Wall clock time and date at job start Tue Mar 31 2020 12:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50699 * 109.46781 * 2 1 4 4 C 1.34172 * 124.95053 * 95.10701 * 3 2 1 5 5 C 1.46436 * 106.17452 * 180.02562 * 4 3 2 6 6 C 1.40647 * 105.48437 * 0.02562 * 5 4 3 7 7 C 1.39320 * 118.06615 * 179.97438 * 6 5 4 8 8 C 1.37828 * 119.09888 * 359.97438 * 7 6 5 9 9 N 1.32195 * 121.63655 * 359.72024 * 8 7 6 10 10 C 1.32513 * 121.98250 * 0.57371 * 9 8 7 11 11 N 1.38497 * 120.03898 * 179.70217 * 10 9 8 12 12 C 1.36885 * 119.99933 * 185.78256 * 11 10 9 13 13 H 1.07999 * 119.99962 * 43.03666 * 12 11 10 14 14 C 1.38781 * 120.00306 * 223.03300 * 12 11 10 15 15 N 1.31573 * 120.00006 * 208.97136 * 14 12 11 16 16 Si 1.86799 * 119.99579 * 28.97077 * 14 12 11 17 17 H 1.48498 * 109.47049 * 90.82641 * 16 14 12 18 18 H 1.48504 * 109.47029 * 210.82436 * 16 14 12 19 19 H 1.48502 * 109.47060 * 330.82458 * 16 14 12 20 20 C 1.46503 * 119.99903 * 5.79139 * 11 10 9 21 21 C 1.50702 * 109.46843 * 272.80603 * 20 11 10 22 22 C 1.38230 * 120.00410 * 269.72969 * 21 20 11 23 23 C 1.38232 * 120.00203 * 179.76962 * 22 21 20 24 24 C 1.38234 * 119.99934 * 0.50034 * 23 22 21 25 25 C 1.38231 * 119.99805 * 359.75176 * 24 23 22 26 26 C 1.38232 * 120.00132 * 359.97438 * 25 24 23 27 27 O 1.34382 * 107.38169 * 359.97438 * 6 5 4 28 28 H 1.09005 * 109.47342 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46984 * 299.99643 * 1 2 3 30 30 H 1.08998 * 109.47500 * 59.99867 * 1 2 3 31 31 H 1.09003 * 109.46984 * 240.00357 * 2 1 3 32 32 H 1.08998 * 109.47500 * 120.00132 * 2 1 3 33 33 H 1.07999 * 126.90843 * 359.97438 * 4 3 2 34 34 H 1.07997 * 120.45031 * 179.97438 * 7 6 5 35 35 H 1.08006 * 119.18158 * 180.02562 * 8 7 6 36 36 H 0.97008 * 119.99757 * 185.01302 * 15 14 12 37 37 H 1.09000 * 109.47158 * 32.80514 * 20 11 10 38 38 H 1.08998 * 109.47338 * 152.80954 * 20 11 10 39 39 H 1.08000 * 119.99580 * 359.97438 * 22 21 20 40 40 H 1.08008 * 120.00101 * 180.22956 * 23 22 21 41 41 H 1.08000 * 120.00023 * 179.72779 * 24 23 22 42 42 H 1.08006 * 119.99815 * 179.97438 * 25 24 23 43 43 H 1.08008 * 119.99762 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.3807 2.1129 1.0954 5 6 2.8026 3.4342 0.6260 6 6 2.6570 3.4001 -0.7725 7 6 2.9914 4.5437 -1.4945 8 6 3.4473 5.6544 -0.8175 9 7 3.5694 5.6624 0.4987 10 6 3.2722 4.6033 1.2377 11 7 3.4211 4.6541 2.6137 12 6 3.2282 3.5263 3.3651 13 1 3.6298 2.5806 3.0324 14 6 2.5167 3.5982 4.5544 15 7 2.7804 2.7564 5.5307 16 14 1.1846 4.8900 4.7692 17 1 -0.1204 4.3329 4.3313 18 1 1.1008 5.2816 6.1992 19 1 1.5145 6.0825 3.9479 20 6 3.7850 5.9150 3.2650 21 6 5.2855 6.0529 3.2896 22 6 6.0070 5.5643 4.3627 23 6 7.3837 5.6865 4.3830 24 6 8.0381 6.3067 3.3351 25 6 7.3161 6.8000 2.2645 26 6 5.9399 6.6727 2.2415 27 8 2.1957 2.1807 -1.0984 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.3544 1.7655 2.1176 34 1 2.8948 4.5597 -2.5700 35 1 3.7065 6.5418 -1.3759 36 1 2.2355 2.7585 6.3333 37 1 3.3526 6.7481 2.7109 38 1 3.4029 5.9201 4.2858 39 1 5.4953 5.0840 5.1836 40 1 7.9478 5.3014 5.2197 41 1 9.1134 6.4061 3.3531 42 1 7.8274 7.2849 1.4460 43 1 5.3758 7.0585 1.4052 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167000868.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:57 Heat of formation + Delta-G solvation = 68.025748 kcal Electronic energy + Delta-G solvation = -27149.174438 eV Core-core repulsion = 23546.631493 eV Total energy + Delta-G solvation = -3602.542945 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.31412 -40.58766 -39.57244 -37.65842 -35.08908 -34.35763 -33.39078 -32.37007 -31.68279 -31.31755 -29.40182 -27.70985 -26.27289 -24.67960 -23.79159 -23.30992 -22.54637 -22.39104 -21.38819 -19.74533 -18.18278 -17.76295 -17.46066 -17.20896 -17.04583 -16.95636 -16.11322 -15.92729 -15.65004 -15.46116 -15.16941 -14.95183 -14.46792 -14.43956 -14.19753 -14.16289 -13.93932 -13.76993 -13.39292 -13.29927 -13.09450 -12.90778 -12.58678 -12.52050 -12.34188 -11.98421 -11.93757 -11.82904 -11.69349 -11.19772 -10.81298 -10.33033 -10.28333 -9.78342 -9.70440 -9.58167 -8.63648 -8.26697 -6.03164 0.26173 0.50219 0.61166 0.68277 1.19464 1.30183 1.36097 1.56876 1.87217 2.15109 2.48576 2.75109 3.08431 3.22090 3.64672 3.90710 3.98547 4.05301 4.12899 4.21565 4.25103 4.32679 4.36293 4.38690 4.42750 4.48136 4.58880 4.70090 4.75921 4.82532 4.85074 4.95712 4.97254 5.07511 5.11141 5.19359 5.28170 5.29923 5.37776 5.53061 5.65901 5.67046 5.68647 5.71871 5.89518 6.03829 6.22951 6.32452 6.58466 7.03894 7.16678 7.71798 8.50349 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.011034 B = 0.005621 C = 0.004424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2536.975830 B = 4980.168755 C = 6328.299287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.035 4.035 3 C -0.027 4.027 4 C -0.167 4.167 5 C -0.264 4.264 6 C 0.105 3.895 7 C -0.269 4.269 8 C 0.171 3.829 9 N -0.585 5.585 10 C 0.413 3.587 11 N -0.439 5.439 12 C -0.312 4.312 13 H 0.074 0.926 14 C 0.047 3.953 15 N -0.875 5.875 16 Si 0.898 3.102 17 H -0.283 1.283 18 H -0.273 1.273 19 H -0.249 1.249 20 C 0.161 3.839 21 C -0.107 4.107 22 C -0.116 4.116 23 C -0.135 4.135 24 C -0.122 4.122 25 C -0.132 4.132 26 C -0.104 4.104 27 O -0.198 6.198 28 H 0.091 0.909 29 H 0.043 0.957 30 H 0.054 0.946 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.147 0.853 34 H 0.154 0.846 35 H 0.198 0.802 36 H 0.280 0.720 37 H 0.079 0.921 38 H 0.060 0.940 39 H 0.100 0.900 40 H 0.135 0.865 41 H 0.150 0.850 42 H 0.146 0.854 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.588 2.961 -8.528 9.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.072 4.072 3 C -0.073 4.073 4 C -0.187 4.187 5 C -0.271 4.271 6 C 0.051 3.949 7 C -0.295 4.295 8 C 0.015 3.985 9 N -0.309 5.309 10 C 0.172 3.828 11 N -0.132 5.132 12 C -0.440 4.440 13 H 0.092 0.908 14 C -0.160 4.160 15 N -0.510 5.510 16 Si 0.722 3.278 17 H -0.210 1.210 18 H -0.198 1.198 19 H -0.173 1.173 20 C 0.039 3.961 21 C -0.109 4.109 22 C -0.135 4.135 23 C -0.153 4.153 24 C -0.140 4.140 25 C -0.150 4.150 26 C -0.122 4.122 27 O -0.099 6.099 28 H 0.110 0.890 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.165 0.835 34 H 0.172 0.828 35 H 0.214 0.786 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.079 0.921 39 H 0.118 0.882 40 H 0.153 0.847 41 H 0.167 0.833 42 H 0.164 0.836 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.830 3.546 -7.832 9.051 hybrid contribution -1.179 -0.631 0.520 1.435 sum 1.651 2.914 -7.312 8.043 Atomic orbital electron populations 1.21768 0.93318 1.03412 1.01692 1.20218 0.96933 0.85079 1.04998 1.22812 1.05770 0.95854 0.82894 1.22533 1.04243 0.92598 0.99369 1.20179 1.15112 0.97403 0.94442 1.19996 0.96098 0.86011 0.92817 1.20641 1.16648 0.90813 1.01379 1.22691 0.90554 0.97017 0.88267 1.67347 1.28131 1.27296 1.08147 1.18448 0.89950 0.88196 0.86205 1.42413 1.60939 1.08901 1.00967 1.18728 1.34815 0.88501 1.02003 0.90819 1.25696 0.97778 0.98410 0.94072 1.70018 1.36133 1.39691 1.05134 0.86587 0.81248 0.81781 0.78179 1.20968 1.19814 1.17300 1.20630 0.91529 0.87058 0.96916 1.20292 0.95877 0.99115 0.95565 1.21134 0.95268 0.98833 0.98273 1.21330 0.93582 1.00277 1.00075 1.21447 1.00952 0.97978 0.93627 1.21450 0.93569 1.00657 0.99279 1.21372 0.95285 0.98110 0.97452 1.83750 1.69757 1.21215 1.35137 0.89029 0.93797 0.92709 0.88378 0.88259 0.83518 0.82790 0.78554 0.90968 0.90253 0.92149 0.88180 0.84694 0.83276 0.83608 0.84870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 9.89 71.98 0.71 -2.73 16 2 C -0.04 -0.95 6.44 29.85 0.19 -0.76 16 3 C -0.03 -1.00 6.49 24.76 0.16 -0.84 16 4 C -0.17 -7.48 9.35 23.48 0.22 -7.26 16 5 C -0.26 -12.25 5.98 -20.11 -0.12 -12.37 16 6 C 0.11 4.32 7.49 23.12 0.17 4.49 16 7 C -0.27 -9.06 10.13 22.43 0.23 -8.84 16 8 C 0.17 5.55 11.13 84.54 0.94 6.49 16 9 N -0.59 -23.52 7.74 -192.85 -1.49 -25.01 16 10 C 0.41 19.26 7.34 133.43 0.98 20.24 16 11 N -0.44 -21.29 2.11 -521.51 -1.10 -22.39 16 12 C -0.31 -16.53 7.54 84.03 0.63 -15.90 16 13 H 0.07 4.31 6.05 -2.91 -0.02 4.30 16 14 C 0.05 2.44 5.09 84.86 0.43 2.87 16 15 N -0.88 -47.46 13.96 21.64 0.30 -47.16 16 16 Si 0.90 41.30 26.48 68.60 1.82 43.12 16 17 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 18 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 19 H -0.25 -11.16 5.68 99.48 0.57 -10.59 16 20 C 0.16 7.10 3.67 85.63 0.31 7.41 16 21 C -0.11 -4.32 5.45 -19.87 -0.11 -4.43 16 22 C -0.12 -4.60 9.70 22.27 0.22 -4.38 16 23 C -0.13 -4.35 10.05 22.27 0.22 -4.13 16 24 C -0.12 -3.40 10.05 22.27 0.22 -3.17 16 25 C -0.13 -3.83 10.05 22.27 0.22 -3.60 16 26 C -0.10 -3.64 9.34 22.27 0.21 -3.43 16 27 O -0.20 -7.74 10.57 -5.79 -0.06 -7.80 16 28 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 29 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.10 2.52 8.13 -2.39 -0.02 2.50 16 33 H 0.15 7.09 5.95 -2.91 -0.02 7.07 16 34 H 0.15 4.06 8.06 -2.91 -0.02 4.04 16 35 H 0.20 4.36 8.06 -2.91 -0.02 4.34 16 36 H 0.28 14.19 8.32 -92.70 -0.77 13.42 16 37 H 0.08 3.35 7.51 -2.39 -0.02 3.33 16 38 H 0.06 2.73 4.75 -2.39 -0.01 2.72 16 39 H 0.10 4.32 8.06 -2.91 -0.02 4.30 16 40 H 0.14 3.68 8.06 -2.91 -0.02 3.66 16 41 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 42 H 0.15 3.24 8.06 -2.91 -0.02 3.22 16 43 H 0.13 4.56 6.92 -2.91 -0.02 4.54 16 Total: -1.00 -63.68 354.47 6.20 -57.48 By element: Atomic # 1 Polarization: 31.20 SS G_CDS: 0.89 Total: 32.09 kcal Atomic # 6 Polarization: -36.18 SS G_CDS: 5.85 Total: -30.32 kcal Atomic # 7 Polarization: -92.27 SS G_CDS: -2.29 Total: -94.56 kcal Atomic # 8 Polarization: -7.74 SS G_CDS: -0.06 Total: -7.80 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 1.82 Total: 43.12 kcal Total: -63.68 6.20 -57.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167000868.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.501 kcal (2) G-P(sol) polarization free energy of solvation -63.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds