Wall clock time and date at job start Tue Mar 31 2020 13:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50698 * 109.47445 * 2 1 4 4 C 1.37473 * 123.35028 * 264.70735 * 3 2 1 5 5 C 1.33818 * 115.10242 * 179.76632 * 4 3 2 6 6 S 1.70624 * 110.95081 * 0.48563 * 5 4 3 7 7 C 1.36649 * 123.35387 * 84.99918 * 3 2 1 8 8 C 1.46583 * 125.45629 * 359.96716 * 7 3 2 9 9 O 1.21705 * 120.00012 * 0.02562 * 8 7 3 10 10 N 1.34772 * 119.99791 * 179.97438 * 8 7 3 11 11 C 1.46510 * 119.99592 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.46770 * 180.02562 * 11 10 8 13 13 C 1.53001 * 109.47231 * 175.45887 * 12 11 10 14 14 C 1.53005 * 115.54940 * 279.32763 * 13 12 11 15 15 N 1.46504 * 109.46960 * 294.95091 * 14 13 12 16 16 C 1.36933 * 120.00114 * 174.37351 * 15 14 13 17 17 H 1.08003 * 119.99693 * 359.97438 * 16 15 14 18 18 C 1.38813 * 120.00191 * 179.97438 * 16 15 14 19 19 N 1.31614 * 119.99632 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00040 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47110 * 59.99959 * 20 18 16 22 22 H 1.48499 * 109.47189 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47051 * 300.00047 * 20 18 16 24 24 C 1.52998 * 117.50114 * 133.61491 * 13 12 11 25 25 C 1.52998 * 117.49843 * 64.99050 * 13 12 11 26 26 H 1.08998 * 109.47396 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46892 * 59.99709 * 1 2 3 28 28 H 1.09001 * 109.46747 * 300.00448 * 1 2 3 29 29 H 1.09008 * 109.46957 * 120.00210 * 2 1 3 30 30 H 1.08996 * 109.47026 * 239.99953 * 2 1 3 31 31 H 1.07996 * 122.45071 * 359.97438 * 4 3 2 32 32 H 1.07996 * 124.52425 * 180.19604 * 5 4 3 33 33 H 0.96990 * 120.00524 * 0.02562 * 10 8 7 34 34 H 1.08997 * 109.47449 * 299.99807 * 11 10 8 35 35 H 1.08998 * 109.46873 * 60.00588 * 11 10 8 36 36 H 1.09002 * 109.47298 * 295.45779 * 12 11 10 37 37 H 1.09003 * 109.47235 * 55.45872 * 12 11 10 38 38 H 1.09008 * 109.46974 * 54.94549 * 14 13 12 39 39 H 1.08993 * 109.47524 * 174.94876 * 14 13 12 40 40 H 0.97006 * 119.99632 * 354.36585 * 15 14 13 41 41 H 0.97005 * 119.99782 * 179.97438 * 19 18 16 42 42 H 1.08996 * 117.49901 * 0.02562 * 24 13 12 43 43 H 1.09003 * 117.49464 * 145.02438 * 24 13 12 44 44 H 1.09002 * 117.50082 * 214.97951 * 25 13 12 45 45 H 1.09001 * 117.49642 * 0.02562 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3842 2.0980 -1.1435 5 6 2.8044 3.3541 -0.9528 6 16 2.7927 3.7562 0.7054 7 6 2.1891 2.1623 1.1371 8 6 1.8995 1.7027 2.4985 9 8 1.4830 0.5743 2.6842 10 7 2.0953 2.5294 3.5447 11 6 1.8053 2.0702 4.9055 12 6 2.1107 3.1933 5.8986 13 6 1.7019 2.7545 7.3062 14 6 0.2125 2.8843 7.6313 15 7 -0.1686 4.2988 7.6191 16 6 -1.4821 4.6554 7.7697 17 1 -2.2372 3.8938 7.8971 18 6 -1.8431 5.9957 7.7586 19 7 -0.9228 6.9238 7.6039 20 14 -3.6350 6.4821 7.9633 21 1 -4.1362 5.9863 9.2703 22 1 -3.7549 7.9614 7.9155 23 1 -4.4384 5.8851 6.8663 24 6 2.6975 3.0036 8.4409 25 6 2.4613 1.5813 7.9289 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 2.3227 1.6502 -2.1243 32 1 3.1143 4.0224 -1.7425 33 1 2.4276 3.4285 3.3968 34 1 0.7530 1.7960 4.9799 35 1 2.4240 1.2029 5.1358 36 1 3.1783 3.4126 5.8821 37 1 1.5519 4.0867 5.6199 38 1 -0.3707 2.3444 6.8852 39 1 0.0180 2.4642 8.6181 40 1 0.5096 4.9828 7.5044 41 1 -1.1751 7.8604 7.5958 42 1 3.6436 3.4805 8.1847 43 1 2.2914 3.2602 9.4194 44 1 1.8999 0.9022 8.5706 45 1 3.2524 1.1223 7.3359 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168291496.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:44 Heat of formation + Delta-G solvation = -2.097423 kcal Electronic energy + Delta-G solvation = -24416.236551 eV Core-core repulsion = 20946.096788 eV Total energy + Delta-G solvation = -3470.139763 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.02989 -39.68092 -38.84952 -36.12936 -35.73511 -33.67135 -32.78120 -31.80996 -29.87258 -27.81984 -26.44131 -24.69588 -24.54461 -23.33153 -23.04960 -22.25568 -20.45007 -19.59595 -19.16530 -18.87685 -17.04164 -17.01713 -16.79884 -16.58814 -16.12547 -15.96042 -15.58235 -15.17890 -15.04560 -14.94449 -14.62170 -14.49959 -14.21047 -13.86671 -13.80673 -13.29555 -13.20197 -13.01893 -12.85696 -12.76640 -12.59423 -12.42364 -12.28379 -12.19328 -12.02631 -11.92595 -11.83682 -11.66309 -11.09931 -10.99039 -10.89109 -10.57761 -10.25651 -9.74583 -9.42102 -8.97423 -7.94543 -5.22123 -0.48560 0.50696 0.94090 1.40236 1.46044 1.48599 1.54689 2.06812 2.14537 2.54293 2.89175 3.38148 3.73048 3.81458 3.86671 3.88965 3.97019 4.05889 4.14634 4.25238 4.31615 4.39908 4.45884 4.47852 4.51983 4.62398 4.75372 4.83765 4.87092 4.92525 4.96347 5.06424 5.07729 5.08838 5.15342 5.25220 5.29548 5.33430 5.34411 5.37347 5.44713 5.48496 5.52540 6.27711 6.40025 7.08423 7.34951 8.10966 8.37217 9.28432 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.011443 B = 0.003050 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.242772 B = 9177.014149 C =10101.717500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.071 4.071 3 C -0.022 4.022 4 C -0.157 4.157 5 C -0.213 4.213 6 S 0.213 5.787 7 C -0.308 4.308 8 C 0.583 3.417 9 O -0.559 6.559 10 N -0.720 5.720 11 C 0.137 3.863 12 C -0.078 4.078 13 C -0.140 4.140 14 C 0.189 3.811 15 N -0.735 5.735 16 C -0.249 4.249 17 H 0.069 0.931 18 C -0.069 4.069 19 N -0.964 5.964 20 Si 0.969 3.031 21 H -0.279 1.279 22 H -0.292 1.292 23 H -0.281 1.281 24 C -0.163 4.163 25 C -0.150 4.150 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.028 0.972 29 H 0.070 0.930 30 H 0.094 0.906 31 H 0.170 0.830 32 H 0.201 0.799 33 H 0.405 0.595 34 H 0.045 0.955 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.058 0.942 38 H 0.016 0.984 39 H 0.013 0.987 40 H 0.377 0.623 41 H 0.252 0.748 42 H 0.108 0.892 43 H 0.080 0.920 44 H 0.097 0.903 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.147 -10.176 -17.697 24.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.110 4.110 3 C -0.039 4.039 4 C -0.187 4.187 5 C -0.351 4.351 6 S 0.482 5.518 7 C -0.428 4.428 8 C 0.371 3.629 9 O -0.441 6.441 10 N -0.371 5.371 11 C 0.013 3.987 12 C -0.116 4.116 13 C -0.141 4.141 14 C 0.062 3.938 15 N -0.378 5.378 16 C -0.381 4.381 17 H 0.087 0.913 18 C -0.262 4.262 19 N -0.615 5.615 20 Si 0.798 3.202 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.207 1.207 24 C -0.200 4.200 25 C -0.187 4.187 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.047 0.953 29 H 0.089 0.911 30 H 0.113 0.887 31 H 0.188 0.812 32 H 0.218 0.782 33 H 0.241 0.759 34 H 0.064 0.936 35 H 0.095 0.905 36 H 0.108 0.892 37 H 0.076 0.924 38 H 0.034 0.966 39 H 0.031 0.969 40 H 0.209 0.791 41 H 0.060 0.940 42 H 0.127 0.873 43 H 0.099 0.901 44 H 0.115 0.885 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 13.069 -9.649 -16.679 23.282 hybrid contribution -1.276 0.019 -0.509 1.374 sum 11.793 -9.630 -17.188 22.961 Atomic orbital electron populations 1.21564 0.94481 1.02136 1.00923 1.20404 0.96331 0.90717 1.03577 1.19821 0.95343 0.97680 0.91006 1.20129 1.04144 0.94454 0.99985 1.25703 1.06199 1.01351 1.01826 1.83059 1.59277 1.09586 0.99876 1.24415 1.19801 1.01781 0.96817 1.17271 0.77149 0.84703 0.83734 1.90760 1.47275 1.20262 1.85760 1.45885 1.67451 1.17119 1.06674 1.21212 1.00407 0.97539 0.79495 1.21115 1.01955 0.97143 0.91409 1.21391 0.92805 1.05839 0.94067 1.20223 0.91586 0.85422 0.96544 1.42417 1.05295 1.02350 1.87706 1.19568 0.86241 0.91630 1.40667 0.91305 1.25470 1.01413 0.95763 1.03546 1.69793 1.33401 0.99634 1.58650 0.85283 0.80291 0.76532 0.78084 1.20527 1.21798 1.20745 1.23011 0.99884 0.99615 0.97484 1.23063 1.02194 0.90630 1.02806 0.91398 0.91827 0.95280 0.91125 0.88720 0.81247 0.78205 0.75926 0.93629 0.90500 0.89197 0.92353 0.96610 0.96904 0.79079 0.93958 0.87339 0.90091 0.88504 0.86731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 9.78 71.98 0.70 -2.20 16 2 C -0.07 -1.50 5.50 29.85 0.16 -1.34 16 3 C -0.02 -0.48 5.16 -20.42 -0.11 -0.59 16 4 C -0.16 -2.43 9.96 21.08 0.21 -2.22 16 5 C -0.21 -2.90 10.92 66.81 0.73 -2.17 16 6 S 0.21 3.75 22.16 -56.49 -1.25 2.50 16 7 C -0.31 -7.55 6.45 24.08 0.16 -7.40 16 8 C 0.58 17.45 7.78 86.42 0.67 18.12 16 9 O -0.56 -19.82 13.72 -4.36 -0.06 -19.88 16 10 N -0.72 -19.68 5.55 -467.16 -2.59 -22.28 16 11 C 0.14 3.97 5.51 86.38 0.48 4.45 16 12 C -0.08 -2.28 5.24 30.59 0.16 -2.12 16 13 C -0.14 -4.43 1.52 -52.18 -0.08 -4.51 16 14 C 0.19 7.84 6.10 86.38 0.53 8.36 16 15 N -0.74 -37.82 5.30 -343.43 -1.82 -39.64 16 16 C -0.25 -14.25 9.99 84.03 0.84 -13.41 16 17 H 0.07 3.84 7.83 -2.91 -0.02 3.82 16 18 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 19 N -0.96 -58.80 13.06 21.65 0.28 -58.51 16 20 Si 0.97 46.76 29.55 68.60 2.03 48.79 16 21 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 22 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 23 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 24 C -0.16 -4.55 9.90 30.59 0.30 -4.24 16 25 C -0.15 -3.69 9.57 30.59 0.29 -3.39 16 26 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.03 0.80 7.60 -2.39 -0.02 0.79 16 29 H 0.07 1.85 6.33 -2.38 -0.02 1.84 16 30 H 0.09 1.43 8.12 -2.39 -0.02 1.42 16 31 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 32 H 0.20 1.38 8.06 -2.91 -0.02 1.36 16 33 H 0.41 9.50 7.59 -92.72 -0.70 8.79 16 34 H 0.05 1.58 7.69 -2.39 -0.02 1.57 16 35 H 0.08 2.08 7.80 -2.39 -0.02 2.06 16 36 H 0.09 2.12 7.94 -2.39 -0.02 2.10 16 37 H 0.06 2.05 7.64 -2.39 -0.02 2.03 16 38 H 0.02 0.69 7.69 -2.38 -0.02 0.67 16 39 H 0.01 0.55 8.09 -2.39 -0.02 0.53 16 40 H 0.38 20.32 7.46 -92.70 -0.69 19.63 16 41 H 0.25 14.88 8.31 -92.70 -0.77 14.11 16 42 H 0.11 2.60 8.08 -2.39 -0.02 2.58 16 43 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 44 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 45 H 0.11 2.31 7.98 -2.39 -0.02 2.29 16 Total: -1.00 -70.58 384.34 1.71 -68.88 By element: Atomic # 1 Polarization: 36.73 SS G_CDS: -0.39 Total: 36.34 kcal Atomic # 6 Polarization: -21.71 SS G_CDS: 5.52 Total: -16.20 kcal Atomic # 7 Polarization: -116.30 SS G_CDS: -4.13 Total: -120.43 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.06 Total: -19.88 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Atomic # 16 Polarization: 3.75 SS G_CDS: -1.25 Total: 2.50 kcal Total: -70.58 1.71 -68.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168291496.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.778 kcal (2) G-P(sol) polarization free energy of solvation -70.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds