Wall clock time and date at job start Tue Mar 31 2020 14:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46730 * 2 1 4 4 C 1.52998 * 109.47035 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.47445 * 305.00674 * 4 3 2 6 6 N 1.46508 * 109.46810 * 65.00505 * 4 3 2 7 7 C 1.34773 * 119.99820 * 274.72322 * 6 4 3 8 8 C 1.50704 * 119.99766 * 180.27490 * 7 6 4 9 9 O 1.21283 * 119.99975 * 0.27660 * 7 6 4 10 10 C 1.50705 * 109.47070 * 185.00182 * 4 3 2 11 11 O 1.21290 * 119.99713 * 240.00417 * 10 4 3 12 12 N 1.34768 * 119.99634 * 60.00308 * 10 4 3 13 13 C 1.40012 * 119.99873 * 174.89422 * 12 10 4 14 14 C 1.39365 * 119.91115 * 325.53624 * 13 12 10 15 15 C 1.38369 * 120.47115 * 179.71645 * 14 13 12 16 16 C 1.38008 * 120.28298 * 0.55563 * 15 14 13 17 17 F 1.35103 * 120.09396 * 179.70633 * 16 15 14 18 18 C 1.41009 * 119.81440 * 359.72058 * 16 15 14 19 19 C 1.41299 * 120.22804 * 179.97438 * 18 16 15 20 20 H 1.07999 * 119.99917 * 25.32162 * 19 18 16 21 21 C 1.39922 * 119.99580 * 205.32051 * 19 18 16 22 22 N 1.30853 * 120.00212 * 16.68828 * 21 19 18 23 23 Si 1.86798 * 119.99725 * 196.68382 * 21 19 18 24 24 H 1.48508 * 109.47064 * 60.00316 * 23 21 19 25 25 H 1.48500 * 109.47100 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47261 * 300.00265 * 23 21 19 27 27 C 1.38146 * 119.91028 * 145.80079 * 13 12 10 28 28 H 1.08999 * 109.47180 * 299.99342 * 1 2 3 29 29 H 1.08997 * 109.47328 * 60.00070 * 1 2 3 30 30 H 1.09007 * 109.46641 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46696 * 240.00673 * 2 1 3 32 32 H 1.08991 * 109.47025 * 120.00248 * 2 1 3 33 33 H 1.08999 * 109.46752 * 60.00396 * 3 2 1 34 34 H 1.09000 * 109.47418 * 300.00472 * 3 2 1 35 35 H 0.97003 * 119.99616 * 94.99994 * 6 4 3 36 36 H 1.08990 * 109.47030 * 0.02562 * 8 7 6 37 37 H 1.09003 * 109.46430 * 119.99920 * 8 7 6 38 38 H 1.08995 * 109.46851 * 239.99943 * 8 7 6 39 39 H 0.96997 * 120.00632 * 354.90221 * 12 10 4 40 40 H 1.07999 * 119.76382 * 359.97438 * 14 13 12 41 41 H 1.07993 * 119.85716 * 180.25629 * 15 14 13 42 42 H 0.96998 * 119.99532 * 180.02562 * 22 21 19 43 43 H 1.07997 * 120.14508 * 359.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4427 0.0006 5 1 3.9330 0.8533 0.8426 6 7 4.0588 0.8588 -1.2510 7 6 4.1928 -0.4774 -1.3641 8 6 4.7016 -1.0775 -2.6495 9 8 3.9041 -1.1969 -0.4314 10 6 4.0721 2.8582 0.1245 11 8 4.7697 3.3325 -0.7469 12 7 3.7461 3.5967 1.2036 13 6 4.2982 4.8724 1.3716 14 6 5.6011 5.1270 0.9477 15 6 6.1562 6.3850 1.1027 16 6 5.4280 7.3994 1.6902 17 9 5.9758 8.6247 1.8450 18 6 4.1106 7.1535 2.1287 19 6 3.3572 8.1857 2.7318 20 1 3.5813 9.2185 2.5093 21 6 2.3210 7.8696 3.6173 22 7 2.2506 6.6727 4.1415 23 14 1.0383 9.1563 4.0513 24 1 0.3356 9.5906 2.8172 25 1 0.0558 8.5751 5.0011 26 1 1.7033 10.3258 4.6800 27 6 3.5518 5.8738 1.9620 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0278 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6765 1.9564 -0.8899 35 1 4.2897 1.4344 -1.9969 36 1 4.9068 -0.2820 -3.3656 37 1 5.6178 -1.6342 -2.4528 38 1 3.9484 -1.7504 -3.0593 39 1 3.1290 3.2446 1.8640 40 1 6.1803 4.3380 0.4912 41 1 7.1654 6.5724 0.7669 42 1 1.5320 6.4535 4.7550 43 1 2.5435 5.6748 2.2938 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180978491.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:45 Heat of formation + Delta-G solvation = -133.149437 kcal Electronic energy + Delta-G solvation = -27034.874892 eV Core-core repulsion = 22992.839111 eV Total energy + Delta-G solvation = -4042.035781 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.19666 -41.82098 -40.49199 -38.95246 -36.77586 -36.13439 -35.16446 -34.50014 -31.82169 -31.63013 -30.15014 -28.87342 -27.28968 -25.81764 -23.56854 -22.91992 -22.15946 -21.52875 -21.27978 -19.42131 -18.96145 -18.08110 -17.92775 -17.37959 -17.18421 -16.78817 -16.69222 -16.26039 -15.97659 -15.71643 -15.57141 -15.12943 -14.72884 -14.47126 -14.43351 -14.28010 -13.98782 -13.71762 -13.54618 -13.38336 -13.30353 -12.99888 -12.91459 -12.80765 -12.70457 -12.52047 -12.44804 -12.08286 -12.02748 -11.55282 -11.53423 -11.21516 -11.02622 -10.91829 -10.72142 -10.14359 -9.55426 -8.90094 -8.60790 -6.45573 0.57161 0.85344 1.39159 1.42532 1.50258 1.58659 1.61850 1.84439 2.19485 2.43056 2.63015 3.39479 3.49252 3.79852 3.92075 3.98266 4.02334 4.17957 4.27903 4.31693 4.52185 4.62447 4.63727 4.69034 4.70819 4.87012 4.92163 4.94302 4.95462 5.00044 5.08521 5.21217 5.23090 5.25841 5.36722 5.48792 5.57893 5.70585 5.72955 5.94815 6.09250 6.40195 6.52237 6.57813 6.74164 6.79599 7.09135 7.22183 8.23487 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014866 B = 0.003353 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.071653 B = 8347.822958 C = 9945.662877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.107 4.107 3 C -0.123 4.123 4 C 0.139 3.861 5 H 0.114 0.886 6 N -0.708 5.708 7 C 0.509 3.491 8 C -0.164 4.164 9 O -0.579 6.579 10 C 0.510 3.490 11 O -0.549 6.549 12 N -0.651 5.651 13 C 0.152 3.848 14 C -0.211 4.211 15 C -0.107 4.107 16 C -0.068 4.068 17 F -0.170 7.170 18 C 0.074 3.926 19 C -0.490 4.490 20 H 0.071 0.929 21 C 0.044 3.956 22 N -0.808 5.808 23 Si 0.982 3.018 24 H -0.261 1.261 25 H -0.259 1.259 26 H -0.266 1.266 27 C -0.176 4.176 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.415 0.585 36 H 0.096 0.904 37 H 0.103 0.897 38 H 0.107 0.893 39 H 0.419 0.581 40 H 0.119 0.881 41 H 0.127 0.873 42 H 0.295 0.705 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.978 -14.007 -8.284 16.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.145 4.145 3 C -0.162 4.162 4 C 0.030 3.970 5 H 0.132 0.868 6 N -0.363 5.363 7 C 0.299 3.701 8 C -0.223 4.223 9 O -0.459 6.459 10 C 0.297 3.703 11 O -0.426 6.426 12 N -0.296 5.296 13 C 0.058 3.942 14 C -0.232 4.232 15 C -0.127 4.127 16 C -0.089 4.089 17 F -0.149 7.149 18 C 0.070 3.930 19 C -0.519 4.519 20 H 0.089 0.911 21 C -0.173 4.173 22 N -0.433 5.433 23 Si 0.803 3.197 24 H -0.185 1.185 25 H -0.183 1.183 26 H -0.190 1.190 27 C -0.198 4.198 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.105 0.895 34 H 0.092 0.908 35 H 0.253 0.747 36 H 0.115 0.885 37 H 0.121 0.879 38 H 0.126 0.874 39 H 0.257 0.743 40 H 0.137 0.863 41 H 0.145 0.855 42 H 0.106 0.894 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.793 -14.354 -8.077 16.902 hybrid contribution -0.233 1.176 0.446 1.279 sum -4.026 -13.178 -7.631 15.751 Atomic orbital electron populations 1.21787 0.94991 1.01951 1.02104 1.21459 0.95994 0.94682 1.02349 1.22038 0.91076 0.99144 1.03967 1.20741 0.96247 0.89304 0.90757 0.86799 1.45964 1.66923 1.07720 1.15645 1.21481 0.76244 0.81246 0.91171 1.21875 1.04128 1.03113 0.93183 1.90718 1.51747 1.61001 1.42475 1.21084 0.80025 0.88192 0.80991 1.90690 1.38674 1.72883 1.40389 1.43337 1.46824 1.14762 1.24727 1.17582 0.92261 0.84717 0.99600 1.20270 0.95010 0.96841 1.11105 1.20628 0.99526 0.92516 0.99990 1.18184 0.94186 0.81258 1.15244 1.91235 1.85808 1.42723 1.95134 1.17713 0.89576 0.94350 0.91375 1.19637 1.14526 0.94173 1.23556 0.91071 1.26636 0.98771 0.98607 0.93277 1.69786 1.29811 1.22097 1.21587 0.85243 0.77192 0.78239 0.79063 1.18488 1.18258 1.19011 1.20852 1.00025 0.91810 1.07089 0.92319 0.92548 0.92341 0.92492 0.92359 0.89496 0.90803 0.74714 0.88523 0.87867 0.87407 0.74271 0.86337 0.85516 0.89388 0.85379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 9.91 71.98 0.71 -1.87 16 2 C -0.11 -2.17 4.54 30.60 0.14 -2.03 16 3 C -0.12 -2.51 4.83 30.59 0.15 -2.37 16 4 C 0.14 3.26 2.67 44.24 0.12 3.38 16 5 H 0.11 2.77 7.57 -2.39 -0.02 2.75 16 6 N -0.71 -14.78 4.90 -446.08 -2.19 -16.96 16 7 C 0.51 10.36 6.52 87.66 0.57 10.93 16 8 C -0.16 -1.87 10.39 71.24 0.74 -1.13 16 9 O -0.58 -15.76 14.25 -3.04 -0.04 -15.81 16 10 C 0.51 15.66 6.95 87.66 0.61 16.27 16 11 O -0.55 -20.11 13.58 -3.06 -0.04 -20.15 16 12 N -0.65 -21.62 5.24 -303.61 -1.59 -23.21 16 13 C 0.15 6.56 6.25 38.08 0.24 6.80 16 14 C -0.21 -9.37 8.66 22.57 0.20 -9.17 16 15 C -0.11 -4.95 10.00 22.25 0.22 -4.73 16 16 C -0.07 -3.55 7.31 22.89 0.17 -3.38 16 17 F -0.17 -8.83 16.72 44.97 0.75 -8.08 16 18 C 0.07 3.93 5.57 -21.26 -0.12 3.81 16 19 C -0.49 -26.18 8.78 23.43 0.21 -25.97 16 20 H 0.07 3.84 7.74 -2.91 -0.02 3.81 16 21 C 0.04 2.11 5.16 85.25 0.44 2.55 16 22 N -0.81 -38.33 10.94 21.82 0.24 -38.10 16 23 Si 0.98 36.37 29.59 68.60 2.03 38.40 16 24 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 25 H -0.26 -8.75 7.11 99.48 0.71 -8.05 16 26 H -0.27 -9.86 7.11 99.48 0.71 -9.16 16 27 C -0.18 -8.52 8.59 22.83 0.20 -8.33 16 28 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.06 1.24 5.67 -2.39 -0.01 1.23 16 32 H 0.06 1.32 7.85 -2.39 -0.02 1.30 16 33 H 0.09 1.63 7.32 -2.39 -0.02 1.62 16 34 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.41 8.07 7.63 -92.71 -0.71 7.36 16 36 H 0.10 0.74 7.91 -2.39 -0.02 0.72 16 37 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.42 11.58 8.03 -92.71 -0.74 10.84 16 40 H 0.12 5.03 6.48 -2.91 -0.02 5.01 16 41 H 0.13 5.14 8.06 -2.91 -0.02 5.12 16 42 H 0.30 12.43 8.30 -92.71 -0.77 11.66 16 43 H 0.13 6.16 6.18 -2.91 -0.02 6.14 16 Total: -1.00 -64.72 360.23 3.36 -61.37 By element: Atomic # 1 Polarization: 38.17 SS G_CDS: -0.39 Total: 37.78 kcal Atomic # 6 Polarization: -19.82 SS G_CDS: 4.59 Total: -15.24 kcal Atomic # 7 Polarization: -74.73 SS G_CDS: -3.54 Total: -78.27 kcal Atomic # 8 Polarization: -35.88 SS G_CDS: -0.08 Total: -35.96 kcal Atomic # 9 Polarization: -8.83 SS G_CDS: 0.75 Total: -8.08 kcal Atomic # 14 Polarization: 36.37 SS G_CDS: 2.03 Total: 38.40 kcal Total: -64.72 3.36 -61.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180978491.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.783 kcal (2) G-P(sol) polarization free energy of solvation -64.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds