Wall clock time and date at job start Tue Mar 31 2020 12:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50699 * 109.46781 * 2 1 4 4 C 1.34172 * 124.95053 * 95.10701 * 3 2 1 5 5 C 1.46436 * 106.17452 * 180.02562 * 4 3 2 6 6 C 1.40647 * 105.48437 * 0.02562 * 5 4 3 7 7 C 1.39320 * 118.06615 * 179.97438 * 6 5 4 8 8 C 1.37828 * 119.09888 * 359.97438 * 7 6 5 9 9 N 1.32195 * 121.63655 * 359.72024 * 8 7 6 10 10 C 1.32513 * 121.98250 * 0.57371 * 9 8 7 11 11 N 1.38497 * 120.03898 * 179.70217 * 10 9 8 12 12 C 1.36885 * 119.99933 * 185.78256 * 11 10 9 13 13 H 1.07999 * 119.99962 * 43.03666 * 12 11 10 14 14 C 1.38781 * 120.00306 * 223.03300 * 12 11 10 15 15 N 1.31573 * 120.00006 * 208.97136 * 14 12 11 16 16 Si 1.86799 * 119.99579 * 28.97077 * 14 12 11 17 17 H 1.48498 * 109.47049 * 90.82641 * 16 14 12 18 18 H 1.48504 * 109.47029 * 210.82436 * 16 14 12 19 19 H 1.48502 * 109.47060 * 330.82458 * 16 14 12 20 20 C 1.46503 * 119.99903 * 5.79139 * 11 10 9 21 21 C 1.50702 * 109.46843 * 272.80603 * 20 11 10 22 22 C 1.38230 * 120.00410 * 269.72969 * 21 20 11 23 23 C 1.38232 * 120.00203 * 179.76962 * 22 21 20 24 24 C 1.38234 * 119.99934 * 0.50034 * 23 22 21 25 25 C 1.38231 * 119.99805 * 359.75176 * 24 23 22 26 26 C 1.38232 * 120.00132 * 359.97438 * 25 24 23 27 27 O 1.34382 * 107.38169 * 359.97438 * 6 5 4 28 28 H 1.09005 * 109.47342 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46984 * 299.99643 * 1 2 3 30 30 H 1.08998 * 109.47500 * 59.99867 * 1 2 3 31 31 H 1.09003 * 109.46984 * 240.00357 * 2 1 3 32 32 H 1.08998 * 109.47500 * 120.00132 * 2 1 3 33 33 H 1.07999 * 126.90843 * 359.97438 * 4 3 2 34 34 H 1.07997 * 120.45031 * 179.97438 * 7 6 5 35 35 H 1.08006 * 119.18158 * 180.02562 * 8 7 6 36 36 H 0.97008 * 119.99757 * 185.01302 * 15 14 12 37 37 H 1.09000 * 109.47158 * 32.80514 * 20 11 10 38 38 H 1.08998 * 109.47338 * 152.80954 * 20 11 10 39 39 H 1.08000 * 119.99580 * 359.97438 * 22 21 20 40 40 H 1.08008 * 120.00101 * 180.22956 * 23 22 21 41 41 H 1.08000 * 120.00023 * 179.72779 * 24 23 22 42 42 H 1.08006 * 119.99815 * 179.97438 * 25 24 23 43 43 H 1.08008 * 119.99762 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.3807 2.1129 1.0954 5 6 2.8026 3.4342 0.6260 6 6 2.6570 3.4001 -0.7725 7 6 2.9914 4.5437 -1.4945 8 6 3.4473 5.6544 -0.8175 9 7 3.5694 5.6624 0.4987 10 6 3.2722 4.6033 1.2377 11 7 3.4211 4.6541 2.6137 12 6 3.2282 3.5263 3.3651 13 1 3.6298 2.5806 3.0324 14 6 2.5167 3.5982 4.5544 15 7 2.7804 2.7564 5.5307 16 14 1.1846 4.8900 4.7692 17 1 -0.1204 4.3329 4.3313 18 1 1.1008 5.2816 6.1992 19 1 1.5145 6.0825 3.9479 20 6 3.7850 5.9150 3.2650 21 6 5.2855 6.0529 3.2896 22 6 6.0070 5.5643 4.3627 23 6 7.3837 5.6865 4.3830 24 6 8.0381 6.3067 3.3351 25 6 7.3161 6.8000 2.2645 26 6 5.9399 6.6727 2.2415 27 8 2.1957 2.1807 -1.0984 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.3544 1.7655 2.1176 34 1 2.8948 4.5597 -2.5700 35 1 3.7065 6.5418 -1.3759 36 1 2.2355 2.7585 6.3333 37 1 3.3526 6.7481 2.7109 38 1 3.4029 5.9201 4.2858 39 1 5.4953 5.0840 5.1836 40 1 7.9478 5.3014 5.2197 41 1 9.1134 6.4061 3.3531 42 1 7.8274 7.2849 1.4460 43 1 5.3758 7.0585 1.4052 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167000868.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:58 Heat of formation + Delta-G solvation = 79.277717 kcal Electronic energy + Delta-G solvation = -27148.686516 eV Core-core repulsion = 23546.631493 eV Total energy + Delta-G solvation = -3602.055023 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.73040 -39.08070 -38.10101 -36.04214 -33.80297 -32.55207 -31.86884 -30.86757 -30.33691 -29.79263 -27.88663 -26.09284 -24.69957 -23.28152 -22.22347 -21.93845 -21.05481 -20.93728 -19.83678 -18.00844 -16.64078 -16.26649 -15.90422 -15.60430 -15.47139 -15.32156 -14.69637 -14.44134 -14.23985 -14.00934 -13.69908 -13.53680 -13.05068 -12.86533 -12.76091 -12.62731 -12.45078 -12.17876 -11.98917 -11.98026 -11.52886 -11.28356 -11.20845 -11.05647 -10.94106 -10.55005 -10.45723 -10.30912 -10.12292 -9.52361 -9.01811 -8.75940 -8.62035 -8.36657 -8.19818 -8.15391 -6.74788 -6.62970 -4.14661 1.77957 1.88987 1.96178 2.32030 3.02101 3.13108 3.14711 3.20855 3.38694 3.97858 4.09297 4.51807 4.54368 4.86868 5.03638 5.28055 5.37314 5.39096 5.39923 5.48381 5.50226 5.67851 5.72095 5.72805 5.89738 5.91434 5.95591 6.05426 6.09528 6.11444 6.18142 6.28966 6.34912 6.39411 6.54120 6.59438 6.63188 6.66134 6.89101 6.99354 7.00267 7.15547 7.27727 7.30916 7.38686 7.55757 7.87453 8.01639 8.32162 8.74047 8.97060 9.44000 10.34387 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.011034 B = 0.005621 C = 0.004424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2536.975830 B = 4980.168755 C = 6328.299287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.034 4.034 3 C -0.051 4.051 4 C -0.128 4.128 5 C -0.230 4.230 6 C 0.124 3.876 7 C -0.284 4.284 8 C 0.174 3.826 9 N -0.585 5.585 10 C 0.429 3.571 11 N -0.421 5.421 12 C -0.321 4.321 13 H 0.108 0.892 14 C 0.075 3.925 15 N -0.836 5.836 16 Si 0.854 3.146 17 H -0.273 1.273 18 H -0.280 1.280 19 H -0.253 1.253 20 C 0.156 3.844 21 C -0.087 4.087 22 C -0.092 4.092 23 C -0.132 4.132 24 C -0.129 4.129 25 C -0.136 4.136 26 C -0.094 4.094 27 O -0.197 6.197 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.168 0.832 34 H 0.118 0.882 35 H 0.148 0.852 36 H 0.278 0.722 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.124 0.876 40 H 0.114 0.886 41 H 0.111 0.889 42 H 0.113 0.887 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.571 1.959 -5.688 6.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.071 4.071 3 C -0.098 4.098 4 C -0.148 4.148 5 C -0.238 4.238 6 C 0.069 3.931 7 C -0.311 4.311 8 C 0.017 3.983 9 N -0.309 5.309 10 C 0.187 3.813 11 N -0.111 5.111 12 C -0.448 4.448 13 H 0.125 0.875 14 C -0.135 4.135 15 N -0.468 5.468 16 Si 0.678 3.322 17 H -0.199 1.199 18 H -0.206 1.206 19 H -0.177 1.177 20 C 0.033 3.967 21 C -0.088 4.088 22 C -0.111 4.111 23 C -0.150 4.150 24 C -0.147 4.147 25 C -0.154 4.154 26 C -0.113 4.113 27 O -0.098 6.098 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.109 0.891 33 H 0.185 0.815 34 H 0.136 0.864 35 H 0.165 0.835 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.142 0.858 40 H 0.132 0.868 41 H 0.129 0.871 42 H 0.131 0.869 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.814 2.522 -4.951 5.845 hybrid contribution -0.934 -0.297 -0.098 0.985 sum 0.880 2.226 -5.048 5.587 Atomic orbital electron populations 1.21800 0.94764 1.01531 1.02594 1.19942 0.95831 0.87982 1.03322 1.22051 1.09035 0.94690 0.84017 1.22648 1.01116 0.91774 0.99305 1.19802 1.14172 0.96824 0.93017 1.19511 0.95448 0.84974 0.93168 1.20100 1.19271 0.92124 0.99600 1.21831 0.91875 0.95472 0.89124 1.67267 1.28669 1.28150 1.06805 1.18169 0.89605 0.87411 0.86066 1.42468 1.58928 1.08948 1.00755 1.19101 1.35127 0.88776 1.01800 0.87457 1.25355 0.96720 0.97125 0.94269 1.69977 1.34829 1.37574 1.04426 0.87284 0.83689 0.83232 0.78003 1.19921 1.20568 1.17726 1.20725 0.90105 0.87952 0.97942 1.20331 0.96662 0.97466 0.94361 1.21172 0.93809 0.97524 0.98562 1.21046 0.94646 1.00556 0.98761 1.21016 0.99068 0.99819 0.94842 1.21056 0.94460 1.01582 0.98312 1.21299 0.94058 0.97889 0.98006 1.83723 1.69757 1.21316 1.34990 0.92277 0.92091 0.92628 0.90909 0.89140 0.81507 0.86387 0.83469 0.91169 0.90316 0.90826 0.85824 0.86787 0.87074 0.86923 0.84945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.89 37.16 0.37 -1.53 16 2 C -0.03 -0.47 6.44 -27.88 -0.18 -0.65 16 3 C -0.05 -0.96 6.49 -35.74 -0.23 -1.20 16 4 C -0.13 -2.74 9.35 -37.72 -0.35 -3.09 16 5 C -0.23 -5.22 5.98 -105.01 -0.63 -5.85 16 6 C 0.12 2.59 7.49 -38.27 -0.29 2.31 16 7 C -0.28 -5.21 10.13 -39.33 -0.40 -5.61 16 8 C 0.17 3.10 11.13 -17.55 -0.20 2.90 16 9 N -0.58 -12.04 7.74 -12.31 -0.10 -12.14 16 10 C 0.43 9.81 7.34 -155.07 -1.14 8.67 16 11 N -0.42 -9.75 2.11 -116.19 -0.25 -9.99 16 12 C -0.32 -7.92 7.54 -15.09 -0.11 -8.04 16 13 H 0.11 2.87 6.05 -52.49 -0.32 2.55 16 14 C 0.08 1.85 5.09 -17.46 -0.09 1.76 16 15 N -0.84 -21.29 13.96 55.49 0.77 -20.52 16 16 Si 0.85 19.08 26.48 -169.99 -4.50 14.57 16 17 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 18 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 19 H -0.25 -5.56 5.68 56.52 0.32 -5.23 16 20 C 0.16 3.29 3.67 -5.19 -0.02 3.27 16 21 C -0.09 -1.71 5.45 -104.62 -0.57 -2.28 16 22 C -0.09 -1.76 9.70 -39.59 -0.38 -2.14 16 23 C -0.13 -2.19 10.05 -39.58 -0.40 -2.59 16 24 C -0.13 -1.99 10.05 -39.59 -0.40 -2.39 16 25 C -0.14 -2.17 10.05 -39.59 -0.40 -2.57 16 26 C -0.09 -1.70 9.34 -39.58 -0.37 -2.06 16 27 O -0.20 -3.96 10.57 4.79 0.05 -3.91 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.09 1.18 8.13 -51.93 -0.42 0.76 16 33 H 0.17 3.68 5.95 -52.49 -0.31 3.37 16 34 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 35 H 0.15 2.01 8.06 -52.48 -0.42 1.58 16 36 H 0.28 6.64 8.32 -40.82 -0.34 6.30 16 37 H 0.08 1.62 7.51 -51.93 -0.39 1.23 16 38 H 0.07 1.57 4.75 -51.93 -0.25 1.32 16 39 H 0.12 2.46 8.06 -52.49 -0.42 2.04 16 40 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 41 H 0.11 1.40 8.06 -52.49 -0.42 0.97 16 42 H 0.11 1.50 8.06 -52.48 -0.42 1.08 16 43 H 0.13 2.36 6.92 -52.48 -0.36 1.99 16 LS Contribution 354.47 15.07 5.34 5.34 Total: -1.00 -27.46 354.47 -9.95 -37.42 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -5.50 Total: 10.32 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: -5.78 Total: -21.09 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: 0.43 Total: -42.65 kcal Atomic # 8 Polarization: -3.96 SS G_CDS: 0.05 Total: -3.91 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -4.50 Total: 14.57 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -27.46 -9.95 -37.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167000868.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.694 kcal (2) G-P(sol) polarization free energy of solvation -27.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds