Wall clock time and date at job start Tue Mar 31 2020 14:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47244 * 2 1 4 4 C 1.53000 * 109.47629 * 180.02562 * 3 2 1 5 5 C 1.50695 * 109.47189 * 179.97438 * 4 3 2 6 6 O 1.21279 * 120.00194 * 0.02562 * 5 4 3 7 7 N 1.34780 * 119.99737 * 179.97438 * 5 4 3 8 8 C 1.46506 * 119.99692 * 180.02562 * 7 5 4 9 9 C 1.50701 * 109.46786 * 180.02562 * 8 7 5 10 10 O 1.21290 * 120.00210 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99584 * 179.97438 * 9 8 7 12 12 C 1.40011 * 119.99598 * 175.44920 * 11 9 8 13 13 C 1.39367 * 119.91637 * 325.90431 * 12 11 9 14 14 C 1.38357 * 120.47584 * 180.02562 * 13 12 11 15 15 C 1.38010 * 120.28647 * 359.97438 * 14 13 12 16 16 F 1.35099 * 120.09821 * 179.97438 * 15 14 13 17 17 C 1.41011 * 119.81066 * 359.97438 * 15 14 13 18 18 C 1.41291 * 120.22941 * 179.97438 * 17 15 14 19 19 H 1.08009 * 119.99922 * 334.90038 * 18 17 15 20 20 C 1.39921 * 120.00408 * 155.18081 * 18 17 15 21 21 N 1.30853 * 120.00418 * 160.46749 * 20 18 17 22 22 Si 1.86803 * 119.99705 * 340.46556 * 20 18 17 23 23 H 1.48501 * 109.46812 * 95.25203 * 22 20 18 24 24 H 1.48498 * 109.46935 * 215.24822 * 22 20 18 25 25 H 1.48492 * 109.47054 * 335.25451 * 22 20 18 26 26 C 1.38152 * 119.90937 * 146.13510 * 12 11 9 27 27 H 1.08997 * 109.46645 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47043 * 299.99811 * 1 2 3 29 29 H 1.08993 * 109.47580 * 60.00076 * 1 2 3 30 30 H 1.08999 * 109.47493 * 239.99741 * 2 1 3 31 31 H 1.09006 * 109.47638 * 119.99651 * 2 1 3 32 32 H 1.08999 * 109.47087 * 59.99492 * 3 2 1 33 33 H 1.09009 * 109.46994 * 300.00467 * 3 2 1 34 34 H 1.08998 * 109.47074 * 59.99627 * 4 3 2 35 35 H 1.08999 * 109.46786 * 299.99636 * 4 3 2 36 36 H 0.96995 * 119.99947 * 359.97438 * 7 5 4 37 37 H 1.08998 * 109.47288 * 60.00347 * 8 7 5 38 38 H 1.08999 * 109.47133 * 300.00011 * 8 7 5 39 39 H 0.96994 * 120.00672 * 355.45685 * 11 9 8 40 40 H 1.07999 * 119.75863 * 359.97438 * 13 12 11 41 41 H 1.07998 * 119.86538 * 179.97438 * 14 13 12 42 42 H 0.96999 * 120.00156 * 180.02562 * 21 20 18 43 43 H 1.07999 * 120.13857 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0722 2.8634 -0.0013 6 8 3.2841 3.7852 -0.0008 7 7 5.3973 3.1097 -0.0014 8 6 5.8856 4.4910 -0.0014 9 6 7.3926 4.4910 -0.0022 10 8 7.9991 3.4406 -0.0031 11 7 8.0664 5.6583 -0.0029 12 6 9.4632 5.6602 0.0926 13 6 10.1092 4.6887 0.8550 14 6 11.4889 4.6801 0.9578 15 6 12.2415 5.6349 0.3048 16 9 13.5884 5.6233 0.4082 17 6 11.6005 6.6229 -0.4708 18 6 12.3623 7.6050 -1.1427 19 1 13.3427 7.8720 -0.7765 20 6 11.8444 8.2358 -2.2792 21 7 12.3421 9.3786 -2.6773 22 14 10.4422 7.4466 -3.2282 23 1 9.1503 8.0142 -2.7656 24 1 10.6113 7.7182 -4.6783 25 1 10.4504 5.9801 -2.9949 26 6 10.1974 6.6281 -0.5654 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6766 1.9564 -0.8900 34 1 3.9330 0.9289 -0.8908 35 1 3.9337 0.9287 0.8892 36 1 6.0276 2.3725 -0.0007 37 1 5.5224 5.0048 0.8886 38 1 5.5222 5.0048 -0.8914 39 1 7.5837 6.4969 -0.0694 40 1 9.5284 3.9377 1.3700 41 1 11.9792 3.9229 1.5517 42 1 11.9828 9.8161 -3.4649 43 1 9.6960 7.3831 -1.1527 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183269987.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:54 Heat of formation + Delta-G solvation = -139.534132 kcal Electronic energy + Delta-G solvation = -25885.254028 eV Core-core repulsion = 21842.941387 eV Total energy + Delta-G solvation = -4042.312642 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.29546 -41.65768 -40.60729 -39.14516 -36.35406 -36.15509 -35.46480 -35.27209 -32.52407 -31.78032 -30.57776 -28.46384 -27.20115 -25.30898 -23.90006 -23.05114 -21.97820 -21.53489 -21.29127 -19.50367 -19.12358 -18.37612 -17.97356 -17.37793 -17.23138 -16.95514 -16.76037 -16.60915 -16.20055 -16.07347 -15.50963 -15.33304 -15.11849 -14.64829 -14.49657 -14.32156 -14.18970 -14.04533 -13.85672 -13.63487 -13.39874 -13.21182 -13.19152 -12.75062 -12.51764 -12.17779 -12.13974 -12.07200 -11.84617 -11.71246 -11.42358 -11.23940 -11.06963 -10.99125 -10.88210 -10.24520 -9.74605 -9.03127 -8.91316 -6.62524 0.38003 0.62015 1.17554 1.31201 1.44928 1.48566 1.61590 1.69247 2.03773 2.38093 2.48697 3.25697 3.46358 3.78908 3.85827 3.96341 4.08477 4.09496 4.27040 4.29249 4.42300 4.45657 4.49387 4.57558 4.67579 4.75614 4.78898 4.81139 4.96604 5.02189 5.11689 5.13556 5.22373 5.32265 5.41382 5.43534 5.53081 5.55978 5.56880 5.66887 5.98178 6.16183 6.41044 6.46568 6.52377 6.62256 7.00778 7.17069 8.04752 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021321 B = 0.002385 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.935643 B =11739.645211 C =12664.568295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.122 4.122 3 C -0.103 4.103 4 C -0.135 4.135 5 C 0.513 3.487 6 O -0.581 6.581 7 N -0.717 5.717 8 C 0.108 3.892 9 C 0.510 3.490 10 O -0.546 6.546 11 N -0.658 5.658 12 C 0.179 3.821 13 C -0.205 4.205 14 C -0.090 4.090 15 C -0.052 4.052 16 F -0.167 7.167 17 C 0.065 3.935 18 C -0.471 4.471 19 H 0.056 0.944 20 C 0.051 3.949 21 N -0.830 5.830 22 Si 0.967 3.033 23 H -0.238 1.238 24 H -0.277 1.277 25 H -0.259 1.259 26 C -0.252 4.252 27 H 0.062 0.938 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.417 0.583 37 H 0.118 0.882 38 H 0.113 0.887 39 H 0.425 0.575 40 H 0.133 0.867 41 H 0.138 0.862 42 H 0.300 0.700 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.137 -14.189 3.340 25.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.159 4.159 3 C -0.141 4.141 4 C -0.174 4.174 5 C 0.302 3.698 6 O -0.461 6.461 7 N -0.373 5.373 8 C -0.020 4.020 9 C 0.299 3.701 10 O -0.423 6.423 11 N -0.304 5.304 12 C 0.085 3.915 13 C -0.226 4.226 14 C -0.110 4.110 15 C -0.072 4.072 16 F -0.146 7.146 17 C 0.061 3.939 18 C -0.499 4.499 19 H 0.074 0.926 20 C -0.167 4.167 21 N -0.454 5.454 22 Si 0.790 3.210 23 H -0.163 1.163 24 H -0.204 1.204 25 H -0.183 1.183 26 C -0.273 4.273 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.256 0.744 37 H 0.136 0.864 38 H 0.131 0.869 39 H 0.264 0.736 40 H 0.151 0.849 41 H 0.156 0.844 42 H 0.111 0.889 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -21.191 -14.025 3.197 25.612 hybrid contribution 0.747 0.586 -0.472 1.060 sum -20.444 -13.438 2.725 24.617 Atomic orbital electron populations 1.21785 0.95840 1.02002 1.01671 1.21533 0.96041 0.95423 1.02942 1.21344 0.92965 0.97512 1.02259 1.21753 0.97641 0.91364 1.06655 1.21358 0.81036 0.93053 0.74347 1.90698 1.56088 1.47943 1.51366 1.45831 1.07877 1.08167 1.75403 1.21048 0.87949 0.86500 1.06461 1.21029 0.90737 0.83284 0.75098 1.90710 1.70428 1.31881 1.49244 1.43365 1.04688 1.10348 1.72043 1.17416 0.82400 0.96118 0.95563 1.20406 0.93010 1.02936 1.06265 1.20780 0.94087 0.97288 0.98834 1.18073 0.76292 1.01760 1.11092 1.91272 1.31052 1.96632 1.95678 1.17601 0.92505 0.91103 0.92721 1.19357 1.03370 1.16624 1.10582 0.92574 1.26891 0.99245 0.93173 0.97343 1.69708 1.39728 1.13022 1.22954 0.85493 0.78384 0.80653 0.76509 1.16301 1.20356 1.18296 1.20579 0.92307 1.04881 1.09564 0.91901 0.93022 0.93089 0.91078 0.90973 0.92565 0.92695 0.86736 0.86559 0.74392 0.86422 0.86933 0.73633 0.84893 0.84390 0.88916 0.86314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 9.91 71.98 0.71 -0.85 16 2 C -0.12 -1.17 5.93 30.59 0.18 -0.99 16 3 C -0.10 -1.38 4.50 30.59 0.14 -1.25 16 4 C -0.13 -1.57 5.70 29.85 0.17 -1.40 16 5 C 0.51 9.72 7.83 87.65 0.69 10.40 16 6 O -0.58 -15.33 15.98 -3.02 -0.05 -15.38 16 7 N -0.72 -12.91 5.53 -466.78 -2.58 -15.49 16 8 C 0.11 1.99 6.16 85.63 0.53 2.52 16 9 C 0.51 13.00 7.64 87.66 0.67 13.67 16 10 O -0.55 -17.24 13.36 -3.06 -0.04 -17.28 16 11 N -0.66 -18.23 5.34 -303.60 -1.62 -19.85 16 12 C 0.18 6.78 6.26 38.09 0.24 7.02 16 13 C -0.21 -7.91 8.66 22.57 0.20 -7.71 16 14 C -0.09 -3.72 10.00 22.24 0.22 -3.50 16 15 C -0.05 -2.52 7.31 22.90 0.17 -2.35 16 16 F -0.17 -8.43 16.71 44.97 0.75 -7.68 16 17 C 0.06 3.28 5.22 -21.26 -0.11 3.17 16 18 C -0.47 -26.29 9.30 23.43 0.22 -26.07 16 19 H 0.06 3.46 7.89 -2.91 -0.02 3.44 16 20 C 0.05 2.62 5.41 85.25 0.46 3.08 16 21 N -0.83 -43.64 13.93 21.82 0.30 -43.33 16 22 Si 0.97 40.18 24.43 68.60 1.68 41.86 16 23 H -0.24 -8.62 6.64 99.48 0.66 -7.96 16 24 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 25 H -0.26 -11.40 6.79 99.48 0.68 -10.73 16 26 C -0.25 -10.99 7.08 22.83 0.16 -10.83 16 27 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 29 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 32 H 0.06 0.91 8.10 -2.39 -0.02 0.89 16 33 H 0.05 0.90 8.10 -2.38 -0.02 0.88 16 34 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.42 7.04 7.44 -92.71 -0.69 6.35 16 37 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.43 8.82 8.82 -92.71 -0.82 8.00 16 40 H 0.13 4.73 6.43 -2.91 -0.02 4.71 16 41 H 0.14 4.84 8.06 -2.91 -0.02 4.82 16 42 H 0.30 13.93 8.30 -92.71 -0.77 13.16 16 43 H 0.12 4.92 4.18 -2.91 -0.01 4.91 16 Total: -1.00 -68.34 363.32 2.56 -65.79 By element: Atomic # 1 Polarization: 26.98 SS G_CDS: -0.52 Total: 26.46 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: 4.64 Total: -15.08 kcal Atomic # 7 Polarization: -74.78 SS G_CDS: -3.90 Total: -78.68 kcal Atomic # 8 Polarization: -32.57 SS G_CDS: -0.09 Total: -32.66 kcal Atomic # 9 Polarization: -8.43 SS G_CDS: 0.75 Total: -7.68 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 1.68 Total: 41.86 kcal Total: -68.34 2.56 -65.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183269987.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.749 kcal (2) G-P(sol) polarization free energy of solvation -68.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds