Wall clock time and date at job start Tue Mar 31 2020 13:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47179 * 2 1 4 4 C 1.53008 * 109.47294 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47294 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.47048 * 54.99723 * 5 4 3 7 7 N 1.46502 * 109.46834 * 295.00098 * 5 4 3 8 8 C 1.34774 * 119.99653 * 299.99686 * 7 5 4 9 9 O 1.21275 * 120.00665 * 0.02562 * 8 7 5 10 10 C 1.50696 * 109.46819 * 174.99779 * 5 4 3 11 11 O 1.21287 * 119.99929 * 100.00343 * 10 5 4 12 12 N 1.34772 * 120.00200 * 280.27114 * 10 5 4 13 13 C 1.40007 * 119.99891 * 174.61964 * 12 10 5 14 14 C 1.39368 * 119.91472 * 325.53730 * 13 12 10 15 15 C 1.38370 * 120.47167 * 179.76439 * 14 13 12 16 16 C 1.38006 * 120.28651 * 0.50629 * 15 14 13 17 17 F 1.35095 * 120.09451 * 179.72037 * 16 15 14 18 18 C 1.41011 * 119.81214 * 359.75343 * 16 15 14 19 19 C 1.41298 * 120.22948 * 179.97438 * 18 16 15 20 20 H 1.07999 * 119.99470 * 25.31267 * 19 18 16 21 21 C 1.39917 * 119.99752 * 205.31729 * 19 18 16 22 22 N 1.30848 * 120.00582 * 16.68309 * 21 19 18 23 23 Si 1.86804 * 119.99483 * 196.68610 * 21 19 18 24 24 H 1.48494 * 109.47283 * 90.00069 * 23 21 19 25 25 H 1.48505 * 109.46935 * 209.99916 * 23 21 19 26 26 H 1.48501 * 109.47335 * 329.99754 * 23 21 19 27 27 C 1.38147 * 119.90812 * 145.81092 * 13 12 10 28 28 H 1.09003 * 109.46551 * 60.00217 * 1 2 3 29 29 H 1.08997 * 109.46799 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47393 * 300.00188 * 1 2 3 31 31 H 1.08995 * 109.47393 * 239.99812 * 2 1 3 32 32 H 1.09005 * 109.47287 * 119.99737 * 2 1 3 33 33 H 1.08999 * 109.47348 * 60.00096 * 3 2 1 34 34 H 1.08999 * 109.47206 * 299.99899 * 3 2 1 35 35 H 1.08998 * 109.47199 * 59.99360 * 4 3 2 36 36 H 1.09003 * 109.46679 * 299.99932 * 4 3 2 37 37 H 0.96998 * 120.00087 * 120.00327 * 7 5 4 38 38 H 1.08008 * 119.99545 * 180.02562 * 8 7 5 39 39 H 0.96996 * 120.00339 * 354.62507 * 12 10 5 40 40 H 1.07997 * 119.76046 * 0.02562 * 14 13 12 41 41 H 1.08001 * 119.85451 * 180.25565 * 15 14 13 42 42 H 0.96998 * 120.00346 * 179.97438 * 22 21 19 43 43 H 1.08002 * 120.14590 * 359.95284 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 6 4.0801 2.8850 0.0013 6 1 3.6451 3.4238 0.8431 7 7 3.6930 3.5403 -1.2505 8 6 4.1181 3.0452 -2.4297 9 8 4.8206 2.0569 -2.4547 10 6 5.5819 2.8867 0.1258 11 8 6.2720 3.0400 -0.8598 12 7 6.1583 2.7124 1.3315 13 6 7.5503 2.6012 1.4324 14 6 8.2724 1.9712 0.4204 15 6 9.6489 1.8592 0.5060 16 6 10.3214 2.3618 1.6013 17 9 11.6648 2.2453 1.6835 18 6 9.6022 2.9967 2.6348 19 6 10.2817 3.5140 3.7605 20 1 11.3192 3.8026 3.6792 21 6 9.6104 3.6522 4.9802 22 7 8.4834 3.0188 5.1823 23 14 10.3231 4.7411 6.3203 24 1 9.8050 6.1238 6.1624 25 1 9.9267 4.2129 7.6504 26 1 11.8042 4.7523 6.2136 27 6 8.2038 3.1112 2.5375 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.9338 0.9285 -0.8890 36 1 3.9330 0.9288 0.8909 37 1 3.1309 4.3306 -1.2306 38 1 3.8330 3.5285 -3.3526 39 1 5.6089 2.6640 2.1294 40 1 7.7543 1.5714 -0.4387 41 1 10.1990 1.3727 -0.2860 42 1 8.0182 3.1144 6.0281 43 1 7.6434 3.5960 3.3232 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184590221.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:14 Heat of formation + Delta-G solvation = -132.280546 kcal Electronic energy + Delta-G solvation = -27107.862593 eV Core-core repulsion = 23065.864490 eV Total energy + Delta-G solvation = -4041.998103 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.21516 -41.67966 -40.01964 -38.63910 -37.06418 -36.00952 -35.08893 -35.03898 -31.92433 -31.70614 -30.01614 -27.80851 -27.21731 -24.02527 -23.75044 -23.46068 -22.20400 -21.67910 -20.82527 -19.55899 -19.22326 -18.40048 -18.00392 -17.37085 -17.01972 -16.56108 -16.35075 -16.17408 -16.00178 -15.68505 -15.38852 -14.93306 -14.80909 -14.63416 -14.45789 -14.20173 -13.96527 -13.94754 -13.53909 -13.44900 -13.36007 -12.95540 -12.80111 -12.69821 -12.46853 -12.17248 -12.04844 -11.99316 -11.74401 -11.54895 -11.42434 -11.20648 -11.08129 -10.70781 -10.52624 -9.86533 -9.55692 -8.87510 -8.57858 -6.45811 0.61989 0.84081 1.39377 1.46715 1.52013 1.73347 1.89479 2.20266 2.28888 2.60889 2.66129 3.46382 3.66058 3.88476 3.96954 4.01004 4.17619 4.20540 4.27223 4.37962 4.47910 4.57463 4.64583 4.84378 4.88987 4.91741 5.00022 5.02337 5.03428 5.05591 5.22510 5.24003 5.34799 5.41948 5.52352 5.55516 5.61220 5.74367 5.76311 5.94611 6.12281 6.46290 6.69047 6.71744 6.74059 6.81400 7.33622 7.55163 8.24490 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014845 B = 0.003239 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.663723 B = 8643.041316 C = 9663.078752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.129 4.129 3 C -0.101 4.101 4 C -0.127 4.127 5 C 0.142 3.858 6 H 0.149 0.851 7 N -0.711 5.711 8 C 0.487 3.513 9 O -0.579 6.579 10 C 0.487 3.513 11 O -0.540 6.540 12 N -0.660 5.660 13 C 0.158 3.842 14 C -0.214 4.214 15 C -0.110 4.110 16 C -0.071 4.071 17 F -0.170 7.170 18 C 0.074 3.926 19 C -0.490 4.490 20 H 0.070 0.930 21 C 0.043 3.957 22 N -0.808 5.808 23 Si 0.986 3.014 24 H -0.256 1.256 25 H -0.260 1.260 26 H -0.268 1.268 27 C -0.177 4.177 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.045 0.955 32 H 0.058 0.942 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.426 0.574 38 H 0.171 0.829 39 H 0.418 0.582 40 H 0.106 0.894 41 H 0.120 0.880 42 H 0.296 0.704 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.693 2.437 -4.157 21.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.167 4.167 3 C -0.138 4.138 4 C -0.166 4.166 5 C 0.032 3.968 6 H 0.166 0.834 7 N -0.368 5.368 8 C 0.256 3.744 9 O -0.455 6.455 10 C 0.274 3.726 11 O -0.415 6.415 12 N -0.307 5.307 13 C 0.064 3.936 14 C -0.235 4.235 15 C -0.130 4.130 16 C -0.092 4.092 17 F -0.149 7.149 18 C 0.070 3.930 19 C -0.518 4.518 20 H 0.088 0.912 21 C -0.174 4.174 22 N -0.433 5.433 23 Si 0.806 3.194 24 H -0.181 1.181 25 H -0.184 1.184 26 H -0.192 1.192 27 C -0.199 4.199 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.103 0.897 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.264 0.736 38 H 0.187 0.813 39 H 0.256 0.744 40 H 0.124 0.876 41 H 0.138 0.862 42 H 0.107 0.893 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -19.914 1.766 -4.777 20.555 hybrid contribution 0.762 0.352 0.731 1.113 sum -19.153 2.118 -4.046 19.689 Atomic orbital electron populations 1.21735 0.94644 1.01828 1.02300 1.21535 0.96771 0.97001 1.01368 1.21492 0.91944 0.97065 1.03333 1.21880 0.97941 0.93713 1.03070 1.20897 0.87822 0.97367 0.90733 0.83373 1.46118 1.53458 1.32665 1.04604 1.23337 0.78117 0.84506 0.88408 1.90719 1.37277 1.29233 1.88277 1.21992 0.92778 0.75606 0.82225 1.90735 1.65717 1.47367 1.37667 1.43460 1.04838 1.72004 1.10379 1.17586 0.83332 0.97309 0.95381 1.20220 0.92765 1.09427 1.01085 1.20595 0.94760 1.01117 0.96520 1.18138 0.76695 1.12883 1.01437 1.91224 1.31321 1.95412 1.96951 1.17743 0.92837 0.90513 0.91878 1.19647 0.98812 1.38596 0.94779 0.91184 1.26669 0.94723 0.94735 1.01232 1.69794 1.15129 1.31829 1.26507 0.85150 0.79301 0.78684 0.76282 1.18071 1.18372 1.19210 1.20853 0.93524 1.06548 0.98977 0.92420 0.92858 0.91839 0.93617 0.92306 0.89748 0.91142 0.92426 0.91073 0.73586 0.81345 0.74403 0.87575 0.86191 0.89326 0.85110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.91 71.98 0.71 -1.03 16 2 C -0.13 -1.97 5.93 30.59 0.18 -1.79 16 3 C -0.10 -1.39 5.10 30.60 0.16 -1.23 16 4 C -0.13 -2.65 4.54 30.60 0.14 -2.51 16 5 C 0.14 2.88 3.01 44.24 0.13 3.01 16 6 H 0.15 1.74 8.14 -2.39 -0.02 1.72 16 7 N -0.71 -11.57 4.66 -459.83 -2.14 -13.71 16 8 C 0.49 10.84 11.40 129.79 1.48 12.32 16 9 O -0.58 -20.62 13.03 19.44 0.25 -20.36 16 10 C 0.49 16.43 6.55 87.66 0.57 17.00 16 11 O -0.54 -23.53 11.43 19.40 0.22 -23.31 16 12 N -0.66 -23.38 5.33 -303.62 -1.62 -25.00 16 13 C 0.16 7.36 6.25 38.09 0.24 7.60 16 14 C -0.21 -10.63 8.66 22.57 0.20 -10.44 16 15 C -0.11 -5.62 10.00 22.25 0.22 -5.40 16 16 C -0.07 -3.92 7.31 22.89 0.17 -3.76 16 17 F -0.17 -9.31 16.72 44.97 0.75 -8.55 16 18 C 0.07 4.13 5.57 -21.26 -0.12 4.01 16 19 C -0.49 -26.90 8.77 23.43 0.21 -26.70 16 20 H 0.07 3.90 7.74 -2.91 -0.02 3.88 16 21 C 0.04 2.11 5.16 85.25 0.44 2.55 16 22 N -0.81 -38.83 10.94 21.82 0.24 -38.60 16 23 Si 0.99 36.86 29.59 68.60 2.03 38.89 16 24 H -0.26 -9.13 7.11 99.48 0.71 -8.42 16 25 H -0.26 -8.95 7.11 99.48 0.71 -8.24 16 26 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 27 C -0.18 -8.97 8.59 22.84 0.20 -8.78 16 28 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 33 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.07 0.88 7.75 -2.39 -0.02 0.86 16 35 H 0.06 1.67 6.05 -2.39 -0.01 1.65 16 36 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.43 3.00 8.94 -92.71 -0.83 2.18 16 38 H 0.17 2.05 8.06 -2.91 -0.02 2.03 16 39 H 0.42 11.69 8.82 -92.71 -0.82 10.87 16 40 H 0.11 5.41 6.47 -2.91 -0.02 5.39 16 41 H 0.12 5.51 8.06 -2.91 -0.02 5.49 16 42 H 0.30 12.48 8.30 -92.71 -0.77 11.71 16 43 H 0.13 6.47 6.18 -2.91 -0.02 6.45 16 Total: -1.00 -77.99 361.26 4.07 -73.92 By element: Atomic # 1 Polarization: 32.46 SS G_CDS: -0.59 Total: 31.87 kcal Atomic # 6 Polarization: -20.07 SS G_CDS: 4.92 Total: -15.15 kcal Atomic # 7 Polarization: -73.78 SS G_CDS: -3.52 Total: -77.30 kcal Atomic # 8 Polarization: -44.15 SS G_CDS: 0.48 Total: -43.67 kcal Atomic # 9 Polarization: -9.31 SS G_CDS: 0.75 Total: -8.55 kcal Atomic # 14 Polarization: 36.86 SS G_CDS: 2.03 Total: 38.89 kcal Total: -77.99 4.07 -73.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184590221.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.360 kcal (2) G-P(sol) polarization free energy of solvation -77.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds