Wall clock time and date at job start Tue Mar 31 2020 14:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47244 * 2 1 4 4 C 1.53000 * 109.47629 * 180.02562 * 3 2 1 5 5 C 1.50695 * 109.47189 * 179.97438 * 4 3 2 6 6 O 1.21279 * 120.00194 * 0.02562 * 5 4 3 7 7 N 1.34780 * 119.99737 * 179.97438 * 5 4 3 8 8 C 1.46506 * 119.99692 * 180.02562 * 7 5 4 9 9 C 1.50701 * 109.46786 * 180.02562 * 8 7 5 10 10 O 1.21290 * 120.00210 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99584 * 179.97438 * 9 8 7 12 12 C 1.40011 * 119.99598 * 175.44920 * 11 9 8 13 13 C 1.39367 * 119.91637 * 325.90431 * 12 11 9 14 14 C 1.38357 * 120.47584 * 180.02562 * 13 12 11 15 15 C 1.38010 * 120.28647 * 359.97438 * 14 13 12 16 16 F 1.35099 * 120.09821 * 179.97438 * 15 14 13 17 17 C 1.41011 * 119.81066 * 359.97438 * 15 14 13 18 18 C 1.41291 * 120.22941 * 179.97438 * 17 15 14 19 19 H 1.08009 * 119.99922 * 334.90038 * 18 17 15 20 20 C 1.39921 * 120.00408 * 155.18081 * 18 17 15 21 21 N 1.30853 * 120.00418 * 160.46749 * 20 18 17 22 22 Si 1.86803 * 119.99705 * 340.46556 * 20 18 17 23 23 H 1.48501 * 109.46812 * 95.25203 * 22 20 18 24 24 H 1.48498 * 109.46935 * 215.24822 * 22 20 18 25 25 H 1.48492 * 109.47054 * 335.25451 * 22 20 18 26 26 C 1.38152 * 119.90937 * 146.13510 * 12 11 9 27 27 H 1.08997 * 109.46645 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47043 * 299.99811 * 1 2 3 29 29 H 1.08993 * 109.47580 * 60.00076 * 1 2 3 30 30 H 1.08999 * 109.47493 * 239.99741 * 2 1 3 31 31 H 1.09006 * 109.47638 * 119.99651 * 2 1 3 32 32 H 1.08999 * 109.47087 * 59.99492 * 3 2 1 33 33 H 1.09009 * 109.46994 * 300.00467 * 3 2 1 34 34 H 1.08998 * 109.47074 * 59.99627 * 4 3 2 35 35 H 1.08999 * 109.46786 * 299.99636 * 4 3 2 36 36 H 0.96995 * 119.99947 * 359.97438 * 7 5 4 37 37 H 1.08998 * 109.47288 * 60.00347 * 8 7 5 38 38 H 1.08999 * 109.47133 * 300.00011 * 8 7 5 39 39 H 0.96994 * 120.00672 * 355.45685 * 11 9 8 40 40 H 1.07999 * 119.75863 * 359.97438 * 13 12 11 41 41 H 1.07998 * 119.86538 * 179.97438 * 14 13 12 42 42 H 0.96999 * 120.00156 * 180.02562 * 21 20 18 43 43 H 1.07999 * 120.13857 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0722 2.8634 -0.0013 6 8 3.2841 3.7852 -0.0008 7 7 5.3973 3.1097 -0.0014 8 6 5.8856 4.4910 -0.0014 9 6 7.3926 4.4910 -0.0022 10 8 7.9991 3.4406 -0.0031 11 7 8.0664 5.6583 -0.0029 12 6 9.4632 5.6602 0.0926 13 6 10.1092 4.6887 0.8550 14 6 11.4889 4.6801 0.9578 15 6 12.2415 5.6349 0.3048 16 9 13.5884 5.6233 0.4082 17 6 11.6005 6.6229 -0.4708 18 6 12.3623 7.6050 -1.1427 19 1 13.3427 7.8720 -0.7765 20 6 11.8444 8.2358 -2.2792 21 7 12.3421 9.3786 -2.6773 22 14 10.4422 7.4466 -3.2282 23 1 9.1503 8.0142 -2.7656 24 1 10.6113 7.7182 -4.6783 25 1 10.4504 5.9801 -2.9949 26 6 10.1974 6.6281 -0.5654 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6766 1.9564 -0.8900 34 1 3.9330 0.9289 -0.8908 35 1 3.9337 0.9287 0.8892 36 1 6.0276 2.3725 -0.0007 37 1 5.5224 5.0048 0.8886 38 1 5.5222 5.0048 -0.8914 39 1 7.5837 6.4969 -0.0694 40 1 9.5284 3.9377 1.3700 41 1 11.9792 3.9229 1.5517 42 1 11.9828 9.8161 -3.4649 43 1 9.6960 7.3831 -1.1527 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183269987.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:55 Heat of formation + Delta-G solvation = -119.103499 kcal Electronic energy + Delta-G solvation = -25884.368090 eV Core-core repulsion = 21842.941387 eV Total energy + Delta-G solvation = -4041.426703 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -47.41861 -40.47923 -39.57588 -37.54928 -35.74335 -34.75968 -34.40528 -33.56737 -31.13659 -30.69066 -29.25938 -27.30323 -25.36036 -24.63707 -22.15761 -21.76656 -21.30091 -20.59404 -19.95146 -18.01600 -17.76219 -16.81229 -16.53745 -16.44642 -16.15102 -15.76774 -15.65776 -15.07217 -14.83674 -14.44067 -14.22962 -14.20386 -14.00276 -13.54118 -13.39924 -13.25636 -12.87103 -12.65803 -12.61625 -12.34646 -12.02972 -11.88735 -11.66022 -11.56065 -11.53222 -11.34308 -10.98153 -10.91911 -10.76535 -10.37880 -10.12859 -9.93662 -9.84574 -9.40261 -9.34346 -9.29386 -7.94639 -7.24143 -7.16404 -4.67016 2.00586 2.39531 2.40695 2.67819 2.74828 2.93854 3.09360 3.19134 3.41066 3.80236 4.26385 4.40392 4.49999 4.59752 4.61187 4.89597 4.94508 5.10130 5.13694 5.15501 5.16045 5.33366 5.47288 5.49491 5.59746 5.63712 5.77146 5.79493 5.91281 6.00576 6.08651 6.16435 6.28123 6.33732 6.48784 6.85971 7.10330 7.23250 7.26801 7.35967 7.40737 7.66677 7.87320 7.98163 8.12256 8.21524 8.42465 8.54601 9.84562 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021321 B = 0.002385 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.935643 B =11739.645211 C =12664.568295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.105 4.105 4 C -0.140 4.140 5 C 0.514 3.486 6 O -0.544 6.544 7 N -0.719 5.719 8 C 0.100 3.900 9 C 0.504 3.496 10 O -0.519 6.519 11 N -0.663 5.663 12 C 0.169 3.831 13 C -0.215 4.215 14 C -0.098 4.098 15 C -0.018 4.018 16 F -0.156 7.156 17 C 0.080 3.920 18 C -0.429 4.429 19 H 0.098 0.902 20 C 0.084 3.916 21 N -0.791 5.791 22 Si 0.915 3.085 23 H -0.270 1.270 24 H -0.289 1.289 25 H -0.242 1.242 26 C -0.250 4.250 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.413 0.587 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.407 0.593 40 H 0.116 0.884 41 H 0.111 0.889 42 H 0.289 0.711 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.086 -12.136 3.170 22.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.143 4.143 4 C -0.180 4.180 5 C 0.301 3.699 6 O -0.421 6.421 7 N -0.374 5.374 8 C -0.028 4.028 9 C 0.290 3.710 10 O -0.394 6.394 11 N -0.307 5.307 12 C 0.077 3.923 13 C -0.236 4.236 14 C -0.117 4.117 15 C -0.038 4.038 16 F -0.135 7.135 17 C 0.076 3.924 18 C -0.457 4.457 19 H 0.116 0.884 20 C -0.137 4.137 21 N -0.414 5.414 22 Si 0.741 3.259 23 H -0.197 1.197 24 H -0.216 1.216 25 H -0.165 1.165 26 C -0.272 4.272 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.251 0.749 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.242 0.758 40 H 0.134 0.866 41 H 0.129 0.871 42 H 0.100 0.900 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -18.118 -11.983 3.015 21.931 hybrid contribution -0.147 0.084 -0.560 0.585 sum -18.265 -11.899 2.454 21.937 Atomic orbital electron populations 1.21759 0.95694 1.01540 1.02029 1.21555 0.96152 0.96556 1.02085 1.21384 0.92549 0.96680 1.03674 1.21694 0.98151 0.93381 1.04758 1.20783 0.81514 0.92074 0.75510 1.90708 1.55298 1.46555 1.49561 1.45784 1.07722 1.08262 1.75674 1.21054 0.91058 0.85705 1.04981 1.20498 0.89484 0.84346 0.76687 1.90717 1.69493 1.30943 1.48280 1.43401 1.06586 1.08725 1.72013 1.17390 0.80082 0.97526 0.97290 1.20071 0.93185 1.03074 1.07300 1.20467 0.93704 0.97850 0.99726 1.17721 0.76298 1.00421 1.09364 1.91310 1.30277 1.96484 1.95469 1.17407 0.91205 0.91253 0.92575 1.19457 1.04121 1.13868 1.08220 0.88396 1.26217 0.97051 0.93082 0.97369 1.69693 1.37909 1.11949 1.21821 0.86276 0.79713 0.82773 0.77116 1.19664 1.21609 1.16462 1.20485 0.93218 1.04076 1.09372 0.92782 0.92661 0.92654 0.91922 0.91923 0.91163 0.91172 0.88663 0.88655 0.74884 0.88122 0.88307 0.75751 0.86647 0.87116 0.90000 0.87150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.16 0.37 -0.52 16 2 C -0.13 -0.75 5.93 -26.73 -0.16 -0.91 16 3 C -0.10 -0.80 4.50 -26.73 -0.12 -0.92 16 4 C -0.14 -1.02 5.70 -27.89 -0.16 -1.18 16 5 C 0.51 5.56 7.83 -10.99 -0.09 5.47 16 6 O -0.54 -7.70 15.98 5.56 0.09 -7.62 16 7 N -0.72 -7.66 5.53 -61.47 -0.34 -8.00 16 8 C 0.10 1.11 6.16 -5.19 -0.03 1.08 16 9 C 0.50 7.36 7.64 -10.99 -0.08 7.27 16 10 O -0.52 -9.11 13.36 5.55 0.07 -9.03 16 11 N -0.66 -10.39 5.34 -9.89 -0.05 -10.44 16 12 C 0.17 3.43 6.26 -83.73 -0.52 2.91 16 13 C -0.22 -4.45 8.66 -39.12 -0.34 -4.79 16 14 C -0.10 -2.09 10.00 -39.62 -0.40 -2.48 16 15 C -0.02 -0.42 7.31 -38.61 -0.28 -0.71 16 16 F -0.16 -3.80 16.71 2.25 0.04 -3.76 16 17 C 0.08 2.00 5.22 -106.78 -0.56 1.44 16 18 C -0.43 -11.39 9.30 -37.79 -0.35 -11.74 16 19 H 0.10 2.77 7.89 -52.48 -0.41 2.36 16 20 C 0.08 2.11 5.41 -17.34 -0.09 2.02 16 21 N -0.79 -20.16 13.93 55.55 0.77 -19.39 16 22 Si 0.91 19.86 24.43 -169.99 -4.15 15.70 16 23 H -0.27 -5.45 6.64 56.52 0.38 -5.07 16 24 H -0.29 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.24 -5.52 6.79 56.52 0.38 -5.13 16 26 C -0.25 -5.62 7.08 -38.71 -0.27 -5.89 16 27 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 33 H 0.07 0.61 8.10 -51.92 -0.42 0.19 16 34 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.41 4.19 7.44 -40.82 -0.30 3.89 16 37 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.41 5.04 8.82 -40.82 -0.36 4.68 16 40 H 0.12 2.27 6.43 -52.49 -0.34 1.94 16 41 H 0.11 2.08 8.06 -52.49 -0.42 1.65 16 42 H 0.29 6.61 8.30 -40.82 -0.34 6.27 16 43 H 0.11 2.40 4.18 -52.49 -0.22 2.18 16 LS Contribution 363.32 15.07 5.48 5.48 Total: -1.00 -30.56 363.32 -7.07 -37.62 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -5.88 Total: 8.40 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: -3.09 Total: -8.96 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: 0.38 Total: -37.84 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: 0.16 Total: -16.65 kcal Atomic # 9 Polarization: -3.80 SS G_CDS: 0.04 Total: -3.76 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -4.15 Total: 15.70 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.56 -7.07 -37.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183269987.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.479 kcal (2) G-P(sol) polarization free energy of solvation -30.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds