Wall clock time and date at job start Tue Mar 31 2020 14:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.47008 * 2 1 4 4 C 1.53000 * 109.47585 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47636 * 179.97438 * 4 3 2 6 6 C 1.36911 * 119.99582 * 95.15616 * 5 4 3 7 7 H 1.08009 * 119.99599 * 220.62651 * 6 5 4 8 8 C 1.39008 * 120.00200 * 40.35186 * 6 5 4 9 9 N 1.31390 * 120.00069 * 15.16501 * 8 6 5 10 10 Si 1.86801 * 120.00099 * 195.15668 * 8 6 5 11 11 H 1.48500 * 109.46802 * 60.00346 * 10 8 6 12 12 H 1.48497 * 109.47135 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.47251 * 300.00450 * 10 8 6 14 14 C 1.34773 * 120.00005 * 275.15637 * 5 4 3 15 15 O 1.21642 * 119.99922 * 355.11070 * 14 5 4 16 16 C 1.47295 * 119.99773 * 175.10769 * 14 5 4 17 17 C 1.39818 * 120.17500 * 60.47993 * 16 14 5 18 18 C 1.37679 * 119.93742 * 179.76025 * 17 16 14 19 19 C 1.38872 * 120.30764 * 0.51594 * 18 17 16 20 20 F 1.35102 * 119.81913 * 179.75923 * 19 18 17 21 21 C 1.38330 * 120.36432 * 359.73982 * 19 18 17 22 22 C 1.38707 * 120.04956 * 359.97438 * 21 19 18 23 23 N 1.39298 * 120.15292 * 179.97438 * 22 21 19 24 24 C 1.34775 * 119.99916 * 33.10665 * 23 22 21 25 25 C 1.50701 * 119.99922 * 184.36278 * 24 23 22 26 26 O 1.21282 * 119.99937 * 4.36172 * 24 23 22 27 27 H 1.09005 * 109.46684 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47347 * 299.99713 * 1 2 3 29 29 H 1.08989 * 109.46997 * 60.00160 * 1 2 3 30 30 H 1.08997 * 109.47182 * 239.99757 * 2 1 3 31 31 H 1.09001 * 109.46636 * 119.99727 * 2 1 3 32 32 H 1.09007 * 109.47380 * 60.00079 * 3 2 1 33 33 H 1.09000 * 109.47392 * 300.00142 * 3 2 1 34 34 H 1.08997 * 109.46733 * 59.99679 * 4 3 2 35 35 H 1.09000 * 109.47032 * 300.00559 * 4 3 2 36 36 H 0.96995 * 120.00003 * 179.97438 * 9 8 6 37 37 H 1.07995 * 120.02978 * 0.02562 * 17 16 14 38 38 H 1.07996 * 119.84568 * 180.25214 * 18 17 16 39 39 H 1.07996 * 119.97179 * 180.02562 * 21 19 18 40 40 H 0.96996 * 120.00259 * 213.10968 * 23 22 21 41 41 H 1.09000 * 109.47174 * 60.00212 * 25 24 23 42 42 H 1.09004 * 109.47005 * 179.97438 * 25 24 23 43 43 H 1.08999 * 109.46929 * 299.99623 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.3865 3.4343 1.1807 7 1 4.1189 4.4675 1.3470 8 6 5.0588 2.7229 2.1677 9 7 5.6399 1.5815 1.8745 10 14 5.1364 3.3897 3.9110 11 1 3.7593 3.5336 4.4476 12 1 5.9058 2.4508 4.7663 13 1 5.8062 4.7151 3.9047 14 6 4.1845 3.4934 -1.1628 15 8 3.9786 2.9242 -2.2179 16 6 4.5718 4.9145 -1.1559 17 6 5.7964 5.3066 -0.6067 18 6 6.1556 6.6357 -0.6073 19 6 5.3023 7.5921 -1.1418 20 9 5.6626 8.8941 -1.1329 21 6 4.0855 7.2188 -1.6837 22 6 3.7110 5.8833 -1.6962 23 7 2.4860 5.5052 -2.2408 24 6 1.9748 6.1848 -3.2864 25 6 0.6058 5.8392 -3.8130 26 8 2.6167 7.0745 -3.8036 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9337 0.9286 -0.8891 35 1 3.9330 0.9289 0.8908 36 1 6.1093 1.0853 2.5631 37 1 6.4616 4.5671 -0.1862 38 1 7.1036 6.9364 -0.1863 39 1 3.4269 7.9678 -2.0980 40 1 2.0008 4.7528 -1.8676 41 1 -0.1327 5.9768 -3.0232 42 1 0.3645 6.4906 -4.6530 43 1 0.5952 4.8005 -4.1435 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186419895.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:28 Heat of formation + Delta-G solvation = -115.551724 kcal Electronic energy + Delta-G solvation = -28021.996403 eV Core-core repulsion = 23980.723716 eV Total energy + Delta-G solvation = -4041.272686 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.96075 -41.84789 -40.48790 -38.92904 -37.10976 -35.87954 -35.51763 -33.43698 -32.09183 -31.79059 -29.95469 -29.41652 -26.85533 -25.24681 -24.40437 -23.46870 -21.93885 -21.63729 -21.17282 -19.63630 -19.06794 -18.24474 -17.86000 -17.21181 -16.95127 -16.61495 -16.50151 -16.43244 -16.18783 -16.06731 -15.52775 -15.30567 -14.94127 -14.59458 -14.47294 -14.13194 -13.83419 -13.70917 -13.68784 -13.45493 -13.31047 -13.10311 -13.02851 -12.90048 -12.77219 -12.50018 -12.15622 -12.04371 -11.92660 -11.78930 -11.52567 -11.39369 -11.05480 -10.97633 -10.51129 -9.80382 -9.45319 -9.25025 -8.28781 -6.09917 -0.12410 0.16350 1.44465 1.48131 1.50472 1.57346 1.88899 1.98663 2.30698 2.57027 2.89188 3.07973 3.19268 3.66464 3.86042 3.99078 4.03032 4.13556 4.27800 4.30029 4.35627 4.37811 4.49230 4.58837 4.60498 4.87578 4.89788 4.90678 4.94612 5.03892 5.04792 5.09163 5.15931 5.23048 5.23609 5.37911 5.40969 5.46585 5.47911 5.60565 5.84185 6.01121 6.28095 6.41941 6.96823 7.09676 7.50878 7.94395 8.72688 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.009346 B = 0.005949 C = 0.004015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2995.355693 B = 4705.454085 C = 6972.529020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C -0.115 4.115 4 C 0.116 3.884 5 N -0.429 5.429 6 C -0.346 4.346 7 H 0.091 0.909 8 C 0.015 3.985 9 N -0.889 5.889 10 Si 0.972 3.028 11 H -0.268 1.268 12 H -0.284 1.284 13 H -0.264 1.264 14 C 0.503 3.497 15 O -0.622 6.622 16 C -0.138 4.138 17 C -0.024 4.024 18 C -0.167 4.167 19 C 0.119 3.881 20 F -0.136 7.136 21 C -0.172 4.172 22 C 0.194 3.806 23 N -0.660 5.660 24 C 0.506 3.494 25 C -0.162 4.162 26 O -0.569 6.569 27 H 0.066 0.934 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.048 0.952 34 H 0.032 0.968 35 H 0.091 0.909 36 H 0.273 0.727 37 H 0.136 0.864 38 H 0.165 0.835 39 H 0.146 0.854 40 H 0.420 0.580 41 H 0.120 0.880 42 H 0.105 0.895 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.770 3.927 -0.990 9.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.155 4.155 3 C -0.153 4.153 4 C -0.007 4.007 5 N -0.145 5.145 6 C -0.474 4.474 7 H 0.108 0.892 8 C -0.189 4.189 9 N -0.526 5.526 10 Si 0.796 3.204 11 H -0.193 1.193 12 H -0.210 1.210 13 H -0.189 1.189 14 C 0.292 3.708 15 O -0.510 6.510 16 C -0.144 4.144 17 C -0.044 4.044 18 C -0.186 4.186 19 C 0.099 3.901 20 F -0.115 7.115 21 C -0.194 4.194 22 C 0.097 3.903 23 N -0.304 5.304 24 C 0.298 3.702 25 C -0.220 4.220 26 O -0.448 6.448 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.050 0.950 35 H 0.109 0.891 36 H 0.083 0.917 37 H 0.154 0.846 38 H 0.182 0.818 39 H 0.163 0.837 40 H 0.257 0.743 41 H 0.138 0.862 42 H 0.124 0.876 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -8.395 4.124 -1.777 9.520 hybrid contribution 0.449 -0.162 1.019 1.125 sum -7.946 3.962 -0.758 8.912 Atomic orbital electron populations 1.21707 0.94044 1.02246 1.01964 1.21405 0.97154 0.95306 1.01603 1.21789 0.94866 0.97844 1.00847 1.21434 0.93477 0.84044 1.01762 1.43585 1.53985 1.12064 1.04843 1.19514 1.37134 0.98433 0.92322 0.89167 1.26071 0.93498 0.96148 1.03222 1.69958 1.31268 1.16060 1.35296 0.85301 0.78723 0.78499 0.77894 1.19262 1.20969 1.18855 1.18425 0.81264 0.87100 0.83967 1.90634 1.57828 1.70496 1.32038 1.19866 0.96370 0.93076 1.05091 1.20966 0.94416 0.95753 0.93218 1.21175 1.01810 0.91579 1.04053 1.17562 0.94181 0.78270 1.00042 1.91478 1.91746 1.33707 1.94562 1.20842 0.98133 0.95265 1.05121 1.17336 0.86862 0.91248 0.94834 1.43519 1.19190 1.34747 1.32926 1.21999 0.90193 0.80346 0.77664 1.21971 0.89989 1.05727 1.04358 1.90695 1.62877 1.32774 1.58452 0.91496 0.92566 0.92495 0.92542 0.92331 0.92395 0.93315 0.94988 0.89115 0.91721 0.84629 0.81790 0.83683 0.74299 0.86199 0.87596 0.87536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 9.91 71.98 0.71 -2.51 16 2 C -0.12 -3.41 5.93 30.59 0.18 -3.23 16 3 C -0.11 -4.12 5.50 30.59 0.17 -3.95 16 4 C 0.12 5.18 4.91 86.38 0.42 5.60 16 5 N -0.43 -20.03 2.51 -639.40 -1.61 -21.64 16 6 C -0.35 -16.08 7.51 84.09 0.63 -15.44 16 7 H 0.09 4.11 7.19 -2.91 -0.02 4.09 16 8 C 0.01 0.67 5.04 84.94 0.43 1.10 16 9 N -0.89 -44.00 11.35 21.67 0.25 -43.75 16 10 Si 0.97 36.93 29.58 68.60 2.03 38.96 16 11 H -0.27 -9.94 7.11 99.48 0.71 -9.23 16 12 H -0.28 -10.82 7.11 99.48 0.71 -10.11 16 13 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 14 C 0.50 23.44 6.14 86.63 0.53 23.97 16 15 O -0.62 -31.66 16.61 -4.16 -0.07 -31.73 16 16 C -0.14 -5.76 4.71 -19.99 -0.09 -5.86 16 17 C -0.02 -0.93 8.39 22.52 0.19 -0.74 16 18 C -0.17 -5.44 10.00 22.29 0.22 -5.21 16 19 C 0.12 4.02 7.30 22.44 0.16 4.18 16 20 F -0.14 -4.33 17.26 44.97 0.78 -3.56 16 21 C -0.17 -6.16 8.62 22.40 0.19 -5.97 16 22 C 0.19 7.35 6.30 38.60 0.24 7.59 16 23 N -0.66 -21.59 4.94 -302.94 -1.50 -23.09 16 24 C 0.51 15.07 7.69 87.66 0.67 15.74 16 25 C -0.16 -2.82 10.32 71.24 0.74 -2.09 16 26 O -0.57 -21.08 14.71 -3.04 -0.04 -21.12 16 27 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 28 H 0.06 1.22 8.14 -2.39 -0.02 1.21 16 29 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.06 1.72 8.14 -2.39 -0.02 1.71 16 32 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 33 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.03 1.53 7.51 -2.39 -0.02 1.52 16 35 H 0.09 4.35 5.57 -2.39 -0.01 4.33 16 36 H 0.27 12.86 8.31 -92.71 -0.77 12.09 16 37 H 0.14 5.44 7.80 -2.91 -0.02 5.42 16 38 H 0.16 4.29 8.06 -2.91 -0.02 4.26 16 39 H 0.15 5.13 6.36 -2.91 -0.02 5.12 16 40 H 0.42 12.82 8.12 -92.71 -0.75 12.06 16 41 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.11 1.66 8.12 -2.38 -0.02 1.64 16 43 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -62.29 366.86 5.53 -56.76 By element: Atomic # 1 Polarization: 35.68 SS G_CDS: 0.29 Total: 35.97 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: 5.41 Total: 13.19 kcal Atomic # 7 Polarization: -85.62 SS G_CDS: -2.86 Total: -88.48 kcal Atomic # 8 Polarization: -52.74 SS G_CDS: -0.11 Total: -52.85 kcal Atomic # 9 Polarization: -4.33 SS G_CDS: 0.78 Total: -3.56 kcal Atomic # 14 Polarization: 36.93 SS G_CDS: 2.03 Total: 38.96 kcal Total: -62.29 5.53 -56.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186419895.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.791 kcal (2) G-P(sol) polarization free energy of solvation -62.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds