Wall clock time and date at job start Tue Mar 31 2020 14:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21281 * 120.00202 * 2 1 4 4 N 1.34776 * 120.00040 * 179.97438 * 2 1 3 5 5 C 1.46500 * 119.99926 * 180.02562 * 4 2 1 6 6 H 1.08997 * 109.47390 * 325.00266 * 5 4 2 7 7 C 1.50702 * 109.47026 * 205.00156 * 5 4 2 8 8 O 1.21283 * 120.00378 * 0.02562 * 7 5 4 9 9 N 1.34786 * 119.99954 * 180.02562 * 7 5 4 10 10 C 1.39999 * 119.99954 * 174.89366 * 9 7 5 11 11 C 1.39368 * 119.91436 * 325.54306 * 10 9 7 12 12 C 1.38368 * 120.47583 * 179.72174 * 11 10 9 13 13 C 1.38007 * 120.28136 * 0.55606 * 12 11 10 14 14 F 1.35101 * 120.09214 * 179.70412 * 13 12 11 15 15 C 1.41012 * 119.81569 * 359.71707 * 13 12 11 16 16 C 1.41287 * 120.22864 * 179.97438 * 15 13 12 17 17 H 1.08003 * 120.00511 * 25.32628 * 16 15 13 18 18 C 1.39928 * 119.99925 * 205.32230 * 16 15 13 19 19 N 1.30855 * 119.99979 * 16.68730 * 18 16 15 20 20 Si 1.86803 * 120.00033 * 196.68975 * 18 16 15 21 21 H 1.48501 * 109.47283 * 59.99726 * 20 18 16 22 22 H 1.48502 * 109.46979 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46941 * 299.99687 * 20 18 16 24 24 C 1.38142 * 119.91117 * 145.81232 * 10 9 7 25 25 C 1.52998 * 109.47215 * 85.00484 * 5 4 2 26 26 C 1.53003 * 109.47386 * 59.99894 * 25 5 4 27 27 C 1.53004 * 109.46979 * 299.99652 * 25 5 4 28 28 H 1.08998 * 109.47251 * 269.99694 * 1 2 3 29 29 H 1.08997 * 109.47274 * 30.00304 * 1 2 3 30 30 H 1.09007 * 109.46916 * 150.00249 * 1 2 3 31 31 H 0.97002 * 120.00389 * 0.02562 * 4 2 1 32 32 H 0.96998 * 120.00015 * 354.88961 * 9 7 5 33 33 H 1.08005 * 119.76299 * 359.97438 * 11 10 9 34 34 H 1.07997 * 119.86054 * 180.25481 * 12 11 10 35 35 H 0.96994 * 119.99872 * 179.97438 * 19 18 16 36 36 H 1.07998 * 120.14491 * 359.97438 * 24 10 9 37 37 H 1.09000 * 109.47337 * 180.02562 * 25 5 4 38 38 H 1.09001 * 109.46652 * 300.00430 * 26 25 5 39 39 H 1.08996 * 109.46724 * 60.00087 * 26 25 5 40 40 H 1.09001 * 109.47365 * 180.02562 * 26 25 5 41 41 H 1.09010 * 109.46680 * 60.00234 * 27 25 5 42 42 H 1.08993 * 109.47147 * 179.97438 * 27 25 5 43 43 H 1.08993 * 109.47118 * 300.00689 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0011 6 1 4.0094 -0.3255 -0.5883 7 6 4.1484 -2.4550 -0.5989 8 8 3.3605 -3.2904 -0.9891 9 7 5.4736 -2.6784 -0.7020 10 6 5.9413 -3.9161 -1.1596 11 6 5.2454 -5.0818 -0.8445 12 6 5.6940 -6.3106 -1.2955 13 6 6.8438 -6.3960 -2.0539 14 9 7.2817 -7.5984 -2.4872 15 6 7.5606 -5.2249 -2.3751 16 6 8.7391 -5.3024 -3.1505 17 1 8.8864 -6.1304 -3.8281 18 6 9.7156 -4.3062 -3.0406 19 7 9.7092 -3.4941 -2.0146 20 14 11.0284 -4.1357 -4.3586 21 1 10.3829 -3.8624 -5.6678 22 1 11.9360 -3.0129 -4.0108 23 1 11.8095 -5.3957 -4.4452 24 6 7.0945 -3.9793 -1.9176 25 6 4.1553 -1.0412 1.4383 26 6 3.6450 -2.2227 2.2657 27 6 3.6451 0.2663 2.0475 28 1 -0.3634 -0.0001 1.0276 29 1 -0.3634 0.8899 -0.5139 30 1 -0.3633 -0.8901 -0.5138 31 1 1.6959 -2.0073 0.0005 32 1 6.1033 -1.9817 -0.4592 33 1 4.3472 -5.0251 -0.2475 34 1 5.1447 -7.2071 -1.0489 35 1 10.3863 -2.8038 -1.9382 36 1 7.6356 -3.0761 -2.1581 37 1 5.2453 -1.0407 1.4387 38 1 2.5550 -2.2227 2.2652 39 1 4.0086 -3.1541 1.8316 40 1 4.0076 -2.1328 3.2897 41 1 2.5550 0.2662 2.0470 42 1 4.0076 0.3558 3.0714 43 1 4.0086 1.1079 1.4580 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144368132.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:38 Heat of formation + Delta-G solvation = -110.714131 kcal Electronic energy + Delta-G solvation = -27438.627388 eV Core-core repulsion = 23397.564475 eV Total energy + Delta-G solvation = -4041.062913 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -47.25370 -40.76902 -39.29825 -37.34203 -36.01010 -34.49202 -33.51989 -33.10671 -30.18835 -29.85038 -28.67631 -27.20883 -26.51117 -25.37486 -21.93309 -21.54266 -21.23350 -20.11696 -19.52057 -17.86314 -17.61057 -16.84107 -16.22529 -16.05689 -15.75229 -15.61645 -15.13323 -14.90245 -14.46092 -14.21433 -14.02483 -13.89853 -13.66431 -13.15964 -12.99644 -12.74659 -12.68247 -12.48928 -12.34323 -12.11060 -11.97023 -11.77026 -11.59604 -11.45561 -11.25240 -11.12220 -11.09259 -10.93907 -10.75514 -10.36220 -9.99941 -9.78351 -9.65641 -9.37983 -9.16889 -9.01734 -7.67693 -7.10770 -6.82104 -4.52472 2.27681 2.49294 2.66237 2.91393 2.96383 2.99856 3.03664 3.16258 3.58841 3.83373 4.44124 4.59868 4.63845 4.76032 4.84285 5.04256 5.09427 5.17105 5.36289 5.38575 5.51490 5.61036 5.62653 5.78950 5.86095 5.90449 5.94971 6.03598 6.16043 6.27614 6.30130 6.45221 6.57637 6.76125 6.79236 7.04299 7.37264 7.39960 7.44707 7.55744 7.81862 7.85463 8.06017 8.11872 8.33877 8.50912 8.62882 8.72269 10.01253 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016729 B = 0.003291 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.349424 B = 8504.795334 C = 9294.114492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.513 3.487 3 O -0.545 6.545 4 N -0.707 5.707 5 C 0.130 3.870 6 H 0.113 0.887 7 C 0.508 3.492 8 O -0.523 6.523 9 N -0.656 5.656 10 C 0.141 3.859 11 C -0.206 4.206 12 C -0.111 4.111 13 C -0.032 4.032 14 F -0.163 7.163 15 C 0.099 3.901 16 C -0.452 4.452 17 H 0.084 0.916 18 C 0.077 3.923 19 N -0.792 5.792 20 Si 0.913 3.087 21 H -0.262 1.262 22 H -0.277 1.277 23 H -0.263 1.263 24 C -0.164 4.164 25 C -0.102 4.102 26 C -0.149 4.149 27 C -0.136 4.136 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.410 0.590 32 H 0.405 0.595 33 H 0.110 0.890 34 H 0.104 0.896 35 H 0.283 0.717 36 H 0.131 0.869 37 H 0.085 0.915 38 H 0.055 0.945 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.054 0.946 42 H 0.050 0.950 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.968 7.700 6.911 15.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.300 3.700 3 O -0.423 6.423 4 N -0.361 5.361 5 C 0.021 3.979 6 H 0.130 0.870 7 C 0.294 3.706 8 O -0.399 6.399 9 N -0.300 5.300 10 C 0.049 3.951 11 C -0.227 4.227 12 C -0.131 4.131 13 C -0.053 4.053 14 F -0.142 7.142 15 C 0.095 3.905 16 C -0.481 4.481 17 H 0.102 0.898 18 C -0.141 4.141 19 N -0.417 5.417 20 Si 0.738 3.262 21 H -0.187 1.187 22 H -0.202 1.202 23 H -0.188 1.188 24 C -0.186 4.186 25 C -0.122 4.122 26 C -0.206 4.206 27 C -0.193 4.193 28 H 0.111 0.889 29 H 0.112 0.888 30 H 0.100 0.900 31 H 0.247 0.753 32 H 0.241 0.759 33 H 0.128 0.872 34 H 0.123 0.877 35 H 0.094 0.906 36 H 0.148 0.852 37 H 0.103 0.897 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.069 0.931 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.971 8.026 6.745 15.175 hybrid contribution 0.845 -0.196 -0.471 0.987 sum -10.126 7.830 6.274 14.255 Atomic orbital electron populations 1.21871 0.91573 1.05024 1.04697 1.20723 0.90575 0.83311 0.75372 1.90727 1.70554 1.31364 1.49657 1.45791 1.05738 1.09658 1.74926 1.20879 0.82255 0.97115 0.97623 0.86975 1.20447 0.82995 0.88267 0.78939 1.90700 1.55044 1.46346 1.47791 1.43369 1.06453 1.15651 1.64524 1.17551 0.95904 0.83107 0.98520 1.20059 1.02965 0.90334 1.09373 1.20368 0.95698 0.97230 0.99814 1.17910 0.99518 0.80326 1.07517 1.91273 1.90020 1.43807 1.89091 1.17336 0.92400 0.89123 0.91628 1.19472 1.00600 1.07447 1.20623 0.89791 1.25899 0.98762 0.94055 0.95380 1.69782 1.32142 1.14741 1.25020 0.86266 0.79678 0.78887 0.81420 1.18661 1.20177 1.18793 1.20899 0.96504 0.98528 1.02655 1.21515 1.00912 0.96911 0.92839 1.21850 1.01283 0.97608 0.99891 1.21854 1.01340 0.96187 0.99920 0.88930 0.88846 0.90013 0.75280 0.75947 0.87236 0.87747 0.90568 0.85171 0.89675 0.92554 0.92188 0.92230 0.92747 0.93106 0.91661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.21 10.30 36.00 0.37 -0.84 16 2 C 0.51 5.67 6.29 -10.99 -0.07 5.60 16 3 O -0.55 -7.80 14.22 5.56 0.08 -7.72 16 4 N -0.71 -7.94 4.07 -54.93 -0.22 -8.16 16 5 C 0.13 1.63 2.41 -69.08 -0.17 1.47 16 6 H 0.11 1.45 7.58 -51.93 -0.39 1.06 16 7 C 0.51 8.07 5.69 -10.98 -0.06 8.00 16 8 O -0.52 -9.79 13.58 5.55 0.08 -9.71 16 9 N -0.66 -11.16 5.19 -9.90 -0.05 -11.21 16 10 C 0.14 3.05 6.25 -83.74 -0.52 2.52 16 11 C -0.21 -4.54 8.66 -39.11 -0.34 -4.88 16 12 C -0.11 -2.54 10.00 -39.62 -0.40 -2.94 16 13 C -0.03 -0.81 7.31 -38.62 -0.28 -1.09 16 14 F -0.16 -4.09 16.72 2.25 0.04 -4.05 16 15 C 0.10 2.58 5.57 -106.78 -0.60 1.98 16 16 C -0.45 -11.79 8.78 -37.79 -0.33 -12.12 16 17 H 0.08 2.18 7.74 -52.48 -0.41 1.77 16 18 C 0.08 1.85 5.16 -17.34 -0.09 1.77 16 19 N -0.79 -18.97 10.94 55.55 0.61 -18.36 16 20 Si 0.91 18.06 29.59 -169.99 -5.03 13.03 16 21 H -0.26 -5.18 7.11 56.52 0.40 -4.77 16 22 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 23 H -0.26 -5.22 7.11 56.52 0.40 -4.81 16 24 C -0.16 -3.94 8.59 -38.71 -0.33 -4.28 16 25 C -0.10 -1.12 2.71 -90.62 -0.25 -1.37 16 26 C -0.15 -1.63 8.79 37.16 0.33 -1.30 16 27 C -0.14 -1.46 7.72 37.16 0.29 -1.18 16 28 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.41 4.34 7.79 -40.82 -0.32 4.03 16 32 H 0.41 5.86 8.40 -40.82 -0.34 5.52 16 33 H 0.11 2.30 6.48 -52.48 -0.34 1.96 16 34 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 35 H 0.28 6.16 8.30 -40.82 -0.34 5.82 16 36 H 0.13 3.14 6.18 -52.49 -0.32 2.81 16 37 H 0.08 0.90 7.69 -51.93 -0.40 0.50 16 38 H 0.06 0.57 7.60 -51.93 -0.39 0.18 16 39 H 0.06 0.77 7.22 -51.93 -0.37 0.40 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.05 0.61 5.78 -51.92 -0.30 0.31 16 42 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.77 7.53 -51.93 -0.39 0.38 16 LS Contribution 356.89 15.07 5.38 5.38 Total: -1.00 -29.69 356.89 -7.23 -36.92 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: -5.65 Total: 12.54 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: -2.45 Total: -8.65 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.33 Total: -37.73 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: 0.15 Total: -17.43 kcal Atomic # 9 Polarization: -4.09 SS G_CDS: 0.04 Total: -4.05 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.03 Total: 13.03 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.69 -7.23 -36.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144368132.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.797 kcal (2) G-P(sol) polarization free energy of solvation -29.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds