Wall clock time and date at job start Tue Mar 31 2020 14:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46730 * 2 1 4 4 C 1.52998 * 109.47035 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.47445 * 305.00674 * 4 3 2 6 6 N 1.46508 * 109.46810 * 65.00505 * 4 3 2 7 7 C 1.34773 * 119.99820 * 274.72322 * 6 4 3 8 8 C 1.50704 * 119.99766 * 180.27490 * 7 6 4 9 9 O 1.21283 * 119.99975 * 0.27660 * 7 6 4 10 10 C 1.50705 * 109.47070 * 185.00182 * 4 3 2 11 11 O 1.21290 * 119.99713 * 240.00417 * 10 4 3 12 12 N 1.34768 * 119.99634 * 60.00308 * 10 4 3 13 13 C 1.40012 * 119.99873 * 174.89422 * 12 10 4 14 14 C 1.39365 * 119.91115 * 325.53624 * 13 12 10 15 15 C 1.38369 * 120.47115 * 179.71645 * 14 13 12 16 16 C 1.38008 * 120.28298 * 0.55563 * 15 14 13 17 17 F 1.35103 * 120.09396 * 179.70633 * 16 15 14 18 18 C 1.41009 * 119.81440 * 359.72058 * 16 15 14 19 19 C 1.41299 * 120.22804 * 179.97438 * 18 16 15 20 20 H 1.07999 * 119.99917 * 25.32162 * 19 18 16 21 21 C 1.39922 * 119.99580 * 205.32051 * 19 18 16 22 22 N 1.30853 * 120.00212 * 16.68828 * 21 19 18 23 23 Si 1.86798 * 119.99725 * 196.68382 * 21 19 18 24 24 H 1.48508 * 109.47064 * 60.00316 * 23 21 19 25 25 H 1.48500 * 109.47100 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47261 * 300.00265 * 23 21 19 27 27 C 1.38146 * 119.91028 * 145.80079 * 13 12 10 28 28 H 1.08999 * 109.47180 * 299.99342 * 1 2 3 29 29 H 1.08997 * 109.47328 * 60.00070 * 1 2 3 30 30 H 1.09007 * 109.46641 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46696 * 240.00673 * 2 1 3 32 32 H 1.08991 * 109.47025 * 120.00248 * 2 1 3 33 33 H 1.08999 * 109.46752 * 60.00396 * 3 2 1 34 34 H 1.09000 * 109.47418 * 300.00472 * 3 2 1 35 35 H 0.97003 * 119.99616 * 94.99994 * 6 4 3 36 36 H 1.08990 * 109.47030 * 0.02562 * 8 7 6 37 37 H 1.09003 * 109.46430 * 119.99920 * 8 7 6 38 38 H 1.08995 * 109.46851 * 239.99943 * 8 7 6 39 39 H 0.96997 * 120.00632 * 354.90221 * 12 10 4 40 40 H 1.07999 * 119.76382 * 359.97438 * 14 13 12 41 41 H 1.07993 * 119.85716 * 180.25629 * 15 14 13 42 42 H 0.96998 * 119.99532 * 180.02562 * 22 21 19 43 43 H 1.07997 * 120.14508 * 359.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4427 0.0006 5 1 3.9330 0.8533 0.8426 6 7 4.0588 0.8588 -1.2510 7 6 4.1928 -0.4774 -1.3641 8 6 4.7016 -1.0775 -2.6495 9 8 3.9041 -1.1969 -0.4314 10 6 4.0721 2.8582 0.1245 11 8 4.7697 3.3325 -0.7469 12 7 3.7461 3.5967 1.2036 13 6 4.2982 4.8724 1.3716 14 6 5.6011 5.1270 0.9477 15 6 6.1562 6.3850 1.1027 16 6 5.4280 7.3994 1.6902 17 9 5.9758 8.6247 1.8450 18 6 4.1106 7.1535 2.1287 19 6 3.3572 8.1857 2.7318 20 1 3.5813 9.2185 2.5093 21 6 2.3210 7.8696 3.6173 22 7 2.2506 6.6727 4.1415 23 14 1.0383 9.1563 4.0513 24 1 0.3356 9.5906 2.8172 25 1 0.0558 8.5751 5.0011 26 1 1.7033 10.3258 4.6800 27 6 3.5518 5.8738 1.9620 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0278 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6765 1.9564 -0.8899 35 1 4.2897 1.4344 -1.9969 36 1 4.9068 -0.2820 -3.3656 37 1 5.6178 -1.6342 -2.4528 38 1 3.9484 -1.7504 -3.0593 39 1 3.1290 3.2446 1.8640 40 1 6.1803 4.3380 0.4912 41 1 7.1654 6.5724 0.7669 42 1 1.5320 6.4535 4.7550 43 1 2.5435 5.6748 2.2938 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180978491.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:45 Heat of formation + Delta-G solvation = -115.060519 kcal Electronic energy + Delta-G solvation = -27034.090498 eV Core-core repulsion = 22992.839111 eV Total energy + Delta-G solvation = -4041.251386 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -47.25649 -40.61190 -39.30388 -37.29730 -35.74087 -34.51590 -33.66084 -33.36805 -30.83951 -29.85976 -28.94509 -27.66099 -25.44859 -24.74651 -21.83925 -21.36204 -21.25879 -20.50025 -19.82183 -17.81986 -17.63698 -16.84232 -16.21676 -16.02253 -15.89735 -15.55932 -15.13508 -14.85870 -14.66109 -14.22338 -14.02755 -13.97270 -13.54736 -13.32375 -13.00186 -12.94122 -12.70392 -12.67253 -12.25275 -12.11839 -11.87986 -11.79526 -11.62056 -11.56320 -11.26121 -11.14242 -11.09119 -10.75874 -10.67123 -10.36629 -10.00689 -9.79206 -9.65676 -9.38444 -9.22215 -9.01673 -7.68092 -7.11420 -6.82707 -4.52897 2.26635 2.49186 2.65689 2.86572 2.97316 2.99177 3.02998 3.15286 3.56933 3.82792 4.42596 4.59214 4.68921 4.81092 4.89506 4.99557 5.08662 5.19294 5.22768 5.35629 5.46044 5.51584 5.62706 5.76125 5.77481 5.89218 6.00055 6.03463 6.11411 6.26093 6.33832 6.44912 6.56539 6.75573 6.78701 7.03832 7.36606 7.39113 7.44114 7.55602 7.81073 7.84835 8.04929 8.10471 8.33079 8.49819 8.62406 8.71731 10.00872 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014866 B = 0.003353 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.071653 B = 8347.822958 C = 9945.662877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.115 4.115 3 C -0.128 4.128 4 C 0.127 3.873 5 H 0.115 0.885 6 N -0.709 5.709 7 C 0.512 3.488 8 C -0.170 4.170 9 O -0.545 6.545 10 C 0.505 3.495 11 O -0.523 6.523 12 N -0.656 5.656 13 C 0.140 3.860 14 C -0.206 4.206 15 C -0.111 4.111 16 C -0.032 4.032 17 F -0.163 7.163 18 C 0.099 3.901 19 C -0.452 4.452 20 H 0.084 0.916 21 C 0.077 3.923 22 N -0.792 5.792 23 Si 0.913 3.087 24 H -0.262 1.262 25 H -0.277 1.277 26 H -0.263 1.263 27 C -0.163 4.163 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.410 0.590 36 H 0.077 0.923 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.406 0.594 40 H 0.110 0.890 41 H 0.105 0.895 42 H 0.283 0.717 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.839 -12.753 -7.766 15.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.152 4.152 3 C -0.167 4.167 4 C 0.018 3.982 5 H 0.132 0.868 6 N -0.363 5.363 7 C 0.300 3.700 8 C -0.230 4.230 9 O -0.423 6.423 10 C 0.290 3.710 11 O -0.399 6.399 12 N -0.300 5.300 13 C 0.048 3.952 14 C -0.228 4.228 15 C -0.131 4.131 16 C -0.052 4.052 17 F -0.142 7.142 18 C 0.095 3.905 19 C -0.481 4.481 20 H 0.102 0.898 21 C -0.141 4.141 22 N -0.417 5.417 23 Si 0.737 3.263 24 H -0.187 1.187 25 H -0.202 1.202 26 H -0.188 1.188 27 C -0.185 4.185 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.248 0.752 36 H 0.096 0.904 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.241 0.759 40 H 0.128 0.872 41 H 0.123 0.877 42 H 0.094 0.906 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.656 -13.062 -7.546 15.317 hybrid contribution -0.639 0.885 0.316 1.137 sum -3.295 -12.176 -7.229 14.539 Atomic orbital electron populations 1.21807 0.96174 1.01411 1.01680 1.21562 0.95055 0.95321 1.03287 1.22043 0.92399 0.98756 1.03466 1.20866 0.95348 0.92110 0.89875 0.86778 1.45892 1.66954 1.07335 1.16140 1.20748 0.77204 0.81804 0.90265 1.21833 1.03635 1.02417 0.95087 1.90730 1.50231 1.60424 1.40921 1.20505 0.81067 0.87271 0.82114 1.90704 1.37595 1.72028 1.39559 1.43380 1.46590 1.16222 1.23771 1.17565 0.92654 0.83384 1.01617 1.20080 0.94641 0.96858 1.11172 1.20371 0.98718 0.92877 1.01124 1.17911 0.93582 0.80747 1.12976 1.91274 1.85758 1.42270 1.94867 1.17338 0.89011 0.93257 0.90911 1.19469 1.12406 0.94622 1.21637 0.89789 1.25895 0.97709 0.96390 0.94100 1.69787 1.29199 1.20910 1.21807 0.86267 0.79787 0.81071 0.79130 1.18667 1.20183 1.18791 1.20887 0.99885 0.91782 1.05938 0.92678 0.93052 0.92887 0.91755 0.91207 0.90290 0.90987 0.75236 0.90436 0.88692 0.88791 0.75887 0.87240 0.87716 0.90572 0.85139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.91 37.16 0.37 -1.09 16 2 C -0.11 -1.24 4.54 -26.73 -0.12 -1.36 16 3 C -0.13 -1.40 4.83 -26.73 -0.13 -1.53 16 4 C 0.13 1.58 2.67 -69.08 -0.18 1.39 16 5 H 0.11 1.46 7.57 -51.93 -0.39 1.06 16 6 N -0.71 -7.96 4.90 -54.93 -0.27 -8.23 16 7 C 0.51 5.63 6.52 -10.99 -0.07 5.56 16 8 C -0.17 -1.19 10.39 36.01 0.37 -0.81 16 9 O -0.55 -7.72 14.25 5.55 0.08 -7.64 16 10 C 0.50 8.07 6.95 -10.99 -0.08 7.99 16 11 O -0.52 -9.88 13.58 5.55 0.08 -9.80 16 12 N -0.66 -11.20 5.24 -9.89 -0.05 -11.25 16 13 C 0.14 3.04 6.25 -83.74 -0.52 2.51 16 14 C -0.21 -4.62 8.66 -39.11 -0.34 -4.96 16 15 C -0.11 -2.56 10.00 -39.62 -0.40 -2.96 16 16 C -0.03 -0.80 7.31 -38.62 -0.28 -1.08 16 17 F -0.16 -4.09 16.72 2.25 0.04 -4.05 16 18 C 0.10 2.57 5.57 -106.78 -0.60 1.97 16 19 C -0.45 -11.74 8.78 -37.79 -0.33 -12.07 16 20 H 0.08 2.17 7.74 -52.49 -0.41 1.76 16 21 C 0.08 1.85 5.16 -17.34 -0.09 1.76 16 22 N -0.79 -18.89 10.94 55.55 0.61 -18.29 16 23 Si 0.91 17.94 29.59 -169.99 -5.03 12.91 16 24 H -0.26 -5.13 7.11 56.52 0.40 -4.72 16 25 H -0.28 -5.23 7.11 56.52 0.40 -4.83 16 26 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 27 C -0.16 -3.91 8.59 -38.71 -0.33 -4.24 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.47 8.14 -51.92 -0.42 0.05 16 31 H 0.06 0.75 5.67 -51.93 -0.29 0.45 16 32 H 0.07 0.83 7.85 -51.93 -0.41 0.42 16 33 H 0.08 0.81 7.32 -51.93 -0.38 0.43 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.41 4.34 7.63 -40.82 -0.31 4.03 16 36 H 0.08 0.41 7.91 -51.93 -0.41 0.00 16 37 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.41 5.84 8.03 -40.82 -0.33 5.51 16 40 H 0.11 2.38 6.48 -52.49 -0.34 2.04 16 41 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 42 H 0.28 6.12 8.30 -40.82 -0.34 5.79 16 43 H 0.13 3.11 6.18 -52.49 -0.32 2.79 16 LS Contribution 360.23 15.07 5.43 5.43 Total: -1.00 -29.76 360.23 -7.54 -37.30 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -5.69 Total: 12.55 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: -2.73 Total: -8.92 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 0.29 Total: -37.76 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: 0.15 Total: -17.44 kcal Atomic # 9 Polarization: -4.09 SS G_CDS: 0.04 Total: -4.05 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.03 Total: 12.91 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.76 -7.54 -37.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180978491.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.761 kcal (2) G-P(sol) polarization free energy of solvation -29.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds