Wall clock time and date at job start Tue Mar 31 2020 14:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.46825 * 2 1 4 4 C 1.53003 * 109.46513 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.46694 * 180.02562 * 4 3 2 6 6 C 1.46507 * 119.99604 * 269.99730 * 5 4 3 7 7 C 1.50698 * 109.46788 * 270.00112 * 6 5 4 8 8 H 1.07996 * 120.00252 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99504 * 179.97438 * 7 6 5 10 10 N 1.31513 * 120.00482 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99769 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47214 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.47165 * 120.00233 * 11 9 7 14 14 H 1.48501 * 109.47342 * 240.00173 * 11 9 7 15 15 C 1.34774 * 120.00286 * 89.99572 * 5 4 3 16 16 O 1.21585 * 119.99795 * 179.97438 * 15 5 4 17 17 N 1.34767 * 120.00268 * 0.02562 * 15 5 4 18 18 C 1.39945 * 120.00452 * 184.58798 * 17 15 5 19 19 C 1.38953 * 120.03459 * 144.87421 * 18 17 15 20 20 C 1.38161 * 120.09381 * 180.02562 * 19 18 17 21 21 C 1.38153 * 120.14780 * 359.68111 * 20 19 18 22 22 C 1.39008 * 120.05257 * 0.59445 * 21 20 19 23 23 S 1.76198 * 120.04217 * 179.69488 * 22 21 20 24 24 C 1.81401 * 103.00124 * 359.73180 * 23 22 21 25 25 C 1.38692 * 120.02275 * 324.89873 * 18 17 15 26 26 H 1.08999 * 109.46810 * 299.99651 * 1 2 3 27 27 H 1.08994 * 109.47317 * 60.00107 * 1 2 3 28 28 H 1.08995 * 109.47176 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.46786 * 239.99897 * 2 1 3 30 30 H 1.09002 * 109.47029 * 119.99859 * 2 1 3 31 31 H 1.08999 * 109.47142 * 60.00552 * 3 2 1 32 32 H 1.08994 * 109.47086 * 300.00034 * 3 2 1 33 33 H 1.08994 * 109.47100 * 59.99896 * 4 3 2 34 34 H 1.09002 * 109.47027 * 299.99667 * 4 3 2 35 35 H 1.09003 * 109.46827 * 30.00236 * 6 5 4 36 36 H 1.08997 * 109.47197 * 149.99842 * 6 5 4 37 37 H 0.96993 * 120.00671 * 179.97438 * 10 9 7 38 38 H 0.97004 * 120.00008 * 4.58662 * 17 15 5 39 39 H 1.08006 * 119.95373 * 0.02737 * 19 18 17 40 40 H 1.07999 * 119.92925 * 180.02562 * 20 19 18 41 41 H 1.07993 * 119.97503 * 180.29952 * 21 20 19 42 42 H 1.09000 * 109.47325 * 179.97438 * 24 23 22 43 43 H 1.09002 * 109.47061 * 299.99944 * 24 23 22 44 44 H 1.08999 * 109.47231 * 59.99665 * 24 23 22 45 45 H 1.08001 * 120.08067 * 359.97438 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8238 0.0000 6 6 4.3020 3.5151 -1.2686 7 6 5.7251 3.2784 -1.7042 8 1 6.3822 2.6733 -1.0972 9 6 6.1879 3.8337 -2.8784 10 7 5.3877 4.5701 -3.6178 11 14 7.9521 3.5410 -3.4181 12 1 8.6402 2.6853 -2.4183 13 1 7.9596 2.8621 -4.7388 14 1 8.6590 4.8425 -3.5266 15 6 4.2834 3.4585 1.1674 16 8 4.6891 4.6046 1.1678 17 7 4.0597 2.8224 2.3343 18 6 4.2009 3.5106 3.5447 19 6 3.3586 3.2215 4.6114 20 6 3.4965 3.9005 5.8067 21 6 4.4761 4.8644 5.9481 22 6 5.3183 5.1625 4.8832 23 16 6.5623 6.3975 5.0613 24 6 6.3298 6.9679 6.7676 25 6 5.1813 4.4821 3.6803 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.6767 1.9564 -0.8899 33 1 3.9329 0.9288 -0.8908 34 1 3.9337 0.9285 0.8892 35 1 3.6208 3.1313 -2.0281 36 1 4.1351 4.5842 -1.1376 37 1 5.7133 4.9610 -4.4436 38 1 3.8009 1.8876 2.3353 39 1 2.5951 2.4649 4.5059 40 1 2.8407 3.6734 6.6342 41 1 4.5845 5.3900 6.8853 42 1 7.0585 7.7465 6.9930 43 1 5.3225 7.3682 6.8827 44 1 6.4687 6.1314 7.4524 45 1 5.8372 4.7086 2.8527 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188035704.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:59 Heat of formation + Delta-G solvation = -8.372888 kcal Electronic energy + Delta-G solvation = -24843.632655 eV Core-core repulsion = 21373.220768 eV Total energy + Delta-G solvation = -3470.411887 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.28185 -38.46527 -36.12681 -34.54535 -33.89262 -32.49026 -30.90693 -30.05632 -28.94884 -28.61251 -26.73658 -23.57685 -23.38740 -22.89807 -21.78932 -21.05430 -19.33619 -18.34234 -17.13941 -16.46724 -16.26059 -15.96241 -15.32702 -15.16764 -14.73526 -14.47686 -14.23107 -13.98271 -13.87985 -13.67477 -13.59370 -13.25950 -12.88411 -12.72009 -12.61614 -12.30749 -12.26043 -11.70596 -11.51133 -11.42716 -11.26956 -11.11238 -11.00788 -10.83177 -10.55964 -10.45929 -10.36005 -10.15060 -10.07828 -9.62899 -9.48528 -9.20567 -8.42328 -8.06771 -7.61651 -7.33844 -6.02975 -4.07505 1.26937 1.49737 1.53660 2.44548 3.16850 3.31303 3.39383 3.43768 3.62351 4.01368 4.32639 4.49488 4.89965 4.90913 4.92083 4.98703 5.06342 5.10273 5.17238 5.23246 5.31382 5.33907 5.47974 5.60576 5.62105 5.69458 5.76350 5.83201 5.84792 5.93441 6.03778 6.18140 6.31361 6.34689 6.41075 6.48364 6.48922 6.61973 6.83293 7.21641 7.35579 7.50659 7.66522 7.94873 8.24109 8.56499 8.93400 9.22768 9.57989 11.04941 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.008602 B = 0.004247 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3254.212875 B = 6591.254259 C = 9453.890334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.140 4.140 4 C 0.112 3.888 5 N -0.605 5.605 6 C 0.261 3.739 7 C -0.526 4.526 8 H 0.057 0.943 9 C 0.062 3.938 10 N -0.894 5.894 11 Si 0.897 3.103 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.282 1.282 15 C 0.697 3.303 16 O -0.565 6.565 17 N -0.696 5.696 18 C 0.198 3.802 19 C -0.160 4.160 20 C -0.084 4.084 21 C -0.162 4.162 22 C -0.067 4.067 23 S -0.109 6.109 24 C -0.148 4.148 25 C -0.101 4.101 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.056 0.944 35 H 0.034 0.966 36 H 0.045 0.955 37 H 0.263 0.737 38 H 0.402 0.598 39 H 0.124 0.876 40 H 0.125 0.875 41 H 0.120 0.880 42 H 0.105 0.895 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.489 -5.788 18.585 20.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.179 4.179 4 C -0.012 4.012 5 N -0.339 5.339 6 C 0.142 3.858 7 C -0.565 4.565 8 H 0.076 0.924 9 C -0.140 4.140 10 N -0.533 5.533 11 Si 0.725 3.275 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.208 1.208 15 C 0.399 3.601 16 O -0.441 6.441 17 N -0.346 5.346 18 C 0.099 3.901 19 C -0.184 4.184 20 C -0.104 4.104 21 C -0.187 4.187 22 C -0.180 4.180 23 S 0.133 5.867 24 C -0.316 4.316 25 C -0.127 4.127 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.105 0.895 34 H 0.075 0.925 35 H 0.052 0.948 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.239 0.761 39 H 0.142 0.858 40 H 0.143 0.857 41 H 0.137 0.863 42 H 0.124 0.876 43 H 0.101 0.899 44 H 0.100 0.900 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -5.306 -4.348 17.522 18.817 hybrid contribution -0.201 -1.102 0.465 1.213 sum -5.507 -5.450 17.987 19.585 Atomic orbital electron populations 1.21758 0.96027 1.01205 1.01856 1.21467 0.95755 0.96737 1.02010 1.22114 0.96280 0.96637 1.02877 1.21441 0.93062 0.84281 1.02451 1.47599 1.66853 1.13263 1.06206 1.19242 0.96253 0.93498 0.76841 1.21486 0.96976 1.31835 1.06206 0.92429 1.24914 0.97790 0.94908 0.96386 1.69934 1.35583 1.33447 1.14373 0.86460 0.84728 0.78085 0.78251 1.19831 1.21013 1.20846 1.15951 0.79221 0.84802 0.80094 1.90907 1.51027 1.16732 1.85397 1.43004 1.73718 1.14193 1.03644 1.17400 0.93404 0.94104 0.85153 1.20867 0.99969 1.03756 0.93791 1.20698 0.97427 0.95453 0.96826 1.21005 0.98349 1.01440 0.97882 1.21566 0.99599 1.00064 0.96753 1.85800 1.41742 1.43493 1.15695 1.23662 1.06200 1.04766 0.96998 1.21051 0.98330 0.96784 0.96503 0.92971 0.92653 0.93027 0.91667 0.92232 0.92267 0.91031 0.89470 0.92523 0.94790 0.93717 0.92775 0.76055 0.85793 0.85748 0.86250 0.87650 0.89893 0.89970 0.83103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.91 37.16 0.37 -1.06 16 2 C -0.12 -1.25 5.93 -26.73 -0.16 -1.41 16 3 C -0.14 -1.84 5.54 -26.73 -0.15 -1.99 16 4 C 0.11 1.74 5.21 -4.04 -0.02 1.72 16 5 N -0.61 -12.65 2.46 -180.80 -0.44 -13.09 16 6 C 0.26 6.75 5.16 -5.19 -0.03 6.73 16 7 C -0.53 -14.86 9.39 -34.44 -0.32 -15.18 16 8 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 9 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 10 N -0.89 -26.54 13.29 55.43 0.74 -25.81 16 11 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 12 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 15 C 0.70 14.87 8.12 -86.93 -0.71 14.16 16 16 O -0.56 -14.53 13.35 5.29 0.07 -14.45 16 17 N -0.70 -11.39 5.21 -14.25 -0.07 -11.46 16 18 C 0.20 3.17 6.30 -83.72 -0.53 2.64 16 19 C -0.16 -2.01 9.96 -39.34 -0.39 -2.40 16 20 C -0.08 -0.94 10.03 -39.64 -0.40 -1.34 16 21 C -0.16 -1.99 9.36 -39.33 -0.37 -2.36 16 22 C -0.07 -1.01 6.11 -39.06 -0.24 -1.25 16 23 S -0.11 -1.51 22.56 -107.50 -2.43 -3.94 16 24 C -0.15 -1.28 9.15 101.05 0.92 -0.36 16 25 C -0.10 -1.80 8.44 -39.18 -0.33 -2.13 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.09 1.42 8.07 -51.93 -0.42 1.00 16 34 H 0.06 0.73 6.30 -51.93 -0.33 0.40 16 35 H 0.03 0.88 8.07 -51.93 -0.42 0.47 16 36 H 0.04 1.32 7.42 -51.93 -0.39 0.93 16 37 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.40 5.23 6.52 -40.82 -0.27 4.96 16 39 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 40 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 41 H 0.12 1.15 5.87 -52.49 -0.31 0.85 16 42 H 0.10 0.74 8.14 -51.92 -0.42 0.32 16 43 H 0.08 0.66 7.76 -51.92 -0.40 0.26 16 44 H 0.08 0.62 7.73 -51.92 -0.40 0.22 16 45 H 0.15 3.21 6.22 -52.49 -0.33 2.89 16 LS Contribution 383.14 15.07 5.77 5.77 Total: -1.00 -33.42 383.14 -10.85 -44.27 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -7.03 Total: 4.28 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: -2.44 Total: -2.55 kcal Atomic # 7 Polarization: -50.58 SS G_CDS: 0.22 Total: -50.36 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: 0.07 Total: -14.45 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.43 Total: -3.94 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.42 -10.85 -44.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188035704.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.899 kcal (2) G-P(sol) polarization free energy of solvation -33.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds