Wall clock time and date at job start Tue Mar 31 2020 13:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47179 * 2 1 4 4 C 1.53008 * 109.47294 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47294 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.47048 * 54.99723 * 5 4 3 7 7 N 1.46502 * 109.46834 * 295.00098 * 5 4 3 8 8 C 1.34774 * 119.99653 * 299.99686 * 7 5 4 9 9 O 1.21275 * 120.00665 * 0.02562 * 8 7 5 10 10 C 1.50696 * 109.46819 * 174.99779 * 5 4 3 11 11 O 1.21287 * 119.99929 * 100.00343 * 10 5 4 12 12 N 1.34772 * 120.00200 * 280.27114 * 10 5 4 13 13 C 1.40007 * 119.99891 * 174.61964 * 12 10 5 14 14 C 1.39368 * 119.91472 * 325.53730 * 13 12 10 15 15 C 1.38370 * 120.47167 * 179.76439 * 14 13 12 16 16 C 1.38006 * 120.28651 * 0.50629 * 15 14 13 17 17 F 1.35095 * 120.09451 * 179.72037 * 16 15 14 18 18 C 1.41011 * 119.81214 * 359.75343 * 16 15 14 19 19 C 1.41298 * 120.22948 * 179.97438 * 18 16 15 20 20 H 1.07999 * 119.99470 * 25.31267 * 19 18 16 21 21 C 1.39917 * 119.99752 * 205.31729 * 19 18 16 22 22 N 1.30848 * 120.00582 * 16.68309 * 21 19 18 23 23 Si 1.86804 * 119.99483 * 196.68610 * 21 19 18 24 24 H 1.48494 * 109.47283 * 90.00069 * 23 21 19 25 25 H 1.48505 * 109.46935 * 209.99916 * 23 21 19 26 26 H 1.48501 * 109.47335 * 329.99754 * 23 21 19 27 27 C 1.38147 * 119.90812 * 145.81092 * 13 12 10 28 28 H 1.09003 * 109.46551 * 60.00217 * 1 2 3 29 29 H 1.08997 * 109.46799 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47393 * 300.00188 * 1 2 3 31 31 H 1.08995 * 109.47393 * 239.99812 * 2 1 3 32 32 H 1.09005 * 109.47287 * 119.99737 * 2 1 3 33 33 H 1.08999 * 109.47348 * 60.00096 * 3 2 1 34 34 H 1.08999 * 109.47206 * 299.99899 * 3 2 1 35 35 H 1.08998 * 109.47199 * 59.99360 * 4 3 2 36 36 H 1.09003 * 109.46679 * 299.99932 * 4 3 2 37 37 H 0.96998 * 120.00087 * 120.00327 * 7 5 4 38 38 H 1.08008 * 119.99545 * 180.02562 * 8 7 5 39 39 H 0.96996 * 120.00339 * 354.62507 * 12 10 5 40 40 H 1.07997 * 119.76046 * 0.02562 * 14 13 12 41 41 H 1.08001 * 119.85451 * 180.25565 * 15 14 13 42 42 H 0.96998 * 120.00346 * 179.97438 * 22 21 19 43 43 H 1.08002 * 120.14590 * 359.95284 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 6 4.0801 2.8850 0.0013 6 1 3.6451 3.4238 0.8431 7 7 3.6930 3.5403 -1.2505 8 6 4.1181 3.0452 -2.4297 9 8 4.8206 2.0569 -2.4547 10 6 5.5819 2.8867 0.1258 11 8 6.2720 3.0400 -0.8598 12 7 6.1583 2.7124 1.3315 13 6 7.5503 2.6012 1.4324 14 6 8.2724 1.9712 0.4204 15 6 9.6489 1.8592 0.5060 16 6 10.3214 2.3618 1.6013 17 9 11.6648 2.2453 1.6835 18 6 9.6022 2.9967 2.6348 19 6 10.2817 3.5140 3.7605 20 1 11.3192 3.8026 3.6792 21 6 9.6104 3.6522 4.9802 22 7 8.4834 3.0188 5.1823 23 14 10.3231 4.7411 6.3203 24 1 9.8050 6.1238 6.1624 25 1 9.9267 4.2129 7.6504 26 1 11.8042 4.7523 6.2136 27 6 8.2038 3.1112 2.5375 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.9338 0.9285 -0.8890 36 1 3.9330 0.9288 0.8909 37 1 3.1309 4.3306 -1.2306 38 1 3.8330 3.5285 -3.3526 39 1 5.6089 2.6640 2.1294 40 1 7.7543 1.5714 -0.4387 41 1 10.1990 1.3727 -0.2860 42 1 8.0182 3.1144 6.0281 43 1 7.6434 3.5960 3.3232 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184590221.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:15 Heat of formation + Delta-G solvation = -110.689698 kcal Electronic energy + Delta-G solvation = -27106.926343 eV Core-core repulsion = 23065.864490 eV Total energy + Delta-G solvation = -4041.061853 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -47.17489 -40.42238 -38.65397 -36.97405 -36.15908 -34.33467 -34.11360 -33.29606 -31.01463 -29.76837 -28.43707 -26.70957 -25.30929 -23.18663 -22.44152 -21.60536 -21.18045 -20.37243 -19.45407 -18.53772 -17.51991 -16.97898 -16.06956 -15.82141 -15.70274 -15.35064 -15.00106 -14.66785 -14.49825 -14.07580 -13.97658 -13.90852 -13.69314 -13.37876 -13.00463 -12.90877 -12.69901 -12.60559 -12.01791 -11.97007 -11.60814 -11.48971 -11.41915 -11.26975 -11.19524 -11.07688 -10.94275 -10.75331 -10.68519 -10.25284 -9.88443 -9.62707 -9.50471 -9.33088 -9.00807 -8.67568 -7.58120 -7.01239 -6.71907 -4.45134 2.44877 2.73025 2.85387 3.03048 3.07810 3.08166 3.20268 3.33281 3.75846 3.87839 4.51719 4.60347 4.71997 4.81173 4.87897 5.08646 5.10328 5.22020 5.26100 5.44794 5.54899 5.57175 5.68169 5.72905 5.87619 5.99668 6.01756 6.09403 6.14819 6.24774 6.39844 6.60524 6.73886 6.86928 6.90123 7.11617 7.47315 7.51081 7.59553 7.68965 7.91224 7.99566 8.21559 8.34808 8.47202 8.70263 8.71983 8.84787 10.08104 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014845 B = 0.003239 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.663723 B = 8643.041316 C = 9663.078752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.111 4.111 4 C -0.133 4.133 5 C 0.133 3.867 6 H 0.103 0.897 7 N -0.728 5.728 8 C 0.493 3.507 9 O -0.518 6.518 10 C 0.493 3.507 11 O -0.496 6.496 12 N -0.666 5.666 13 C 0.144 3.856 14 C -0.203 4.203 15 C -0.113 4.113 16 C -0.033 4.033 17 F -0.163 7.163 18 C 0.098 3.902 19 C -0.454 4.454 20 H 0.083 0.917 21 C 0.077 3.923 22 N -0.795 5.795 23 Si 0.913 3.087 24 H -0.267 1.267 25 H -0.277 1.277 26 H -0.261 1.261 27 C -0.166 4.166 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.093 0.907 36 H 0.075 0.925 37 H 0.402 0.598 38 H 0.124 0.876 39 H 0.401 0.599 40 H 0.112 0.888 41 H 0.104 0.896 42 H 0.281 0.719 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.790 0.897 -5.479 18.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C -0.149 4.149 4 C -0.172 4.172 5 C 0.023 3.977 6 H 0.121 0.879 7 N -0.384 5.384 8 C 0.261 3.739 9 O -0.389 6.389 10 C 0.277 3.723 11 O -0.368 6.368 12 N -0.311 5.311 13 C 0.052 3.948 14 C -0.224 4.224 15 C -0.132 4.132 16 C -0.054 4.054 17 F -0.143 7.143 18 C 0.094 3.906 19 C -0.483 4.483 20 H 0.101 0.899 21 C -0.141 4.141 22 N -0.420 5.420 23 Si 0.737 3.263 24 H -0.192 1.192 25 H -0.202 1.202 26 H -0.185 1.185 27 C -0.188 4.188 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.111 0.889 36 H 0.094 0.906 37 H 0.236 0.764 38 H 0.140 0.860 39 H 0.235 0.765 40 H 0.130 0.870 41 H 0.122 0.878 42 H 0.092 0.908 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -16.921 0.199 -6.106 17.990 hybrid contribution -0.075 0.868 1.179 1.466 sum -16.996 1.067 -4.927 17.728 Atomic orbital electron populations 1.21765 0.96000 1.01488 1.01595 1.21526 0.95607 0.96945 1.02307 1.21549 0.94579 0.96923 1.01852 1.21958 0.95793 0.94489 1.04962 1.20850 0.92366 0.96159 0.88319 0.87882 1.46188 1.54132 1.32286 1.05759 1.22413 0.79419 0.85451 0.86624 1.90723 1.34368 1.26431 1.87400 1.20811 0.90290 0.77567 0.83599 1.90750 1.64012 1.45708 1.36372 1.43443 1.06731 1.72148 1.08803 1.17565 0.80885 0.99521 0.96830 1.20172 0.92776 1.08639 1.00778 1.20389 0.94355 1.01837 0.96663 1.17913 0.76637 1.10647 1.00169 1.91265 1.31003 1.95170 1.96826 1.17345 0.91587 0.90248 0.91428 1.19482 0.98855 1.36650 0.93328 0.89856 1.25877 0.94398 0.94027 0.99747 1.69806 1.14741 1.32278 1.25184 0.86229 0.80674 0.80437 0.78970 1.19209 1.20208 1.18463 1.20881 0.94144 1.05540 0.98199 0.92935 0.92900 0.92804 0.91999 0.91874 0.92079 0.91970 0.88897 0.90637 0.76377 0.86032 0.76451 0.86979 0.87826 0.90796 0.85265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 37.16 0.37 -0.70 16 2 C -0.13 -1.06 5.93 -26.73 -0.16 -1.22 16 3 C -0.11 -0.92 5.10 -26.73 -0.14 -1.06 16 4 C -0.13 -1.49 4.54 -26.73 -0.12 -1.61 16 5 C 0.13 1.52 3.01 -69.08 -0.21 1.31 16 6 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 7 N -0.73 -6.96 4.66 -59.27 -0.28 -7.24 16 8 C 0.49 5.89 11.40 54.05 0.62 6.51 16 9 O -0.52 -9.12 13.03 -17.92 -0.23 -9.35 16 10 C 0.49 8.52 6.55 -10.99 -0.07 8.45 16 11 O -0.50 -10.72 11.43 -17.94 -0.20 -10.93 16 12 N -0.67 -12.04 5.33 -9.90 -0.05 -12.09 16 13 C 0.14 3.32 6.25 -83.74 -0.52 2.80 16 14 C -0.20 -4.90 8.66 -39.11 -0.34 -5.24 16 15 C -0.11 -2.77 10.00 -39.62 -0.40 -3.17 16 16 C -0.03 -0.88 7.31 -38.62 -0.28 -1.16 16 17 F -0.16 -4.29 16.72 2.25 0.04 -4.25 16 18 C 0.10 2.64 5.57 -106.78 -0.60 2.05 16 19 C -0.45 -12.16 8.77 -37.79 -0.33 -12.49 16 20 H 0.08 2.23 7.74 -52.49 -0.41 1.82 16 21 C 0.08 1.89 5.16 -17.34 -0.09 1.80 16 22 N -0.79 -19.43 10.94 55.55 0.61 -18.82 16 23 Si 0.91 18.37 29.59 -169.99 -5.03 13.34 16 24 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 25 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 26 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 27 C -0.17 -4.14 8.59 -38.71 -0.33 -4.47 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.49 7.75 -51.93 -0.40 0.09 16 35 H 0.09 1.33 6.05 -51.93 -0.31 1.02 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.40 2.26 8.94 -40.82 -0.36 1.90 16 38 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 39 H 0.40 5.94 8.82 -40.82 -0.36 5.58 16 40 H 0.11 2.76 6.47 -52.49 -0.34 2.42 16 41 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 42 H 0.28 6.19 8.30 -40.82 -0.34 5.85 16 43 H 0.13 3.19 6.18 -52.49 -0.32 2.87 16 LS Contribution 361.26 15.07 5.44 5.44 Total: -1.00 -33.83 361.26 -8.18 -42.01 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -5.87 Total: 10.09 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: -2.60 Total: -8.20 kcal Atomic # 7 Polarization: -38.44 SS G_CDS: 0.28 Total: -38.16 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.44 Total: -20.28 kcal Atomic # 9 Polarization: -4.29 SS G_CDS: 0.04 Total: -4.25 kcal Atomic # 14 Polarization: 18.37 SS G_CDS: -5.03 Total: 13.34 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.83 -8.18 -42.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184590221.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.682 kcal (2) G-P(sol) polarization free energy of solvation -33.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds