Wall clock time and date at job start Tue Mar 31 2020 12:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50705 * 109.46967 * 2 1 4 4 C 1.38233 * 120.00139 * 90.00167 * 3 2 1 5 5 C 1.38233 * 119.99661 * 179.97438 * 4 3 2 6 6 C 1.38232 * 120.00410 * 0.02562 * 5 4 3 7 7 C 1.50705 * 120.00313 * 179.97438 * 6 5 4 8 8 N 1.46898 * 109.46661 * 90.00474 * 7 6 5 9 9 C 1.46906 * 110.99888 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.46897 * 179.97438 * 9 8 7 11 11 N 1.46506 * 109.46684 * 179.97438 * 10 9 8 12 12 C 1.34777 * 119.99873 * 179.97438 * 11 10 9 13 13 O 1.21284 * 119.99754 * 0.02562 * 12 11 10 14 14 C 1.50696 * 120.00137 * 180.02562 * 12 11 10 15 15 S 1.81003 * 109.47228 * 180.02562 * 14 12 11 16 16 C 1.76206 * 99.99904 * 180.02562 * 15 14 12 17 17 H 1.07998 * 119.99972 * 0.02562 * 16 15 14 18 18 C 1.38795 * 119.99962 * 179.97438 * 16 15 14 19 19 N 1.31632 * 120.00383 * 179.97438 * 18 16 15 20 20 Si 1.86808 * 120.00006 * 359.97438 * 18 16 15 21 21 H 1.48496 * 109.47056 * 89.99893 * 20 18 16 22 22 H 1.48500 * 109.47096 * 209.99880 * 20 18 16 23 23 H 1.48496 * 109.46964 * 329.99806 * 20 18 16 24 24 C 1.38237 * 120.00103 * 0.26348 * 6 5 4 25 25 C 1.38236 * 119.99450 * 270.01734 * 3 2 1 26 26 H 1.08997 * 109.47122 * 60.00513 * 1 2 3 27 27 H 1.09000 * 109.46981 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47205 * 300.00397 * 1 2 3 29 29 H 1.08995 * 109.47205 * 239.99602 * 2 1 3 30 30 H 1.08997 * 109.47122 * 119.99486 * 2 1 3 31 31 H 1.07993 * 120.00129 * 359.97438 * 4 3 2 32 32 H 1.08006 * 119.99729 * 180.02562 * 5 4 3 33 33 H 1.08995 * 109.47155 * 330.00523 * 7 6 5 34 34 H 1.08997 * 109.47111 * 210.00445 * 7 6 5 35 35 H 1.00902 * 111.00533 * 56.04452 * 8 7 6 36 36 H 1.09000 * 109.47033 * 300.00113 * 9 8 7 37 37 H 1.09001 * 109.46544 * 60.00058 * 9 8 7 38 38 H 1.09000 * 109.47486 * 299.99976 * 10 9 8 39 39 H 1.09001 * 109.47362 * 60.00699 * 10 9 8 40 40 H 0.96999 * 120.00080 * 0.02562 * 11 10 9 41 41 H 1.09000 * 109.46978 * 300.00347 * 14 12 11 42 42 H 1.08996 * 109.47197 * 59.99985 * 14 12 11 43 43 H 0.96995 * 120.00223 * 180.02562 * 19 18 16 44 44 H 1.07998 * 120.00627 * 179.72604 * 24 6 5 45 45 H 1.08000 * 120.00849 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2627 2.0725 1.1971 5 6 2.7239 3.3756 1.1970 6 6 2.9543 4.0273 -0.0001 7 6 3.4566 5.4481 -0.0002 8 7 4.9256 5.4481 -0.0004 9 6 5.4521 6.8195 0.0001 10 6 6.9815 6.7786 0.0005 11 7 7.5065 8.1464 0.0004 12 6 8.8377 8.3572 0.0013 13 8 9.6009 7.4146 0.0017 14 6 9.3778 9.7640 0.0017 15 16 11.1872 9.7157 0.0021 16 6 11.5394 11.4422 0.0034 17 1 10.7309 12.1582 0.0041 18 6 12.8558 11.8819 0.0045 19 7 13.1190 13.1716 0.0050 20 14 14.2543 10.6433 0.0054 21 1 14.6259 10.3154 -1.3944 22 1 15.4282 11.2227 0.7065 23 1 13.8204 9.4074 0.7049 24 6 2.7182 3.3777 -1.1973 25 6 2.2623 2.0725 -1.1972 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 2.0824 1.5636 2.1324 32 1 2.9044 3.8847 2.1323 33 1 3.0934 5.9620 0.8898 34 1 3.0931 5.9619 -0.8902 35 1 5.2871 4.9219 -0.7818 36 1 5.1024 7.3433 -0.8896 37 1 5.1026 7.3424 0.8904 38 1 7.3308 6.2550 0.8905 39 1 7.3313 6.2556 -0.8895 40 1 6.8961 8.9002 0.0005 41 1 9.0288 10.2874 -0.8884 42 1 9.0278 10.2873 0.8915 43 1 14.0390 13.4789 0.0054 44 1 2.8939 3.8882 -2.1326 45 1 2.0816 1.5637 -2.1326 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123799277.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:48 Heat of formation + Delta-G solvation = -52.807507 kcal Electronic energy + Delta-G solvation = -22481.876666 eV Core-core repulsion = 19009.537949 eV Total energy + Delta-G solvation = -3472.338717 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.68992 -40.42661 -37.80353 -35.90278 -34.67819 -34.59972 -31.97812 -31.78958 -30.73595 -28.58610 -27.82583 -25.88650 -23.63213 -23.52649 -23.14999 -21.82923 -21.34949 -19.89707 -17.97055 -17.60764 -17.22060 -17.06211 -16.90010 -16.62703 -16.21271 -15.95955 -15.88204 -15.23601 -15.03620 -14.88900 -14.69784 -14.54139 -14.42367 -14.24879 -13.96750 -13.60786 -13.42669 -13.34330 -13.01418 -12.82480 -12.71767 -12.56494 -12.46617 -12.39052 -12.05102 -11.86572 -11.65311 -11.62983 -11.16862 -11.05659 -10.53278 -10.16721 -9.79402 -9.58614 -9.33666 -8.99585 -8.51409 -6.22306 0.40026 0.53855 0.99047 1.31654 1.47130 1.55553 1.55791 2.15994 2.25744 2.70005 2.82350 2.87063 3.44306 3.77771 3.84671 3.90268 3.97009 4.03126 4.11991 4.17276 4.22766 4.25384 4.47413 4.47611 4.50221 4.51562 4.60872 4.65022 4.73836 4.80103 4.91311 4.93722 5.06558 5.08953 5.18039 5.24346 5.36545 5.37805 5.53397 5.70940 5.71949 5.75957 5.92270 6.11618 6.15462 6.32630 6.45712 6.94040 7.18635 8.60968 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.044343 B = 0.001483 C = 0.001460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.289274 B =18869.783866 C =19168.029699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.086 4.086 3 C -0.090 4.090 4 C -0.131 4.131 5 C -0.106 4.106 6 C -0.099 4.099 7 C 0.105 3.895 8 N -0.691 5.691 9 C 0.061 3.939 10 C 0.125 3.875 11 N -0.710 5.710 12 C 0.535 3.465 13 O -0.564 6.564 14 C -0.111 4.111 15 S -0.178 6.178 16 C -0.529 4.529 17 H 0.063 0.937 18 C 0.047 3.953 19 N -0.917 5.917 20 Si 0.913 3.087 21 H -0.262 1.262 22 H -0.259 1.259 23 H -0.238 1.238 24 C -0.118 4.118 25 C -0.130 4.130 26 H 0.052 0.948 27 H 0.068 0.932 28 H 0.052 0.948 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.131 0.869 32 H 0.127 0.873 33 H 0.085 0.915 34 H 0.050 0.950 35 H 0.346 0.654 36 H 0.054 0.946 37 H 0.090 0.910 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.418 0.582 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.277 0.723 44 H 0.131 0.869 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.991 -23.162 -0.929 37.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.123 4.123 3 C -0.090 4.090 4 C -0.149 4.149 5 C -0.125 4.125 6 C -0.100 4.100 7 C -0.023 4.023 8 N -0.323 5.323 9 C -0.068 4.068 10 C 0.001 3.999 11 N -0.365 5.365 12 C 0.320 3.680 13 O -0.442 6.442 14 C -0.262 4.262 15 S 0.048 5.952 16 C -0.677 4.677 17 H 0.081 0.919 18 C -0.158 4.158 19 N -0.555 5.555 20 Si 0.735 3.265 21 H -0.187 1.187 22 H -0.183 1.183 23 H -0.162 1.162 24 C -0.136 4.136 25 C -0.148 4.148 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.071 0.929 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.149 0.851 32 H 0.145 0.855 33 H 0.104 0.896 34 H 0.068 0.932 35 H 0.165 0.835 36 H 0.072 0.928 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.255 0.745 41 H 0.134 0.866 42 H 0.134 0.866 43 H 0.086 0.914 44 H 0.149 0.851 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -28.590 -24.632 -0.241 37.738 hybrid contribution -0.382 1.853 -0.889 2.090 sum -28.972 -22.779 -1.130 36.872 Atomic orbital electron populations 1.21723 0.94205 1.02331 1.01869 1.20591 0.96556 0.91767 1.03415 1.20182 0.98548 0.97054 0.93211 1.21254 1.00325 0.95085 0.98251 1.21202 0.98228 0.94940 0.98103 1.19861 1.00318 0.96346 0.93435 1.20843 0.86706 0.92613 1.02149 1.60329 1.07460 1.13512 1.51007 1.21982 0.91694 0.90475 1.02642 1.21203 0.94221 0.82504 1.01961 1.45589 1.05554 1.09940 1.75388 1.19973 0.82920 0.89854 0.75261 1.90699 1.58351 1.44963 1.50221 1.23267 0.97855 0.97395 1.07641 1.84749 1.03382 1.09433 1.97599 1.22467 0.96350 0.90607 1.58270 0.91856 1.25539 1.00595 0.96825 0.92849 1.70012 1.21553 1.14762 1.49170 0.85882 0.79649 0.80716 0.80221 1.18684 1.18299 1.16161 1.21250 0.99325 0.95140 0.97895 1.21237 1.00313 0.95017 0.98195 0.92870 0.91320 0.92927 0.90474 0.90588 0.85136 0.85516 0.89632 0.93169 0.83549 0.92797 0.89210 0.92235 0.92412 0.74466 0.86636 0.86638 0.91363 0.85132 0.84952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.89 71.98 0.71 -0.44 16 2 C -0.09 -0.80 6.06 29.85 0.18 -0.62 16 3 C -0.09 -1.18 5.13 -19.86 -0.10 -1.28 16 4 C -0.13 -1.82 9.70 22.27 0.22 -1.60 16 5 C -0.11 -1.56 9.70 22.27 0.22 -1.34 16 6 C -0.10 -1.39 5.39 -19.86 -0.11 -1.50 16 7 C 0.11 1.24 5.81 85.56 0.50 1.74 16 8 N -0.69 -9.66 6.49 -517.92 -3.36 -13.02 16 9 C 0.06 0.80 5.80 86.30 0.50 1.30 16 10 C 0.13 2.55 5.94 86.38 0.51 3.06 16 11 N -0.71 -16.03 5.56 -463.05 -2.57 -18.60 16 12 C 0.53 18.20 7.85 87.66 0.69 18.88 16 13 O -0.56 -24.35 15.86 -3.04 -0.05 -24.40 16 14 C -0.11 -4.10 6.16 71.23 0.44 -3.66 16 15 S -0.18 -9.01 18.55 -56.49 -1.05 -10.06 16 16 C -0.53 -30.79 10.04 67.95 0.68 -30.10 16 17 H 0.06 3.87 8.03 -2.91 -0.02 3.84 16 18 C 0.05 2.78 5.50 84.86 0.47 3.25 16 19 N -0.92 -55.80 13.97 21.65 0.30 -55.50 16 20 Si 0.91 45.09 27.74 68.60 1.90 46.99 16 21 H -0.26 -12.62 7.11 99.48 0.71 -11.92 16 22 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 23 H -0.24 -11.76 6.74 99.48 0.67 -11.09 16 24 C -0.12 -1.55 9.70 22.27 0.22 -1.33 16 25 C -0.13 -1.68 9.70 22.27 0.22 -1.47 16 26 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.08 0.62 8.09 -2.39 -0.02 0.60 16 30 H 0.08 0.63 8.09 -2.39 -0.02 0.61 16 31 H 0.13 1.41 8.06 -2.91 -0.02 1.39 16 32 H 0.13 1.66 8.06 -2.91 -0.02 1.63 16 33 H 0.09 0.95 8.09 -2.39 -0.02 0.93 16 34 H 0.05 0.50 8.08 -2.39 -0.02 0.48 16 35 H 0.35 4.78 8.72 -89.69 -0.78 4.00 16 36 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.42 6.41 8.47 -92.71 -0.79 5.63 16 41 H 0.12 3.87 8.14 -2.40 -0.02 3.85 16 42 H 0.12 3.89 8.14 -2.40 -0.02 3.87 16 43 H 0.28 15.58 8.31 -92.71 -0.77 14.81 16 44 H 0.13 1.31 8.06 -2.91 -0.02 1.29 16 45 H 0.13 1.28 8.06 -2.91 -0.02 1.25 16 Total: -1.00 -74.11 392.88 -0.11 -74.22 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -0.62 Total: 15.47 kcal Atomic # 6 Polarization: -20.44 SS G_CDS: 5.33 Total: -15.10 kcal Atomic # 7 Polarization: -81.49 SS G_CDS: -5.63 Total: -87.12 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: -0.05 Total: -24.40 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.90 Total: 46.99 kcal Atomic # 16 Polarization: -9.01 SS G_CDS: -1.05 Total: -10.06 kcal Total: -74.11 -0.11 -74.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123799277.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.416 kcal (2) G-P(sol) polarization free energy of solvation -74.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds