S 0.085 5.915 16 C -0.669 4.669 17 H 0.106 0.894 18 C -0.112 4.112 19 N -0.517 5.517 20 Si 0.681 3.319 21 H -0.192 1.192 22 H -0.199 1.199 23 H -0.159 1.159 24 C -0.129 4.129 25 C -0.137 4.137 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.139 0.861 32 H 0.141 0.859 33 H 0.100 0.900 34 H 0.058 0.942 35 H 0.164 0.836 36 H 0.056 0.944 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.082 0.918 40 H 0.233 0.767 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.081 0.919 44 H 0.137 0.863 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -27.074 -23.586 0.025 35.907 hybrid contribution -0.644 1.544 -0.969 1.933 sum -27.718 -22.042 -0.945 35.426 Atomic orbital electron populations 1.21744 0.94689 1.01740 1.02212 1.20559 0.96193 0.92713 1.02930 1.19922 0.98815 0.96201 0.93252 1.21039 1.00219 0.94965 0.97539 1.21028 0.97817 0.94534 0.97728 1.19725 1.00007 0.95880 0.93318 1.20865 0.87566 0.92873 1.01530 1.60353 1.06660 1.13540 1.50713 1.22117 0.94441 0.90096 1.01417 1.21145 0.91974 0.83989 1.03047 1.45858 1.07179 1.08289 1.77886 1.20269 0.81518 0.91276 0.75273 1.90708 1.56843 1.44107 1.47572 1.23276 1.02792 0.95560 1.05827 1.84804 0.97199 1.12109 1.97426 1.22323 0.96742 0.89095 1.58788 0.89389 1.24706 0.98209 0.95181 0.93143 1.69938 1.20560 1.13130 1.48104 0.86738 0.82175 0.83024 0.79939 1.19210 1.19921 1.15906 1.21040 0.99478 0.94907 0.97449 1.20983 1.00385 0.94810 0.97540 0.92589 0.92374 0.92541 0.91037 0.90991 0.86137 0.85860 0.89965 0.94188 0.83601 0.94422 0.90136 0.90589 0.91771 0.76734 0.88502 0.88405 0.91943 0.86321 0.86216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.89 37.16 0.37 -0.30 16 2 C -0.09 -0.45 6.06 -27.88 -0.17 -0.62 16 3 C -0.08 -0.57 5.13 -104.62 -0.54 -1.11 16 4 C -0.12 -0.87 9.70 -39.59 -0.38 -1.25 16 5 C -0.09 -0.71 9.70 -39.59 -0.38 -1.10 16 6 C -0.09 -0.68 5.39 -104.62 -0.56 -1.24 16 7 C 0.10 0.69 5.81 -4.97 -0.03 0.66 16 8 N -0.68 -5.41 6.49 -115.06 -0.75 -6.16 16 9 C 0.05 0.38 5.80 -3.82 -0.02 0.36 16 10 C 0.12 1.36 5.94 -4.04 -0.02 1.34 16 11 N -0.74 -9.22 5.56 -60.29 -0.33 -9.56 16 12 C 0.53 9.46 7.85 -10.99 -0.09 9.37 16 13 O -0.52 -11.34 15.86 5.55 0.09 -11.25 16 14 C -0.12 -2.39 6.16 36.00 0.22 -2.17 16 15 S -0.14 -3.61 18.55 -107.50 -1.99 -5.61 16 16 C -0.52 -15.08 10.04 30.94 0.31 -14.77 16 17 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 18 C 0.10 2.82 5.50 -17.43 -0.10 2.73 16 19 N -0.88 -26.62 13.97 55.49 0.78 -25.85 16 20 Si 0.86 21.87 27.74 -169.99 -4.72 17.15 16 21 H -0.27 -6.74 7.11 56.52 0.40 -6.33 16 22 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.24 -6.01 6.74 56.52 0.38 -5.62 16 24 C -0.11 -0.79 9.70 -39.58 -0.38 -1.18 16 25 C -0.12 -0.84 9.70 -39.58 -0.38 -1.22 16 26 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 27 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 30 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 31 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 32 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 33 H 0.08 0.54 8.09 -51.93 -0.42 0.12 16 34 H 0.04 0.25 8.08 -51.93 -0.42 -0.17 16 35 H 0.35 2.67 8.72 -39.29 -0.34 2.33 16 36 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.40 3.75 8.47 -40.82 -0.35 3.40 16 41 H 0.10 1.72 8.14 -51.92 -0.42 1.30 16 42 H 0.10 1.75 8.14 -51.92 -0.42 1.32 16 43 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 44 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 45 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 LS Contribution 392.88 15.07 5.92 5.92 Total: -1.00 -34.31 392.88 -10.61 -44.92 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -7.44 Total: 0.91 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: -2.16 Total: -10.48 kcal Atomic # 7 Polarization: -41.26 SS G_CDS: -0.31 Total: -41.56 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.09 Total: -11.25 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.72 Total: 17.15 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.31 -10.61 -44.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123799277.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.955 kcal (2) G-P(sol) polarization free energy of solvation -34.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds