Wall clock time and date at job start Tue Mar 31 2020 14:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47329 * 2 1 4 4 C 1.52993 * 109.47329 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47011 * 179.97438 * 4 3 2 6 6 C 1.46504 * 120.00060 * 269.99664 * 5 4 3 7 7 C 1.50700 * 109.47288 * 270.00142 * 6 5 4 8 8 H 1.07996 * 119.99882 * 0.02562 * 7 6 5 9 9 C 1.37873 * 119.99971 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99895 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00077 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.47066 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.47126 * 120.00191 * 11 9 7 14 14 H 1.48503 * 109.47520 * 240.00332 * 11 9 7 15 15 C 1.34780 * 120.00234 * 90.00190 * 5 4 3 16 16 O 1.21592 * 119.99385 * 359.97438 * 15 5 4 17 17 N 1.34770 * 120.00009 * 180.27250 * 15 5 4 18 18 C 1.40201 * 119.99924 * 174.05884 * 17 15 5 19 19 C 1.38632 * 120.09540 * 335.20920 * 18 17 15 20 20 C 1.38265 * 120.00875 * 180.02562 * 19 18 17 21 21 C 1.38286 * 120.20382 * 0.02562 * 20 19 18 22 22 C 1.38209 * 120.19875 * 359.97438 * 21 20 19 23 23 C 1.38769 * 119.98600 * 359.68054 * 22 21 20 24 24 S 1.76203 * 120.10382 * 180.29638 * 23 22 21 25 25 C 1.81404 * 103.00000 * 0.31835 * 24 23 22 26 26 H 1.08999 * 109.47381 * 300.00265 * 1 2 3 27 27 H 1.09005 * 109.47451 * 60.00127 * 1 2 3 28 28 H 1.09001 * 109.47397 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47381 * 239.99735 * 2 1 3 30 30 H 1.09000 * 109.47011 * 119.99721 * 2 1 3 31 31 H 1.08999 * 109.47106 * 59.99567 * 3 2 1 32 32 H 1.09005 * 109.46750 * 300.00302 * 3 2 1 33 33 H 1.08999 * 109.47381 * 59.99735 * 4 3 2 34 34 H 1.09000 * 109.47011 * 299.99721 * 4 3 2 35 35 H 1.09006 * 109.46768 * 30.00373 * 6 5 4 36 36 H 1.09003 * 109.47045 * 150.00100 * 6 5 4 37 37 H 0.97004 * 119.99851 * 180.02562 * 10 9 7 38 38 H 0.96994 * 120.00299 * 354.06506 * 17 15 5 39 39 H 1.08006 * 119.99613 * 359.97438 * 19 18 17 40 40 H 1.08004 * 119.89311 * 179.97438 * 20 19 18 41 41 H 1.08008 * 119.89878 * 179.97438 * 21 20 19 42 42 H 1.07998 * 120.00748 * 179.97438 * 22 21 20 43 43 H 1.09005 * 109.46475 * 59.99880 * 25 24 23 44 44 H 1.08999 * 109.47119 * 179.97438 * 25 24 23 45 45 H 1.08999 * 109.46809 * 300.00119 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 7 4.0582 2.8237 0.0000 6 6 4.3030 3.5136 -1.2690 7 6 5.7265 3.2765 -1.7033 8 1 6.3830 2.6721 -1.0951 9 6 6.1903 3.8304 -2.8776 10 7 5.3905 4.5661 -3.6185 11 14 7.9549 3.5372 -3.4155 12 1 8.6422 2.6826 -2.4142 13 1 7.9635 2.8569 -4.7355 14 1 8.6619 4.8386 -3.5248 15 6 4.2824 3.4598 1.1669 16 8 4.0789 2.8873 2.2202 17 7 4.7264 4.7323 1.1663 18 6 4.8409 5.4354 2.3739 19 6 4.0624 5.0768 3.4635 20 6 4.1764 5.7718 4.6534 21 6 5.0653 6.8256 4.7612 22 6 5.8456 7.1902 3.6802 23 6 5.7429 6.4938 2.4844 24 16 6.7417 6.9511 1.1067 25 6 7.7122 8.3421 1.7501 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6766 1.9563 -0.8900 33 1 3.9337 0.9285 -0.8891 34 1 3.9329 0.9289 0.8909 35 1 3.6225 3.1290 -2.0288 36 1 4.1359 4.5829 -1.1394 37 1 5.7168 4.9555 -4.4449 38 1 4.9666 5.1618 0.3305 39 1 3.3662 4.2551 3.3827 40 1 3.5687 5.4911 5.5010 41 1 5.1501 7.3653 5.6929 42 1 6.5385 8.0140 3.7677 43 1 8.3027 8.0090 2.6037 44 1 8.3778 8.7122 0.9704 45 1 7.0393 9.1405 2.0632 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186729526.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:55 Heat of formation + Delta-G solvation = -25.663740 kcal Electronic energy + Delta-G solvation = -25274.188066 eV Core-core repulsion = 21803.026391 eV Total energy + Delta-G solvation = -3471.161675 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.75836 -39.72865 -37.41141 -36.11801 -35.35461 -34.39016 -32.21676 -30.95638 -29.97662 -29.65852 -28.59195 -25.06890 -24.99941 -23.97571 -23.08761 -22.01093 -20.75495 -19.47936 -18.73025 -18.39741 -18.00597 -16.69356 -16.61290 -16.46915 -16.31120 -16.08011 -15.47169 -15.03785 -15.01814 -14.75216 -14.65203 -14.51881 -14.34928 -13.87711 -13.82810 -13.52292 -13.45284 -13.34413 -12.93732 -12.88561 -12.66605 -12.39950 -12.32054 -12.24793 -12.04192 -11.86871 -11.68243 -11.52494 -11.42310 -11.06329 -10.96942 -10.65648 -10.59748 -9.61273 -9.17026 -8.28636 -8.21451 -6.38932 0.24294 0.40898 0.56779 1.37193 1.40227 1.50777 1.54161 1.76528 2.09697 2.38199 2.84834 2.96923 3.06671 3.88902 3.98906 4.03281 4.15749 4.24354 4.28453 4.29055 4.35456 4.42803 4.48263 4.54903 4.65936 4.74677 4.79542 4.81989 4.87227 4.93854 4.96285 5.09257 5.09615 5.17755 5.27032 5.30880 5.36846 5.46439 5.56037 5.58631 5.62187 5.75750 5.98589 6.06692 6.07703 6.62764 6.90382 7.32781 7.51892 8.81862 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.007970 B = 0.005761 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3512.190666 B = 4859.360939 C = 7951.104652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C -0.122 4.122 4 C 0.134 3.866 5 N -0.611 5.611 6 C 0.255 3.745 7 C -0.547 4.547 8 H 0.047 0.953 9 C 0.029 3.971 10 N -0.914 5.914 11 Si 0.953 3.047 12 H -0.275 1.275 13 H -0.274 1.274 14 H -0.276 1.276 15 C 0.702 3.298 16 O -0.615 6.615 17 N -0.679 5.679 18 C 0.165 3.835 19 C -0.141 4.141 20 C -0.101 4.101 21 C -0.121 4.121 22 C -0.110 4.110 23 C -0.132 4.132 24 S -0.181 6.181 25 C -0.126 4.126 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.048 0.952 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.030 0.970 36 H 0.015 0.985 37 H 0.269 0.731 38 H 0.414 0.586 39 H 0.130 0.870 40 H 0.152 0.848 41 H 0.164 0.836 42 H 0.155 0.845 43 H 0.098 0.902 44 H 0.119 0.881 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.878 4.520 12.300 13.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C -0.161 4.161 4 C 0.011 3.989 5 N -0.344 5.344 6 C 0.134 3.866 7 C -0.586 4.586 8 H 0.066 0.934 9 C -0.172 4.172 10 N -0.553 5.553 11 Si 0.778 3.222 12 H -0.200 1.200 13 H -0.199 1.199 14 H -0.201 1.201 15 C 0.405 3.595 16 O -0.498 6.498 17 N -0.325 5.325 18 C 0.064 3.936 19 C -0.163 4.163 20 C -0.122 4.122 21 C -0.142 4.142 22 C -0.134 4.134 23 C -0.248 4.248 24 S 0.060 5.940 25 C -0.294 4.294 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.048 0.952 36 H 0.033 0.967 37 H 0.078 0.922 38 H 0.253 0.747 39 H 0.148 0.852 40 H 0.170 0.830 41 H 0.181 0.819 42 H 0.172 0.828 43 H 0.117 0.883 44 H 0.138 0.862 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.919 3.749 11.568 12.311 hybrid contribution 0.922 0.515 -0.150 1.067 sum -0.997 4.264 11.418 12.229 Atomic orbital electron populations 1.21730 0.94702 1.02333 1.01665 1.21418 0.96792 0.94627 1.02536 1.21874 0.94480 0.98567 1.01151 1.21381 0.94421 0.80739 1.02335 1.47483 1.66666 1.15113 1.05130 1.19000 0.95909 0.91443 0.80231 1.21606 0.97252 1.32693 1.07039 0.93448 1.25570 1.01335 0.94269 0.96040 1.70006 1.37175 1.33525 1.14590 0.85579 0.80252 0.78179 0.78143 1.20002 1.19948 1.20116 1.15937 0.78193 0.81015 0.84393 1.90739 1.61315 1.67173 1.30555 1.43004 1.67510 1.12651 1.09361 1.17559 0.96102 0.93095 0.86876 1.21422 1.00050 1.01673 0.93182 1.21398 0.98962 0.95105 0.96705 1.21384 0.96032 0.97508 0.99264 1.21318 1.01170 1.00041 0.90859 1.21559 1.01544 1.02301 0.99354 1.86386 1.46900 1.42735 1.17982 1.23750 1.02174 0.97151 1.06358 0.93058 0.92872 0.91171 0.91201 0.91576 0.93301 0.92648 0.90354 0.91273 0.95237 0.96717 0.92183 0.74703 0.85242 0.83031 0.81864 0.82763 0.88318 0.86228 0.88021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.19 9.91 71.98 0.71 -2.48 16 2 C -0.12 -2.95 5.93 30.59 0.18 -2.76 16 3 C -0.12 -3.99 5.54 30.59 0.17 -3.82 16 4 C 0.13 5.17 5.41 86.38 0.47 5.64 16 5 N -0.61 -27.61 2.46 -844.19 -2.07 -29.69 16 6 C 0.26 12.77 4.88 85.63 0.42 13.19 16 7 C -0.55 -29.51 9.39 25.60 0.24 -29.27 16 8 H 0.05 2.66 7.81 -2.91 -0.02 2.64 16 9 C 0.03 1.56 5.46 84.65 0.46 2.02 16 10 N -0.91 -50.80 13.29 21.45 0.28 -50.51 16 11 Si 0.95 43.00 29.54 68.60 2.03 45.03 16 12 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 13 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 14 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 15 C 0.70 32.51 8.08 179.06 1.45 33.96 16 16 O -0.62 -29.28 13.10 -4.01 -0.05 -29.33 16 17 N -0.68 -29.90 5.00 -316.67 -1.58 -31.49 16 18 C 0.17 6.43 6.44 38.20 0.25 6.67 16 19 C -0.14 -5.01 8.72 22.37 0.19 -4.81 16 20 C -0.10 -2.63 10.04 22.29 0.22 -2.41 16 21 C -0.12 -2.65 10.04 22.27 0.22 -2.43 16 22 C -0.11 -2.72 9.36 22.39 0.21 -2.51 16 23 C -0.13 -4.39 6.12 22.70 0.14 -4.26 16 24 S -0.18 -5.99 21.28 -56.49 -1.20 -7.19 16 25 C -0.13 -2.44 9.15 113.37 1.04 -1.40 16 26 H 0.05 1.11 8.14 -2.39 -0.02 1.10 16 27 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 28 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 33 H 0.08 2.97 8.07 -2.39 -0.02 2.95 16 34 H 0.07 2.69 7.42 -2.39 -0.02 2.67 16 35 H 0.03 1.53 8.07 -2.38 -0.02 1.51 16 36 H 0.01 0.79 6.45 -2.39 -0.02 0.77 16 37 H 0.27 14.10 8.31 -92.71 -0.77 13.33 16 38 H 0.41 19.18 5.47 -92.71 -0.51 18.67 16 39 H 0.13 5.12 5.79 -2.91 -0.02 5.11 16 40 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 41 H 0.16 2.19 8.06 -2.91 -0.02 2.16 16 42 H 0.15 2.73 5.88 -2.91 -0.02 2.71 16 43 H 0.10 1.59 7.76 -2.39 -0.02 1.57 16 44 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.10 1.57 7.73 -2.39 -0.02 1.55 16 Total: -1.00 -65.66 380.46 4.25 -61.41 By element: Atomic # 1 Polarization: 35.96 SS G_CDS: 0.48 Total: 36.44 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: 6.37 Total: 5.33 kcal Atomic # 7 Polarization: -108.32 SS G_CDS: -3.37 Total: -111.69 kcal Atomic # 8 Polarization: -29.28 SS G_CDS: -0.05 Total: -29.33 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Atomic # 16 Polarization: -5.99 SS G_CDS: -1.20 Total: -7.19 kcal Total: -65.66 4.25 -61.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186729526.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.748 kcal (2) G-P(sol) polarization free energy of solvation -65.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds