Wall clock time and date at job start Tue Mar 31 2020 14:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21281 * 120.00202 * 2 1 4 4 N 1.34776 * 120.00040 * 179.97438 * 2 1 3 5 5 C 1.46500 * 119.99926 * 180.02562 * 4 2 1 6 6 H 1.08997 * 109.47390 * 325.00266 * 5 4 2 7 7 C 1.50702 * 109.47026 * 205.00156 * 5 4 2 8 8 O 1.21283 * 120.00378 * 0.02562 * 7 5 4 9 9 N 1.34786 * 119.99954 * 180.02562 * 7 5 4 10 10 C 1.39999 * 119.99954 * 174.89366 * 9 7 5 11 11 C 1.39368 * 119.91436 * 325.54306 * 10 9 7 12 12 C 1.38368 * 120.47583 * 179.72174 * 11 10 9 13 13 C 1.38007 * 120.28136 * 0.55606 * 12 11 10 14 14 F 1.35101 * 120.09214 * 179.70412 * 13 12 11 15 15 C 1.41012 * 119.81569 * 359.71707 * 13 12 11 16 16 C 1.41287 * 120.22864 * 179.97438 * 15 13 12 17 17 H 1.08003 * 120.00511 * 25.32628 * 16 15 13 18 18 C 1.39928 * 119.99925 * 205.32230 * 16 15 13 19 19 N 1.30855 * 119.99979 * 16.68730 * 18 16 15 20 20 Si 1.86803 * 120.00033 * 196.68975 * 18 16 15 21 21 H 1.48501 * 109.47283 * 59.99726 * 20 18 16 22 22 H 1.48502 * 109.46979 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46941 * 299.99687 * 20 18 16 24 24 C 1.38142 * 119.91117 * 145.81232 * 10 9 7 25 25 C 1.52998 * 109.47215 * 85.00484 * 5 4 2 26 26 C 1.53003 * 109.47386 * 59.99894 * 25 5 4 27 27 C 1.53004 * 109.46979 * 299.99652 * 25 5 4 28 28 H 1.08998 * 109.47251 * 269.99694 * 1 2 3 29 29 H 1.08997 * 109.47274 * 30.00304 * 1 2 3 30 30 H 1.09007 * 109.46916 * 150.00249 * 1 2 3 31 31 H 0.97002 * 120.00389 * 0.02562 * 4 2 1 32 32 H 0.96998 * 120.00015 * 354.88961 * 9 7 5 33 33 H 1.08005 * 119.76299 * 359.97438 * 11 10 9 34 34 H 1.07997 * 119.86054 * 180.25481 * 12 11 10 35 35 H 0.96994 * 119.99872 * 179.97438 * 19 18 16 36 36 H 1.07998 * 120.14491 * 359.97438 * 24 10 9 37 37 H 1.09000 * 109.47337 * 180.02562 * 25 5 4 38 38 H 1.09001 * 109.46652 * 300.00430 * 26 25 5 39 39 H 1.08996 * 109.46724 * 60.00087 * 26 25 5 40 40 H 1.09001 * 109.47365 * 180.02562 * 26 25 5 41 41 H 1.09010 * 109.46680 * 60.00234 * 27 25 5 42 42 H 1.08993 * 109.47147 * 179.97438 * 27 25 5 43 43 H 1.08993 * 109.47118 * 300.00689 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0011 6 1 4.0094 -0.3255 -0.5883 7 6 4.1484 -2.4550 -0.5989 8 8 3.3605 -3.2904 -0.9891 9 7 5.4736 -2.6784 -0.7020 10 6 5.9413 -3.9161 -1.1596 11 6 5.2454 -5.0818 -0.8445 12 6 5.6940 -6.3106 -1.2955 13 6 6.8438 -6.3960 -2.0539 14 9 7.2817 -7.5984 -2.4872 15 6 7.5606 -5.2249 -2.3751 16 6 8.7391 -5.3024 -3.1505 17 1 8.8864 -6.1304 -3.8281 18 6 9.7156 -4.3062 -3.0406 19 7 9.7092 -3.4941 -2.0146 20 14 11.0284 -4.1357 -4.3586 21 1 10.3829 -3.8624 -5.6678 22 1 11.9360 -3.0129 -4.0108 23 1 11.8095 -5.3957 -4.4452 24 6 7.0945 -3.9793 -1.9176 25 6 4.1553 -1.0412 1.4383 26 6 3.6450 -2.2227 2.2657 27 6 3.6451 0.2663 2.0475 28 1 -0.3634 -0.0001 1.0276 29 1 -0.3634 0.8899 -0.5139 30 1 -0.3633 -0.8901 -0.5138 31 1 1.6959 -2.0073 0.0005 32 1 6.1033 -1.9817 -0.4592 33 1 4.3472 -5.0251 -0.2475 34 1 5.1447 -7.2071 -1.0489 35 1 10.3863 -2.8038 -1.9382 36 1 7.6356 -3.0761 -2.1581 37 1 5.2453 -1.0407 1.4387 38 1 2.5550 -2.2227 2.2652 39 1 4.0086 -3.1541 1.8316 40 1 4.0076 -2.1328 3.2897 41 1 2.5550 0.2662 2.0470 42 1 4.0076 0.3558 3.0714 43 1 4.0086 1.1079 1.4580 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144368132.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:37 Heat of formation + Delta-G solvation = -128.776893 kcal Electronic energy + Delta-G solvation = -27439.410648 eV Core-core repulsion = 23397.564475 eV Total energy + Delta-G solvation = -4041.846173 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.19229 -41.95439 -40.50040 -38.96744 -37.09477 -36.12076 -35.15196 -34.12608 -31.72856 -30.98859 -30.13882 -28.11836 -27.72903 -27.17003 -23.59345 -23.12969 -22.27425 -21.48943 -20.62405 -19.40117 -19.00780 -18.01575 -17.98587 -17.34835 -17.11317 -16.90057 -16.62085 -16.35832 -15.96804 -15.72503 -15.29824 -15.13986 -14.70252 -14.56473 -14.44818 -14.19143 -13.95312 -13.55004 -13.37915 -13.30954 -13.29617 -13.15761 -12.97445 -12.80401 -12.77590 -12.47347 -12.36670 -12.08643 -12.06864 -11.81909 -11.54528 -11.21318 -11.02462 -10.91458 -10.71198 -10.10884 -9.54716 -8.89619 -8.60194 -6.45632 0.58141 0.86050 1.38218 1.42948 1.49352 1.57816 1.65503 1.85346 2.18690 2.44769 2.63376 3.42931 3.48127 3.68571 3.89692 3.96122 4.03250 4.15530 4.27725 4.41415 4.56078 4.59264 4.64732 4.69354 4.78095 4.90133 4.92576 4.95524 4.98634 4.99734 5.07114 5.12382 5.21114 5.28671 5.37331 5.42050 5.58936 5.71562 5.73717 5.95180 6.10119 6.40715 6.53126 6.58932 6.74286 6.79993 7.10475 7.23721 8.23143 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016729 B = 0.003291 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.349424 B = 8504.795334 C = 9294.114492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.510 3.490 3 O -0.580 6.580 4 N -0.705 5.705 5 C 0.140 3.860 6 H 0.110 0.890 7 C 0.513 3.487 8 O -0.548 6.548 9 N -0.652 5.652 10 C 0.154 3.846 11 C -0.207 4.207 12 C -0.107 4.107 13 C -0.068 4.068 14 F -0.170 7.170 15 C 0.073 3.927 16 C -0.492 4.492 17 H 0.071 0.929 18 C 0.044 3.956 19 N -0.808 5.808 20 Si 0.982 3.018 21 H -0.262 1.262 22 H -0.259 1.259 23 H -0.264 1.264 24 C -0.179 4.179 25 C -0.098 4.098 26 C -0.145 4.145 27 C -0.127 4.127 28 H 0.113 0.887 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.415 0.585 32 H 0.418 0.582 33 H 0.123 0.877 34 H 0.128 0.872 35 H 0.295 0.705 36 H 0.126 0.874 37 H 0.091 0.909 38 H 0.063 0.937 39 H 0.038 0.962 40 H 0.072 0.928 41 H 0.050 0.950 42 H 0.065 0.935 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.816 9.015 7.763 16.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.299 3.701 3 O -0.460 6.460 4 N -0.359 5.359 5 C 0.031 3.969 6 H 0.128 0.872 7 C 0.301 3.699 8 O -0.425 6.425 9 N -0.297 5.297 10 C 0.060 3.940 11 C -0.228 4.228 12 C -0.127 4.127 13 C -0.089 4.089 14 F -0.149 7.149 15 C 0.070 3.930 16 C -0.521 4.521 17 H 0.089 0.911 18 C -0.173 4.173 19 N -0.433 5.433 20 Si 0.802 3.198 21 H -0.186 1.186 22 H -0.183 1.183 23 H -0.189 1.189 24 C -0.201 4.201 25 C -0.118 4.118 26 C -0.202 4.202 27 C -0.184 4.184 28 H 0.132 0.868 29 H 0.115 0.885 30 H 0.117 0.883 31 H 0.253 0.747 32 H 0.256 0.744 33 H 0.141 0.859 34 H 0.146 0.854 35 H 0.106 0.894 36 H 0.143 0.857 37 H 0.109 0.891 38 H 0.082 0.918 39 H 0.057 0.943 40 H 0.091 0.909 41 H 0.069 0.931 42 H 0.084 0.916 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.847 9.357 7.626 16.914 hybrid contribution 1.012 -0.575 -0.666 1.341 sum -10.835 8.782 6.960 15.588 Atomic orbital electron populations 1.21905 0.88158 1.06030 1.06349 1.21460 0.92118 0.82421 0.74091 1.90717 1.71588 1.32457 1.51276 1.45846 1.05025 1.10193 1.74877 1.20770 0.83335 0.94503 0.98300 0.87207 1.21001 0.82052 0.89014 0.77841 1.90685 1.55531 1.47622 1.48707 1.43329 1.07438 1.14567 1.64380 1.17569 0.94734 0.84859 0.96816 1.20280 1.03208 0.90195 1.09121 1.20647 0.94863 0.98601 0.98569 1.18193 1.01035 0.80154 1.09506 1.91234 1.90279 1.44028 1.89393 1.17702 0.92946 0.90197 0.92184 1.19637 1.02011 1.08625 1.21780 0.91104 1.26635 1.00310 0.93167 0.97206 1.69785 1.32972 1.14805 1.25762 0.85251 0.76995 0.79166 0.78376 1.18631 1.18272 1.18883 1.20857 0.97640 0.97697 1.03927 1.21518 1.01297 0.97303 0.91663 1.21816 1.01795 0.96261 1.00360 1.21757 1.01012 0.95237 1.00432 0.86848 0.88477 0.88349 0.74732 0.74433 0.85907 0.85406 0.89441 0.85679 0.89074 0.91763 0.94255 0.90924 0.93111 0.91648 0.92902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.87 10.30 71.24 0.73 -1.14 16 2 C 0.51 10.34 6.29 87.66 0.55 10.89 16 3 O -0.58 -15.88 14.22 -3.03 -0.04 -15.92 16 4 N -0.71 -14.60 4.07 -446.10 -1.82 -16.42 16 5 C 0.14 3.32 2.41 44.25 0.11 3.43 16 6 H 0.11 2.73 7.58 -2.39 -0.02 2.71 16 7 C 0.51 15.73 5.69 87.66 0.50 16.23 16 8 O -0.55 -19.89 13.58 -3.04 -0.04 -19.93 16 9 N -0.65 -21.69 5.19 -303.61 -1.58 -23.26 16 10 C 0.15 6.61 6.25 38.09 0.24 6.85 16 11 C -0.21 -9.00 8.66 22.57 0.20 -8.80 16 12 C -0.11 -4.90 10.00 22.25 0.22 -4.68 16 13 C -0.07 -3.55 7.31 22.90 0.17 -3.38 16 14 F -0.17 -8.84 16.72 44.97 0.75 -8.09 16 15 C 0.07 3.95 5.57 -21.26 -0.12 3.83 16 16 C -0.49 -26.51 8.78 23.43 0.21 -26.30 16 17 H 0.07 3.85 7.74 -2.91 -0.02 3.83 16 18 C 0.04 2.12 5.16 85.25 0.44 2.56 16 19 N -0.81 -38.80 10.94 21.82 0.24 -38.56 16 20 Si 0.98 36.92 29.59 68.60 2.03 38.95 16 21 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 22 H -0.26 -8.91 7.11 99.48 0.71 -8.20 16 23 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 24 C -0.18 -8.77 8.59 22.83 0.20 -8.58 16 25 C -0.10 -1.98 2.71 -10.79 -0.03 -2.01 16 26 C -0.14 -2.87 8.79 71.98 0.63 -2.24 16 27 C -0.13 -2.49 7.72 71.98 0.56 -1.94 16 28 H 0.11 0.85 8.14 -2.39 -0.02 0.84 16 29 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.41 7.98 7.79 -92.71 -0.72 7.26 16 32 H 0.42 11.73 8.40 -92.71 -0.78 10.95 16 33 H 0.12 5.01 6.48 -2.91 -0.02 4.99 16 34 H 0.13 5.09 8.06 -2.91 -0.02 5.07 16 35 H 0.29 12.59 8.30 -92.71 -0.77 11.82 16 36 H 0.13 6.14 6.18 -2.91 -0.02 6.12 16 37 H 0.09 1.74 7.69 -2.39 -0.02 1.73 16 38 H 0.06 1.16 7.60 -2.39 -0.02 1.14 16 39 H 0.04 0.95 7.22 -2.39 -0.02 0.93 16 40 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.05 1.03 5.78 -2.38 -0.01 1.02 16 42 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.05 1.18 7.53 -2.39 -0.02 1.16 16 Total: -1.00 -64.99 356.89 3.71 -61.29 By element: Atomic # 1 Polarization: 37.67 SS G_CDS: -0.43 Total: 37.23 kcal Atomic # 6 Polarization: -19.88 SS G_CDS: 4.60 Total: -15.29 kcal Atomic # 7 Polarization: -75.09 SS G_CDS: -3.15 Total: -78.25 kcal Atomic # 8 Polarization: -35.77 SS G_CDS: -0.08 Total: -35.85 kcal Atomic # 9 Polarization: -8.84 SS G_CDS: 0.75 Total: -8.09 kcal Atomic # 14 Polarization: 36.92 SS G_CDS: 2.03 Total: 38.95 kcal Total: -64.99 3.71 -61.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144368132.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.489 kcal (2) G-P(sol) polarization free energy of solvation -64.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds