Wall clock time and date at job start Tue Mar 31 2020 14:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47329 * 2 1 4 4 C 1.52993 * 109.47329 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47011 * 179.97438 * 4 3 2 6 6 C 1.46504 * 120.00060 * 269.99664 * 5 4 3 7 7 C 1.50700 * 109.47288 * 270.00142 * 6 5 4 8 8 H 1.07996 * 119.99882 * 0.02562 * 7 6 5 9 9 C 1.37873 * 119.99971 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99895 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00077 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.47066 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.47126 * 120.00191 * 11 9 7 14 14 H 1.48503 * 109.47520 * 240.00332 * 11 9 7 15 15 C 1.34780 * 120.00234 * 90.00190 * 5 4 3 16 16 O 1.21592 * 119.99385 * 359.97438 * 15 5 4 17 17 N 1.34770 * 120.00009 * 180.27250 * 15 5 4 18 18 C 1.40201 * 119.99924 * 174.05884 * 17 15 5 19 19 C 1.38632 * 120.09540 * 335.20920 * 18 17 15 20 20 C 1.38265 * 120.00875 * 180.02562 * 19 18 17 21 21 C 1.38286 * 120.20382 * 0.02562 * 20 19 18 22 22 C 1.38209 * 120.19875 * 359.97438 * 21 20 19 23 23 C 1.38769 * 119.98600 * 359.68054 * 22 21 20 24 24 S 1.76203 * 120.10382 * 180.29638 * 23 22 21 25 25 C 1.81404 * 103.00000 * 0.31835 * 24 23 22 26 26 H 1.08999 * 109.47381 * 300.00265 * 1 2 3 27 27 H 1.09005 * 109.47451 * 60.00127 * 1 2 3 28 28 H 1.09001 * 109.47397 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47381 * 239.99735 * 2 1 3 30 30 H 1.09000 * 109.47011 * 119.99721 * 2 1 3 31 31 H 1.08999 * 109.47106 * 59.99567 * 3 2 1 32 32 H 1.09005 * 109.46750 * 300.00302 * 3 2 1 33 33 H 1.08999 * 109.47381 * 59.99735 * 4 3 2 34 34 H 1.09000 * 109.47011 * 299.99721 * 4 3 2 35 35 H 1.09006 * 109.46768 * 30.00373 * 6 5 4 36 36 H 1.09003 * 109.47045 * 150.00100 * 6 5 4 37 37 H 0.97004 * 119.99851 * 180.02562 * 10 9 7 38 38 H 0.96994 * 120.00299 * 354.06506 * 17 15 5 39 39 H 1.08006 * 119.99613 * 359.97438 * 19 18 17 40 40 H 1.08004 * 119.89311 * 179.97438 * 20 19 18 41 41 H 1.08008 * 119.89878 * 179.97438 * 21 20 19 42 42 H 1.07998 * 120.00748 * 179.97438 * 22 21 20 43 43 H 1.09005 * 109.46475 * 59.99880 * 25 24 23 44 44 H 1.08999 * 109.47119 * 179.97438 * 25 24 23 45 45 H 1.08999 * 109.46809 * 300.00119 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 7 4.0582 2.8237 0.0000 6 6 4.3030 3.5136 -1.2690 7 6 5.7265 3.2765 -1.7033 8 1 6.3830 2.6721 -1.0951 9 6 6.1903 3.8304 -2.8776 10 7 5.3905 4.5661 -3.6185 11 14 7.9549 3.5372 -3.4155 12 1 8.6422 2.6826 -2.4142 13 1 7.9635 2.8569 -4.7355 14 1 8.6619 4.8386 -3.5248 15 6 4.2824 3.4598 1.1669 16 8 4.0789 2.8873 2.2202 17 7 4.7264 4.7323 1.1663 18 6 4.8409 5.4354 2.3739 19 6 4.0624 5.0768 3.4635 20 6 4.1764 5.7718 4.6534 21 6 5.0653 6.8256 4.7612 22 6 5.8456 7.1902 3.6802 23 6 5.7429 6.4938 2.4844 24 16 6.7417 6.9511 1.1067 25 6 7.7122 8.3421 1.7501 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6766 1.9563 -0.8900 33 1 3.9337 0.9285 -0.8891 34 1 3.9329 0.9289 0.8909 35 1 3.6225 3.1290 -2.0288 36 1 4.1359 4.5829 -1.1394 37 1 5.7168 4.9555 -4.4449 38 1 4.9666 5.1618 0.3305 39 1 3.3662 4.2551 3.3827 40 1 3.5687 5.4911 5.5010 41 1 5.1501 7.3653 5.6929 42 1 6.5385 8.0140 3.7677 43 1 8.3027 8.0090 2.6037 44 1 8.3778 8.7122 0.9704 45 1 7.0393 9.1405 2.0632 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186729526.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:55 Heat of formation + Delta-G solvation = -11.987552 kcal Electronic energy + Delta-G solvation = -25273.595022 eV Core-core repulsion = 21803.026391 eV Total energy + Delta-G solvation = -3470.568631 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.20667 -38.38810 -35.92515 -34.49993 -33.95852 -32.50015 -31.06402 -29.66522 -28.73700 -28.43394 -26.88309 -23.69360 -23.11647 -22.76335 -21.82460 -20.79892 -19.17884 -18.03016 -17.03963 -16.74628 -16.44370 -15.32886 -15.19173 -14.93028 -14.76328 -14.59448 -14.16368 -13.85624 -13.81178 -13.61489 -13.44294 -13.19130 -12.74545 -12.52038 -12.39875 -12.32620 -12.20100 -11.86880 -11.55298 -11.18150 -11.14112 -11.00472 -10.89161 -10.82753 -10.71010 -10.26432 -10.14522 -10.08703 -9.90939 -9.73311 -9.48503 -9.25598 -8.58765 -8.04326 -7.67824 -6.97201 -6.19874 -4.28077 1.44143 1.62257 1.70638 2.61476 3.22294 3.28512 3.31026 3.37552 3.66498 4.14666 4.31450 4.59396 5.00610 5.07570 5.09343 5.13557 5.20560 5.21252 5.24021 5.36459 5.44356 5.61244 5.65659 5.73176 5.79468 5.96133 5.98806 6.02944 6.04215 6.13016 6.24687 6.36946 6.42291 6.48144 6.56335 6.66197 6.72615 6.75565 6.89209 7.08420 7.32552 7.37246 7.74377 7.75404 8.00904 8.51318 8.81897 9.18924 9.41477 10.86407 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.007970 B = 0.005761 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3512.190666 B = 4859.360939 C = 7951.104652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C -0.134 4.134 4 C 0.137 3.863 5 N -0.606 5.606 6 C 0.237 3.763 7 C -0.540 4.540 8 H 0.062 0.938 9 C 0.068 3.932 10 N -0.889 5.889 11 Si 0.895 3.105 12 H -0.272 1.272 13 H -0.283 1.283 14 H -0.281 1.281 15 C 0.709 3.291 16 O -0.602 6.602 17 N -0.675 5.675 18 C 0.208 3.792 19 C -0.122 4.122 20 C -0.104 4.104 21 C -0.138 4.138 22 C -0.113 4.113 23 C -0.131 4.131 24 S -0.098 6.098 25 C -0.148 4.148 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.042 0.958 36 H 0.029 0.971 37 H 0.265 0.735 38 H 0.421 0.579 39 H 0.153 0.847 40 H 0.122 0.878 41 H 0.119 0.881 42 H 0.122 0.878 43 H 0.081 0.919 44 H 0.105 0.895 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.706 3.384 10.499 11.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.173 4.173 4 C 0.013 3.987 5 N -0.339 5.339 6 C 0.117 3.883 7 C -0.579 4.579 8 H 0.081 0.919 9 C -0.135 4.135 10 N -0.527 5.527 11 Si 0.723 3.277 12 H -0.196 1.196 13 H -0.209 1.209 14 H -0.207 1.207 15 C 0.411 3.589 16 O -0.483 6.483 17 N -0.323 5.323 18 C 0.104 3.896 19 C -0.144 4.144 20 C -0.125 4.125 21 C -0.159 4.159 22 C -0.138 4.138 23 C -0.246 4.246 24 S 0.144 5.856 25 C -0.317 4.317 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.060 0.940 36 H 0.047 0.953 37 H 0.075 0.925 38 H 0.262 0.738 39 H 0.170 0.830 40 H 0.140 0.860 41 H 0.137 0.863 42 H 0.139 0.861 43 H 0.100 0.900 44 H 0.124 0.876 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.737 2.608 9.737 10.445 hybrid contribution 1.154 0.768 0.290 1.416 sum -1.583 3.376 10.027 10.698 Atomic orbital electron populations 1.21752 0.96205 1.01049 1.01705 1.21433 0.95526 0.96972 1.01906 1.21991 0.96553 0.96484 1.02234 1.21212 0.92656 0.82169 1.02619 1.47449 1.66265 1.14205 1.05963 1.19395 0.97193 0.92130 0.79620 1.21533 0.96528 1.32844 1.06993 0.91932 1.24917 0.97930 0.94587 0.96070 1.69931 1.35638 1.32941 1.14196 0.86473 0.84505 0.78243 0.78526 1.19601 1.20889 1.20703 1.15782 0.78049 0.80510 0.84554 1.90767 1.60491 1.66673 1.30361 1.43027 1.67531 1.13021 1.08703 1.17173 0.93839 0.91429 0.87138 1.21468 0.99872 1.01216 0.91878 1.21040 0.98664 0.95450 0.97364 1.20873 0.98193 0.98708 0.98084 1.20837 1.00973 0.99970 0.91999 1.21474 1.02022 1.02553 0.98591 1.86129 1.45106 1.39001 1.15409 1.23664 1.02690 0.99696 1.05607 0.92962 0.92832 0.93139 0.91958 0.92087 0.92029 0.91880 0.90349 0.90928 0.94044 0.95292 0.92527 0.73780 0.82959 0.85981 0.86296 0.86060 0.90021 0.87594 0.90045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.91 37.15 0.37 -1.33 16 2 C -0.12 -1.55 5.93 -26.73 -0.16 -1.71 16 3 C -0.13 -2.12 5.54 -26.73 -0.15 -2.26 16 4 C 0.14 2.53 5.41 -4.05 -0.02 2.51 16 5 N -0.61 -12.95 2.46 -180.80 -0.44 -13.40 16 6 C 0.24 5.61 4.88 -5.19 -0.03 5.59 16 7 C -0.54 -14.05 9.39 -34.44 -0.32 -14.37 16 8 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 9 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 10 N -0.89 -24.24 13.29 55.43 0.74 -23.50 16 11 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 12 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 13 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 14 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 15 C 0.71 15.48 8.08 -86.92 -0.70 14.78 16 16 O -0.60 -13.61 13.10 5.28 0.07 -13.54 16 17 N -0.68 -14.01 5.00 -14.06 -0.07 -14.08 16 18 C 0.21 3.91 6.44 -83.41 -0.54 3.37 16 19 C -0.12 -2.13 8.72 -39.43 -0.34 -2.47 16 20 C -0.10 -1.47 10.04 -39.55 -0.40 -1.87 16 21 C -0.14 -1.78 10.04 -39.57 -0.40 -2.17 16 22 C -0.11 -1.57 9.36 -39.40 -0.37 -1.94 16 23 C -0.13 -2.19 6.12 -38.91 -0.24 -2.43 16 24 S -0.10 -1.61 21.28 -107.50 -2.29 -3.90 16 25 C -0.15 -1.63 9.15 101.05 0.92 -0.70 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.08 1.43 8.07 -51.93 -0.42 1.01 16 34 H 0.07 1.35 7.42 -51.93 -0.39 0.97 16 35 H 0.04 1.02 8.07 -51.93 -0.42 0.60 16 36 H 0.03 0.72 6.45 -51.93 -0.33 0.38 16 37 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 38 H 0.42 9.09 5.47 -40.82 -0.22 8.87 16 39 H 0.15 2.86 5.79 -52.48 -0.30 2.56 16 40 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 41 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 42 H 0.12 1.36 5.88 -52.49 -0.31 1.05 16 43 H 0.08 0.81 7.76 -51.92 -0.40 0.40 16 44 H 0.11 1.03 8.14 -51.92 -0.42 0.61 16 45 H 0.08 0.78 7.73 -51.92 -0.40 0.38 16 LS Contribution 380.46 15.07 5.73 5.73 Total: -1.00 -28.95 380.46 -10.72 -39.68 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -6.97 Total: 10.61 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -2.47 Total: -3.31 kcal Atomic # 7 Polarization: -51.20 SS G_CDS: 0.22 Total: -50.98 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: 0.07 Total: -13.54 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.29 Total: -3.90 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -28.95 -10.72 -39.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186729526.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.688 kcal (2) G-P(sol) polarization free energy of solvation -28.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds