Wall clock time and date at job start Tue Mar 31 2020 13:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50698 * 109.47445 * 2 1 4 4 C 1.37473 * 123.35028 * 264.70735 * 3 2 1 5 5 C 1.33818 * 115.10242 * 179.76632 * 4 3 2 6 6 S 1.70624 * 110.95081 * 0.48563 * 5 4 3 7 7 C 1.36649 * 123.35387 * 84.99918 * 3 2 1 8 8 C 1.46583 * 125.45629 * 359.96716 * 7 3 2 9 9 O 1.21705 * 120.00012 * 0.02562 * 8 7 3 10 10 N 1.34772 * 119.99791 * 179.97438 * 8 7 3 11 11 C 1.46510 * 119.99592 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.46770 * 180.02562 * 11 10 8 13 13 C 1.53001 * 109.47231 * 175.45887 * 12 11 10 14 14 C 1.53005 * 115.54940 * 279.32763 * 13 12 11 15 15 N 1.46504 * 109.46960 * 294.95091 * 14 13 12 16 16 C 1.36933 * 120.00114 * 174.37351 * 15 14 13 17 17 H 1.08003 * 119.99693 * 359.97438 * 16 15 14 18 18 C 1.38813 * 120.00191 * 179.97438 * 16 15 14 19 19 N 1.31614 * 119.99632 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00040 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47110 * 59.99959 * 20 18 16 22 22 H 1.48499 * 109.47189 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47051 * 300.00047 * 20 18 16 24 24 C 1.52998 * 117.50114 * 133.61491 * 13 12 11 25 25 C 1.52998 * 117.49843 * 64.99050 * 13 12 11 26 26 H 1.08998 * 109.47396 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46892 * 59.99709 * 1 2 3 28 28 H 1.09001 * 109.46747 * 300.00448 * 1 2 3 29 29 H 1.09008 * 109.46957 * 120.00210 * 2 1 3 30 30 H 1.08996 * 109.47026 * 239.99953 * 2 1 3 31 31 H 1.07996 * 122.45071 * 359.97438 * 4 3 2 32 32 H 1.07996 * 124.52425 * 180.19604 * 5 4 3 33 33 H 0.96990 * 120.00524 * 0.02562 * 10 8 7 34 34 H 1.08997 * 109.47449 * 299.99807 * 11 10 8 35 35 H 1.08998 * 109.46873 * 60.00588 * 11 10 8 36 36 H 1.09002 * 109.47298 * 295.45779 * 12 11 10 37 37 H 1.09003 * 109.47235 * 55.45872 * 12 11 10 38 38 H 1.09008 * 109.46974 * 54.94549 * 14 13 12 39 39 H 1.08993 * 109.47524 * 174.94876 * 14 13 12 40 40 H 0.97006 * 119.99632 * 354.36585 * 15 14 13 41 41 H 0.97005 * 119.99782 * 179.97438 * 19 18 16 42 42 H 1.08996 * 117.49901 * 0.02562 * 24 13 12 43 43 H 1.09003 * 117.49464 * 145.02438 * 24 13 12 44 44 H 1.09002 * 117.50082 * 214.97951 * 25 13 12 45 45 H 1.09001 * 117.49642 * 0.02562 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3842 2.0980 -1.1435 5 6 2.8044 3.3541 -0.9528 6 16 2.7927 3.7562 0.7054 7 6 2.1891 2.1623 1.1371 8 6 1.8995 1.7027 2.4985 9 8 1.4830 0.5743 2.6842 10 7 2.0953 2.5294 3.5447 11 6 1.8053 2.0702 4.9055 12 6 2.1107 3.1933 5.8986 13 6 1.7019 2.7545 7.3062 14 6 0.2125 2.8843 7.6313 15 7 -0.1686 4.2988 7.6191 16 6 -1.4821 4.6554 7.7697 17 1 -2.2372 3.8938 7.8971 18 6 -1.8431 5.9957 7.7586 19 7 -0.9228 6.9238 7.6039 20 14 -3.6350 6.4821 7.9633 21 1 -4.1362 5.9863 9.2703 22 1 -3.7549 7.9614 7.9155 23 1 -4.4384 5.8851 6.8663 24 6 2.6975 3.0036 8.4409 25 6 2.4613 1.5813 7.9289 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 2.3227 1.6502 -2.1243 32 1 3.1143 4.0224 -1.7425 33 1 2.4276 3.4285 3.3968 34 1 0.7530 1.7960 4.9799 35 1 2.4240 1.2029 5.1358 36 1 3.1783 3.4126 5.8821 37 1 1.5519 4.0867 5.6199 38 1 -0.3707 2.3444 6.8852 39 1 0.0180 2.4642 8.6181 40 1 0.5096 4.9828 7.5044 41 1 -1.1751 7.8604 7.5958 42 1 3.6436 3.4805 8.1847 43 1 2.2914 3.2602 9.4194 44 1 1.8999 0.9022 8.5706 45 1 3.2524 1.1223 7.3359 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168291496.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:44 Heat of formation + Delta-G solvation = 16.863633 kcal Electronic energy + Delta-G solvation = -24415.414338 eV Core-core repulsion = 20946.096788 eV Total energy + Delta-G solvation = -3469.317550 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.98911 -38.51583 -37.86696 -34.83988 -33.90039 -32.85805 -30.83656 -30.64472 -28.92362 -26.04250 -25.48337 -23.47567 -22.74108 -22.52758 -21.87710 -21.18849 -19.33612 -18.40929 -18.11113 -17.03875 -16.09810 -15.91080 -15.60606 -15.09818 -15.01754 -14.42778 -14.37857 -14.20085 -13.86639 -13.57946 -13.40127 -13.12353 -12.99434 -12.66793 -12.51703 -12.22695 -12.05523 -11.90966 -11.62214 -11.46179 -11.19468 -11.09200 -10.95725 -10.84798 -10.81095 -10.58583 -10.16631 -9.90151 -9.87374 -9.63607 -9.31657 -9.18214 -8.88409 -8.82235 -8.67189 -6.88717 -5.74598 -3.02329 0.32870 1.28135 1.67226 2.18808 3.11995 3.16879 3.45657 3.49891 3.50843 4.06758 4.59380 4.62914 4.69906 4.94666 5.00271 5.02249 5.11267 5.16647 5.22280 5.32576 5.36236 5.52297 5.54107 5.59698 5.64732 5.68373 5.76590 5.81876 5.92163 5.92664 6.09689 6.15370 6.18946 6.23852 6.26373 6.34607 6.44119 6.45190 6.47421 6.57253 6.77499 6.85896 7.45150 7.71851 8.15676 8.44634 9.56209 10.14543 10.50441 11.48204 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.011443 B = 0.003050 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.242772 B = 9177.014149 C =10101.717500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.071 4.071 3 C -0.021 4.021 4 C -0.147 4.147 5 C -0.230 4.230 6 S 0.199 5.801 7 C -0.268 4.268 8 C 0.589 3.411 9 O -0.525 6.525 10 N -0.723 5.723 11 C 0.127 3.873 12 C -0.092 4.092 13 C -0.119 4.119 14 C 0.188 3.812 15 N -0.727 5.727 16 C -0.238 4.238 17 H 0.069 0.931 18 C -0.013 4.013 19 N -0.934 5.934 20 Si 0.906 3.094 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C -0.164 4.164 25 C -0.177 4.177 26 H 0.058 0.942 27 H 0.048 0.952 28 H 0.061 0.939 29 H 0.095 0.905 30 H 0.067 0.933 31 H 0.143 0.857 32 H 0.168 0.832 33 H 0.397 0.603 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.088 0.912 38 H 0.026 0.974 39 H 0.017 0.983 40 H 0.385 0.615 41 H 0.255 0.745 42 H 0.088 0.912 43 H 0.096 0.904 44 H 0.092 0.908 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.003 -9.963 -16.039 22.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.110 4.110 3 C -0.036 4.036 4 C -0.179 4.179 5 C -0.368 4.368 6 S 0.467 5.533 7 C -0.389 4.389 8 C 0.375 3.625 9 O -0.404 6.404 10 N -0.374 5.374 11 C 0.004 3.996 12 C -0.130 4.130 13 C -0.120 4.120 14 C 0.060 3.940 15 N -0.371 5.371 16 C -0.370 4.370 17 H 0.087 0.913 18 C -0.209 4.209 19 N -0.582 5.582 20 Si 0.737 3.263 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.213 1.213 24 C -0.201 4.201 25 C -0.215 4.215 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.113 0.887 30 H 0.086 0.914 31 H 0.161 0.839 32 H 0.186 0.814 33 H 0.231 0.769 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.106 0.894 38 H 0.044 0.956 39 H 0.034 0.966 40 H 0.218 0.782 41 H 0.064 0.936 42 H 0.107 0.893 43 H 0.114 0.886 44 H 0.111 0.889 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 11.916 -9.420 -15.029 21.368 hybrid contribution -0.934 -0.010 -0.986 1.358 sum 10.982 -9.430 -16.015 21.587 Atomic orbital electron populations 1.21610 0.94191 1.01811 1.01927 1.20412 0.96620 0.90518 1.03478 1.19532 0.96081 0.97558 0.90418 1.19916 1.04039 0.94221 0.99678 1.25256 1.08298 1.01266 1.01937 1.83130 1.59885 1.11481 0.98756 1.24496 1.17019 0.99651 0.97704 1.16884 0.77857 0.85081 0.82698 1.90790 1.45671 1.18877 1.85048 1.45937 1.67636 1.16741 1.07101 1.21398 1.02029 0.97252 0.78895 1.21268 1.00931 0.98565 0.92241 1.21558 0.95218 1.02415 0.92813 1.20179 0.88361 0.88160 0.97255 1.42282 1.06377 1.00559 1.87915 1.19196 0.84837 0.91337 1.41595 0.91331 1.24701 0.97446 0.95727 1.03014 1.69648 1.31646 0.99675 1.57277 0.86288 0.84922 0.77178 0.77942 1.21313 1.21712 1.21306 1.22964 0.99895 0.98304 0.98982 1.22977 1.02988 0.91445 1.04081 0.92322 0.93271 0.92021 0.88707 0.91448 0.83888 0.81425 0.76904 0.90684 0.91491 0.91912 0.89395 0.95572 0.96561 0.78159 0.93551 0.89321 0.88586 0.88920 0.89251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.78 37.16 0.36 -1.14 16 2 C -0.07 -0.77 5.50 -27.88 -0.15 -0.92 16 3 C -0.02 -0.23 5.16 -105.48 -0.54 -0.78 16 4 C -0.15 -1.34 9.96 -41.41 -0.41 -1.75 16 5 C -0.23 -1.92 10.92 29.18 0.32 -1.60 16 6 S 0.20 1.89 22.16 -107.50 -2.38 -0.49 16 7 C -0.27 -3.31 6.45 -36.79 -0.24 -3.54 16 8 C 0.59 8.52 7.78 -12.90 -0.10 8.42 16 9 O -0.53 -8.85 13.72 5.18 0.07 -8.78 16 10 N -0.72 -9.67 5.55 -61.64 -0.34 -10.01 16 11 C 0.13 1.81 5.51 -4.04 -0.02 1.79 16 12 C -0.09 -1.35 5.24 -26.73 -0.14 -1.49 16 13 C -0.12 -1.90 1.52 -154.51 -0.23 -2.14 16 14 C 0.19 3.81 6.10 -4.04 -0.02 3.78 16 15 N -0.73 -18.21 5.30 -59.90 -0.32 -18.53 16 16 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 17 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 18 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 19 N -0.93 -27.99 13.06 55.49 0.72 -27.27 16 20 Si 0.91 22.53 29.55 -169.99 -5.02 17.50 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 22 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 C -0.16 -2.41 9.90 -26.73 -0.26 -2.67 16 25 C -0.18 -2.36 9.57 -26.73 -0.26 -2.62 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.82 7.60 -51.93 -0.39 0.43 16 29 H 0.09 1.20 6.33 -51.92 -0.33 0.87 16 30 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 31 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 32 H 0.17 0.95 8.06 -52.49 -0.42 0.53 16 33 H 0.40 4.60 7.59 -40.82 -0.31 4.30 16 34 H 0.07 1.24 7.69 -51.93 -0.40 0.84 16 35 H 0.07 0.92 7.80 -51.93 -0.41 0.52 16 36 H 0.06 0.80 7.94 -51.93 -0.41 0.38 16 37 H 0.09 1.50 7.64 -51.93 -0.40 1.11 16 38 H 0.03 0.55 7.69 -51.92 -0.40 0.15 16 39 H 0.02 0.34 8.09 -51.93 -0.42 -0.08 16 40 H 0.38 10.07 7.46 -40.82 -0.30 9.76 16 41 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 42 H 0.09 1.17 8.08 -51.93 -0.42 0.75 16 43 H 0.10 1.52 8.14 -51.93 -0.42 1.09 16 44 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.09 1.05 7.98 -51.93 -0.41 0.64 16 LS Contribution 384.34 15.07 5.79 5.79 Total: -1.00 -31.81 384.34 -10.54 -42.35 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: -7.11 Total: 11.41 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: -1.95 Total: -11.97 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: 0.06 Total: -55.81 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.07 Total: -8.78 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.50 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -2.38 Total: -0.49 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.81 -10.54 -42.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168291496.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.211 kcal (2) G-P(sol) polarization free energy of solvation -31.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds