Wall clock time and date at job start Tue Mar 31 2020 14:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.46825 * 2 1 4 4 C 1.53003 * 109.46513 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.46694 * 180.02562 * 4 3 2 6 6 C 1.46507 * 119.99604 * 269.99730 * 5 4 3 7 7 C 1.50698 * 109.46788 * 270.00112 * 6 5 4 8 8 H 1.07996 * 120.00252 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99504 * 179.97438 * 7 6 5 10 10 N 1.31513 * 120.00482 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99769 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47214 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.47165 * 120.00233 * 11 9 7 14 14 H 1.48501 * 109.47342 * 240.00173 * 11 9 7 15 15 C 1.34774 * 120.00286 * 89.99572 * 5 4 3 16 16 O 1.21585 * 119.99795 * 179.97438 * 15 5 4 17 17 N 1.34767 * 120.00268 * 0.02562 * 15 5 4 18 18 C 1.39945 * 120.00452 * 184.58798 * 17 15 5 19 19 C 1.38953 * 120.03459 * 144.87421 * 18 17 15 20 20 C 1.38161 * 120.09381 * 180.02562 * 19 18 17 21 21 C 1.38153 * 120.14780 * 359.68111 * 20 19 18 22 22 C 1.39008 * 120.05257 * 0.59445 * 21 20 19 23 23 S 1.76198 * 120.04217 * 179.69488 * 22 21 20 24 24 C 1.81401 * 103.00124 * 359.73180 * 23 22 21 25 25 C 1.38692 * 120.02275 * 324.89873 * 18 17 15 26 26 H 1.08999 * 109.46810 * 299.99651 * 1 2 3 27 27 H 1.08994 * 109.47317 * 60.00107 * 1 2 3 28 28 H 1.08995 * 109.47176 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.46786 * 239.99897 * 2 1 3 30 30 H 1.09002 * 109.47029 * 119.99859 * 2 1 3 31 31 H 1.08999 * 109.47142 * 60.00552 * 3 2 1 32 32 H 1.08994 * 109.47086 * 300.00034 * 3 2 1 33 33 H 1.08994 * 109.47100 * 59.99896 * 4 3 2 34 34 H 1.09002 * 109.47027 * 299.99667 * 4 3 2 35 35 H 1.09003 * 109.46827 * 30.00236 * 6 5 4 36 36 H 1.08997 * 109.47197 * 149.99842 * 6 5 4 37 37 H 0.96993 * 120.00671 * 179.97438 * 10 9 7 38 38 H 0.97004 * 120.00008 * 4.58662 * 17 15 5 39 39 H 1.08006 * 119.95373 * 0.02737 * 19 18 17 40 40 H 1.07999 * 119.92925 * 180.02562 * 20 19 18 41 41 H 1.07993 * 119.97503 * 180.29952 * 21 20 19 42 42 H 1.09000 * 109.47325 * 179.97438 * 24 23 22 43 43 H 1.09002 * 109.47061 * 299.99944 * 24 23 22 44 44 H 1.08999 * 109.47231 * 59.99665 * 24 23 22 45 45 H 1.08001 * 120.08067 * 359.97438 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8238 0.0000 6 6 4.3020 3.5151 -1.2686 7 6 5.7251 3.2784 -1.7042 8 1 6.3822 2.6733 -1.0972 9 6 6.1879 3.8337 -2.8784 10 7 5.3877 4.5701 -3.6178 11 14 7.9521 3.5410 -3.4181 12 1 8.6402 2.6853 -2.4183 13 1 7.9596 2.8621 -4.7388 14 1 8.6590 4.8425 -3.5266 15 6 4.2834 3.4585 1.1674 16 8 4.6891 4.6046 1.1678 17 7 4.0597 2.8224 2.3343 18 6 4.2009 3.5106 3.5447 19 6 3.3586 3.2215 4.6114 20 6 3.4965 3.9005 5.8067 21 6 4.4761 4.8644 5.9481 22 6 5.3183 5.1625 4.8832 23 16 6.5623 6.3975 5.0613 24 6 6.3298 6.9679 6.7676 25 6 5.1813 4.4821 3.6803 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.6767 1.9564 -0.8899 33 1 3.9329 0.9288 -0.8908 34 1 3.9337 0.9285 0.8892 35 1 3.6208 3.1313 -2.0281 36 1 4.1351 4.5842 -1.1376 37 1 5.7133 4.9610 -4.4436 38 1 3.8009 1.8876 2.3353 39 1 2.5951 2.4649 4.5059 40 1 2.8407 3.6734 6.6342 41 1 4.5845 5.3900 6.8853 42 1 7.0585 7.7465 6.9930 43 1 5.3225 7.3682 6.8827 44 1 6.4687 6.1314 7.4524 45 1 5.8372 4.7086 2.8527 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188035704.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:58 Heat of formation + Delta-G solvation = -27.753049 kcal Electronic energy + Delta-G solvation = -24844.473042 eV Core-core repulsion = 21373.220768 eV Total energy + Delta-G solvation = -3471.252274 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.74693 -39.72238 -37.52381 -36.01605 -35.34278 -34.41897 -31.95634 -31.20094 -30.30626 -29.54353 -28.47009 -25.25901 -24.75469 -24.00691 -23.12270 -22.02227 -20.84343 -19.66056 -18.70755 -18.46286 -17.46232 -17.20771 -16.72666 -16.52712 -16.22318 -15.86199 -15.49762 -15.16805 -15.07210 -14.74657 -14.63965 -14.37456 -14.34906 -13.97457 -13.74910 -13.51407 -13.42814 -13.31193 -12.87692 -12.80140 -12.63122 -12.49963 -12.39389 -12.26507 -12.12547 -11.83923 -11.70020 -11.57676 -11.42865 -11.18818 -10.88579 -10.65541 -10.52859 -9.61026 -9.10549 -8.41960 -8.22890 -6.37722 0.20436 0.39176 0.57302 1.34101 1.37262 1.48287 1.55164 1.69938 2.13196 2.37475 2.78963 2.96163 3.06990 3.92637 3.96594 4.03392 4.13918 4.23609 4.25771 4.29368 4.30671 4.36679 4.48890 4.55988 4.61272 4.77979 4.78514 4.84268 4.88740 4.90557 5.04101 5.12246 5.17269 5.27203 5.31566 5.35880 5.39183 5.40214 5.50769 5.51697 5.56408 5.78587 6.02303 6.04949 6.07714 6.71040 7.02857 7.29349 7.61109 8.83768 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.008602 B = 0.004247 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3254.212875 B = 6591.254259 C = 9453.890334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C -0.130 4.130 4 C 0.108 3.892 5 N -0.611 5.611 6 C 0.281 3.719 7 C -0.542 4.542 8 H 0.050 0.950 9 C 0.010 3.990 10 N -0.927 5.927 11 Si 0.965 3.035 12 H -0.270 1.270 13 H -0.266 1.266 14 H -0.283 1.283 15 C 0.693 3.307 16 O -0.620 6.620 17 N -0.675 5.675 18 C 0.169 3.831 19 C -0.147 4.147 20 C -0.071 4.071 21 C -0.153 4.153 22 C -0.074 4.074 23 S -0.185 6.185 24 C -0.126 4.126 25 C -0.138 4.138 26 H 0.057 0.943 27 H 0.043 0.957 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.083 0.917 31 H 0.063 0.937 32 H 0.045 0.955 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.028 0.972 36 H -0.004 1.004 37 H 0.267 0.733 38 H 0.420 0.580 39 H 0.160 0.840 40 H 0.173 0.827 41 H 0.153 0.847 42 H 0.123 0.877 43 H 0.096 0.904 44 H 0.101 0.899 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.618 -7.923 22.041 24.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.153 4.153 3 C -0.169 4.169 4 C -0.015 4.015 5 N -0.344 5.344 6 C 0.159 3.841 7 C -0.581 4.581 8 H 0.069 0.931 9 C -0.189 4.189 10 N -0.566 5.566 11 Si 0.790 3.210 12 H -0.194 1.194 13 H -0.191 1.191 14 H -0.209 1.209 15 C 0.395 3.605 16 O -0.500 6.500 17 N -0.326 5.326 18 C 0.072 3.928 19 C -0.170 4.170 20 C -0.091 4.091 21 C -0.177 4.177 22 C -0.187 4.187 23 S 0.057 5.943 24 C -0.294 4.294 25 C -0.164 4.164 26 H 0.076 0.924 27 H 0.062 0.938 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.102 0.898 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.097 0.903 34 H 0.109 0.891 35 H 0.046 0.954 36 H 0.014 0.986 37 H 0.076 0.924 38 H 0.260 0.740 39 H 0.177 0.823 40 H 0.190 0.810 41 H 0.171 0.829 42 H 0.142 0.858 43 H 0.115 0.885 44 H 0.119 0.881 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.465 -6.554 21.022 22.950 hybrid contribution 0.117 -0.382 -0.465 0.613 sum -6.348 -6.936 20.557 22.606 Atomic orbital electron populations 1.21752 0.95197 1.02222 1.01615 1.21444 0.96397 0.94334 1.03150 1.22007 0.94177 0.98812 1.01867 1.21757 0.94784 0.81271 1.03680 1.47442 1.67198 1.15118 1.04658 1.18631 0.95271 0.91230 0.78964 1.21730 0.97932 1.31964 1.06449 0.93147 1.25805 1.02217 0.94452 0.96402 1.70046 1.37614 1.34137 1.14847 0.85404 0.79191 0.77970 0.78448 1.19404 1.19087 1.20867 1.16145 0.78816 0.84311 0.81265 1.90878 1.53282 1.19406 1.86401 1.42593 1.72890 1.14735 1.02360 1.17699 0.94574 0.94752 0.85770 1.21249 0.99167 1.03899 0.92665 1.21283 0.96842 0.93614 0.97391 1.21469 0.97139 1.01224 0.97916 1.21630 1.00397 0.99960 0.96760 1.86039 1.42617 1.44285 1.21395 1.23756 1.07584 1.05716 0.92373 1.20807 0.99533 0.99482 0.96564 0.92425 0.93780 0.91353 0.91796 0.89828 0.91788 0.93612 0.90330 0.89127 0.95437 0.98571 0.92380 0.73993 0.82271 0.80972 0.82939 0.85840 0.88537 0.88053 0.88248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.91 71.98 0.71 -1.80 16 2 C -0.12 -2.12 5.93 30.60 0.18 -1.94 16 3 C -0.13 -3.35 5.54 30.60 0.17 -3.18 16 4 C 0.11 3.34 5.21 86.38 0.45 3.79 16 5 N -0.61 -26.91 2.46 -844.19 -2.07 -28.98 16 6 C 0.28 15.59 5.16 85.63 0.44 16.03 16 7 C -0.54 -32.17 9.39 25.60 0.24 -31.93 16 8 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 9 C 0.01 0.61 5.46 84.66 0.46 1.07 16 10 N -0.93 -57.14 13.29 21.45 0.28 -56.85 16 11 Si 0.97 46.29 29.54 68.60 2.03 48.32 16 12 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 13 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 14 H -0.28 -13.51 7.11 99.48 0.71 -12.81 16 15 C 0.69 31.30 8.12 179.06 1.45 32.75 16 16 O -0.62 -34.83 13.35 -3.98 -0.05 -34.88 16 17 N -0.67 -22.29 5.21 -317.26 -1.65 -23.95 16 18 C 0.17 5.41 6.30 38.13 0.24 5.65 16 19 C -0.15 -3.18 9.96 22.42 0.22 -2.96 16 20 C -0.07 -1.27 10.03 22.23 0.22 -1.04 16 21 C -0.15 -3.27 9.36 22.43 0.21 -3.06 16 22 C -0.07 -2.27 6.11 22.61 0.14 -2.13 16 23 S -0.18 -5.30 22.56 -56.49 -1.27 -6.57 16 24 C -0.13 -1.88 9.15 113.37 1.04 -0.84 16 25 C -0.14 -5.22 8.44 22.53 0.19 -5.03 16 26 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.08 2.59 8.07 -2.39 -0.02 2.57 16 34 H 0.09 2.18 6.30 -2.39 -0.02 2.16 16 35 H 0.03 1.54 8.07 -2.39 -0.02 1.52 16 36 H 0.00 -0.25 7.42 -2.39 -0.02 -0.27 16 37 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 38 H 0.42 10.27 6.52 -92.71 -0.60 9.67 16 39 H 0.16 2.31 8.06 -2.91 -0.02 2.28 16 40 H 0.17 1.53 8.06 -2.91 -0.02 1.50 16 41 H 0.15 2.20 5.87 -2.91 -0.02 2.19 16 42 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.10 1.21 7.76 -2.39 -0.02 1.19 16 44 H 0.10 1.15 7.73 -2.39 -0.02 1.13 16 45 H 0.10 4.77 6.22 -2.91 -0.02 4.75 16 Total: -1.00 -81.89 383.14 4.01 -77.88 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: 0.38 Total: 19.65 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: 6.38 Total: 5.38 kcal Atomic # 7 Polarization: -106.34 SS G_CDS: -3.44 Total: -109.78 kcal Atomic # 8 Polarization: -34.83 SS G_CDS: -0.05 Total: -34.88 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Atomic # 16 Polarization: -5.30 SS G_CDS: -1.27 Total: -6.57 kcal Total: -81.89 4.01 -77.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188035704.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.125 kcal (2) G-P(sol) polarization free energy of solvation -81.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds