Wall clock time and date at job start Tue Mar 31 2020 14:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.47008 * 2 1 4 4 C 1.53000 * 109.47585 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47636 * 179.97438 * 4 3 2 6 6 C 1.36911 * 119.99582 * 95.15616 * 5 4 3 7 7 H 1.08009 * 119.99599 * 220.62651 * 6 5 4 8 8 C 1.39008 * 120.00200 * 40.35186 * 6 5 4 9 9 N 1.31390 * 120.00069 * 15.16501 * 8 6 5 10 10 Si 1.86801 * 120.00099 * 195.15668 * 8 6 5 11 11 H 1.48500 * 109.46802 * 60.00346 * 10 8 6 12 12 H 1.48497 * 109.47135 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.47251 * 300.00450 * 10 8 6 14 14 C 1.34773 * 120.00005 * 275.15637 * 5 4 3 15 15 O 1.21642 * 119.99922 * 355.11070 * 14 5 4 16 16 C 1.47295 * 119.99773 * 175.10769 * 14 5 4 17 17 C 1.39818 * 120.17500 * 60.47993 * 16 14 5 18 18 C 1.37679 * 119.93742 * 179.76025 * 17 16 14 19 19 C 1.38872 * 120.30764 * 0.51594 * 18 17 16 20 20 F 1.35102 * 119.81913 * 179.75923 * 19 18 17 21 21 C 1.38330 * 120.36432 * 359.73982 * 19 18 17 22 22 C 1.38707 * 120.04956 * 359.97438 * 21 19 18 23 23 N 1.39298 * 120.15292 * 179.97438 * 22 21 19 24 24 C 1.34775 * 119.99916 * 33.10665 * 23 22 21 25 25 C 1.50701 * 119.99922 * 184.36278 * 24 23 22 26 26 O 1.21282 * 119.99937 * 4.36172 * 24 23 22 27 27 H 1.09005 * 109.46684 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47347 * 299.99713 * 1 2 3 29 29 H 1.08989 * 109.46997 * 60.00160 * 1 2 3 30 30 H 1.08997 * 109.47182 * 239.99757 * 2 1 3 31 31 H 1.09001 * 109.46636 * 119.99727 * 2 1 3 32 32 H 1.09007 * 109.47380 * 60.00079 * 3 2 1 33 33 H 1.09000 * 109.47392 * 300.00142 * 3 2 1 34 34 H 1.08997 * 109.46733 * 59.99679 * 4 3 2 35 35 H 1.09000 * 109.47032 * 300.00559 * 4 3 2 36 36 H 0.96995 * 120.00003 * 179.97438 * 9 8 6 37 37 H 1.07995 * 120.02978 * 0.02562 * 17 16 14 38 38 H 1.07996 * 119.84568 * 180.25214 * 18 17 16 39 39 H 1.07996 * 119.97179 * 180.02562 * 21 19 18 40 40 H 0.96996 * 120.00259 * 213.10968 * 23 22 21 41 41 H 1.09000 * 109.47174 * 60.00212 * 25 24 23 42 42 H 1.09004 * 109.47005 * 179.97438 * 25 24 23 43 43 H 1.08999 * 109.46929 * 299.99623 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.3865 3.4343 1.1807 7 1 4.1189 4.4675 1.3470 8 6 5.0588 2.7229 2.1677 9 7 5.6399 1.5815 1.8745 10 14 5.1364 3.3897 3.9110 11 1 3.7593 3.5336 4.4476 12 1 5.9058 2.4508 4.7663 13 1 5.8062 4.7151 3.9047 14 6 4.1845 3.4934 -1.1628 15 8 3.9786 2.9242 -2.2179 16 6 4.5718 4.9145 -1.1559 17 6 5.7964 5.3066 -0.6067 18 6 6.1556 6.6357 -0.6073 19 6 5.3023 7.5921 -1.1418 20 9 5.6626 8.8941 -1.1329 21 6 4.0855 7.2188 -1.6837 22 6 3.7110 5.8833 -1.6962 23 7 2.4860 5.5052 -2.2408 24 6 1.9748 6.1848 -3.2864 25 6 0.6058 5.8392 -3.8130 26 8 2.6167 7.0745 -3.8036 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9337 0.9286 -0.8891 35 1 3.9330 0.9289 0.8908 36 1 6.1093 1.0853 2.5631 37 1 6.4616 4.5671 -0.1862 38 1 7.1036 6.9364 -0.1863 39 1 3.4269 7.9678 -2.0980 40 1 2.0008 4.7528 -1.8676 41 1 -0.1327 5.9768 -3.0232 42 1 0.3645 6.4906 -4.6530 43 1 0.5952 4.8005 -4.1435 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186419895.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:29 Heat of formation + Delta-G solvation = -100.495260 kcal Electronic energy + Delta-G solvation = -28021.343506 eV Core-core repulsion = 23980.723716 eV Total energy + Delta-G solvation = -4040.619789 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.56520 -40.44062 -38.91097 -37.42150 -35.42233 -34.52739 -34.04397 -31.65482 -30.82331 -30.40826 -28.66845 -28.08743 -25.07303 -23.77646 -23.01553 -22.03626 -20.57378 -20.34124 -19.44000 -18.13575 -17.52897 -16.96113 -16.14944 -15.82669 -15.52255 -15.22258 -15.01668 -14.86051 -14.77478 -14.61695 -14.01361 -13.81184 -13.50829 -13.17709 -13.13561 -12.78574 -12.67942 -12.36361 -12.28172 -12.18138 -12.13505 -11.76259 -11.50861 -11.28954 -11.21178 -11.01489 -10.70419 -10.62131 -10.45840 -10.36653 -10.15034 -9.88058 -9.73681 -9.23501 -8.72851 -8.31203 -7.82412 -7.64005 -6.50322 -4.25969 1.34484 1.61450 2.70319 3.04532 3.13286 3.14802 3.21965 3.57605 3.97899 4.08855 4.54086 4.58968 4.82688 4.85094 5.19115 5.26972 5.32124 5.35085 5.37515 5.39462 5.54893 5.66616 5.77485 5.81596 5.83889 5.95714 6.14686 6.22768 6.26671 6.36364 6.41232 6.51392 6.56565 6.60483 6.64381 6.68744 6.83245 6.98600 7.23033 7.27545 7.36024 7.52996 7.79262 8.19552 8.22801 8.90432 9.29459 9.72971 10.50763 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.009346 B = 0.005949 C = 0.004015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2995.355693 B = 4705.454085 C = 6972.529020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.128 4.128 4 C 0.114 3.886 5 N -0.423 5.423 6 C -0.342 4.342 7 H 0.089 0.911 8 C 0.049 3.951 9 N -0.859 5.859 10 Si 0.913 3.087 11 H -0.272 1.272 12 H -0.283 1.283 13 H -0.269 1.269 14 C 0.505 3.495 15 O -0.593 6.593 16 C -0.113 4.113 17 C -0.018 4.018 18 C -0.178 4.178 19 C 0.114 3.886 20 F -0.143 7.143 21 C -0.169 4.169 22 C 0.197 3.803 23 N -0.659 5.659 24 C 0.512 3.488 25 C -0.172 4.172 26 O -0.531 6.531 27 H 0.047 0.953 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.050 0.950 34 H 0.055 0.945 35 H 0.107 0.893 36 H 0.272 0.728 37 H 0.147 0.853 38 H 0.134 0.866 39 H 0.144 0.856 40 H 0.416 0.584 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.415 3.052 -1.650 8.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.167 4.167 4 C -0.009 4.009 5 N -0.139 5.139 6 C -0.470 4.470 7 H 0.107 0.893 8 C -0.158 4.158 9 N -0.495 5.495 10 Si 0.739 3.261 11 H -0.197 1.197 12 H -0.208 1.208 13 H -0.194 1.194 14 C 0.293 3.707 15 O -0.479 6.479 16 C -0.118 4.118 17 C -0.037 4.037 18 C -0.198 4.198 19 C 0.094 3.906 20 F -0.122 7.122 21 C -0.190 4.190 22 C 0.101 3.899 23 N -0.303 5.303 24 C 0.301 3.699 25 C -0.232 4.232 26 O -0.408 6.408 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.125 0.875 36 H 0.083 0.917 37 H 0.165 0.835 38 H 0.152 0.848 39 H 0.161 0.839 40 H 0.252 0.748 41 H 0.109 0.891 42 H 0.113 0.887 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.016 3.254 -2.443 8.110 hybrid contribution -0.015 0.089 1.276 1.279 sum -7.031 3.343 -1.167 7.872 Atomic orbital electron populations 1.21757 0.96580 1.00801 1.01422 1.21423 0.94988 0.97585 1.01762 1.21921 0.97844 0.95750 1.01142 1.21461 0.90937 0.84666 1.03821 1.43391 1.54061 1.11787 1.04651 1.19368 1.37086 0.98248 0.92280 0.89329 1.25396 0.94052 0.96096 1.00254 1.69854 1.30400 1.14895 1.34303 0.86211 0.78736 0.79088 0.82072 1.19723 1.20784 1.19426 1.18120 0.81874 0.86185 0.84480 1.90675 1.56484 1.69543 1.31208 1.19921 0.95064 0.94014 1.02833 1.21023 0.94915 0.94931 0.92842 1.21004 1.00925 0.92839 1.05010 1.17518 0.94451 0.77937 1.00722 1.91458 1.91860 1.34189 1.94696 1.20774 0.97674 0.95565 1.05025 1.17226 0.86092 0.91297 0.95277 1.43346 1.19895 1.34440 1.32575 1.20957 0.88752 0.81449 0.78738 1.21911 0.93135 1.04834 1.03280 1.90720 1.61447 1.31111 1.57495 0.93361 0.93025 0.93110 0.92326 0.92146 0.92203 0.93164 0.92699 0.87529 0.91736 0.83530 0.84789 0.83852 0.74762 0.89107 0.88703 0.88869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.91 37.16 0.37 -1.47 16 2 C -0.12 -1.79 5.93 -26.73 -0.16 -1.95 16 3 C -0.13 -2.29 5.50 -26.73 -0.15 -2.44 16 4 C 0.11 2.48 4.91 -4.04 -0.02 2.46 16 5 N -0.42 -9.64 2.51 -116.08 -0.29 -9.93 16 6 C -0.34 -7.87 7.51 -15.00 -0.11 -7.99 16 7 H 0.09 2.02 7.19 -52.48 -0.38 1.64 16 8 C 0.05 1.13 5.04 -17.46 -0.09 1.04 16 9 N -0.86 -20.90 11.35 55.50 0.63 -20.27 16 10 Si 0.91 18.25 29.58 -169.99 -5.03 13.22 16 11 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 12 H -0.28 -5.69 7.11 56.52 0.40 -5.28 16 13 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 14 C 0.51 11.48 6.14 -12.58 -0.08 11.41 16 15 O -0.59 -14.68 16.61 5.24 0.09 -14.59 16 16 C -0.11 -2.32 4.71 -104.81 -0.49 -2.81 16 17 C -0.02 -0.34 8.39 -39.19 -0.33 -0.67 16 18 C -0.18 -3.03 10.00 -39.55 -0.40 -3.42 16 19 C 0.11 1.99 7.30 -39.31 -0.29 1.71 16 20 F -0.14 -2.42 17.26 2.25 0.04 -2.38 16 21 C -0.17 -3.08 8.62 -39.37 -0.34 -3.42 16 22 C 0.20 3.74 6.30 -83.48 -0.53 3.21 16 23 N -0.66 -10.89 4.94 -9.68 -0.05 -10.94 16 24 C 0.51 7.86 7.69 -10.99 -0.08 7.78 16 25 C -0.17 -1.71 10.32 36.01 0.37 -1.34 16 26 O -0.53 -9.95 14.71 5.56 0.08 -9.87 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.60 8.14 -51.94 -0.42 0.18 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.05 1.26 7.51 -51.93 -0.39 0.87 16 35 H 0.11 2.47 5.57 -51.93 -0.29 2.18 16 36 H 0.27 6.33 8.31 -40.82 -0.34 5.99 16 37 H 0.15 2.89 7.80 -52.49 -0.41 2.48 16 38 H 0.13 1.92 8.06 -52.49 -0.42 1.50 16 39 H 0.14 2.58 6.36 -52.49 -0.33 2.24 16 40 H 0.42 6.40 8.12 -40.82 -0.33 6.07 16 41 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.09 0.86 8.12 -51.93 -0.42 0.44 16 43 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 366.86 15.07 5.53 5.53 Total: -1.00 -28.53 366.86 -7.23 -35.76 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -5.91 Total: 11.39 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: -2.32 Total: 2.09 kcal Atomic # 7 Polarization: -41.43 SS G_CDS: 0.29 Total: -41.14 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: 0.17 Total: -24.46 kcal Atomic # 9 Polarization: -2.42 SS G_CDS: 0.04 Total: -2.38 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.22 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -28.53 -7.23 -35.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186419895.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.734 kcal (2) G-P(sol) polarization free energy of solvation -28.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds