Wall clock time and date at job start Tue Mar 31 2020 14:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47354 * 2 1 4 4 C 1.53003 * 109.46875 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46886 * 179.97438 * 4 3 2 6 6 C 1.46501 * 120.00280 * 270.00167 * 5 4 3 7 7 C 1.50702 * 109.47087 * 270.00181 * 6 5 4 8 8 H 1.08002 * 119.99841 * 359.97438 * 7 6 5 9 9 C 1.37873 * 119.99971 * 179.97438 * 7 6 5 10 10 N 1.31512 * 119.99821 * 180.02562 * 9 7 6 11 11 Si 1.86797 * 119.99905 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.47111 * 90.00519 * 11 9 7 13 13 H 1.48503 * 109.46877 * 210.00007 * 11 9 7 14 14 H 1.48496 * 109.47184 * 330.00077 * 11 9 7 15 15 C 1.34781 * 119.99760 * 90.00263 * 5 4 3 16 16 S 1.71200 * 120.00012 * 179.97438 * 15 5 4 17 17 N 1.34771 * 119.99903 * 359.97438 * 15 5 4 18 18 C 1.40098 * 120.00100 * 184.14601 * 17 15 5 19 19 C 1.38856 * 120.01619 * 135.03727 * 18 17 15 20 20 C 1.38093 * 119.97977 * 180.24003 * 19 18 17 21 21 C 1.38719 * 120.01958 * 359.48635 * 20 19 18 22 22 O 1.35978 * 119.98171 * 180.25640 * 21 20 19 23 23 C 1.42899 * 116.99565 * 180.02562 * 22 21 20 24 24 C 1.38714 * 120.02834 * 0.23971 * 21 20 19 25 25 C 1.38093 * 120.01853 * 0.02562 * 24 21 20 26 26 H 1.09001 * 109.47042 * 59.99755 * 1 2 3 27 27 H 1.08996 * 109.47681 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46872 * 299.99938 * 1 2 3 29 29 H 1.09004 * 109.46623 * 239.99605 * 2 1 3 30 30 H 1.09001 * 109.47042 * 120.00245 * 2 1 3 31 31 H 1.09001 * 109.47080 * 60.00190 * 3 2 1 32 32 H 1.08992 * 109.46849 * 299.99666 * 3 2 1 33 33 H 1.09001 * 109.47083 * 60.00226 * 4 3 2 34 34 H 1.09001 * 109.47310 * 300.00116 * 4 3 2 35 35 H 1.08993 * 109.46888 * 30.00004 * 6 5 4 36 36 H 1.08994 * 109.47038 * 150.00115 * 6 5 4 37 37 H 0.97007 * 120.00103 * 179.97438 * 10 9 7 38 38 H 0.96998 * 120.00592 * 4.15317 * 17 15 5 39 39 H 1.07999 * 120.00668 * 359.97438 * 19 18 17 40 40 H 1.08002 * 119.98899 * 179.77228 * 20 19 18 41 41 H 1.09005 * 109.47239 * 299.99882 * 23 22 21 42 42 H 1.08996 * 109.47186 * 60.00312 * 23 22 21 43 43 H 1.08997 * 109.47008 * 180.02562 * 23 22 21 44 44 H 1.08004 * 119.99204 * 180.02562 * 24 21 20 45 45 H 1.07999 * 120.00573 * 180.02562 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4423 0.0006 5 7 4.0585 2.8235 0.0000 6 6 4.3032 3.5134 -1.2690 7 6 5.7266 3.2763 -1.7033 8 1 6.3834 2.6724 -1.0947 9 6 6.1904 3.8302 -2.8776 10 7 7.4325 3.6228 -3.2569 11 14 5.0542 4.8740 -3.9306 12 1 5.1565 6.2948 -3.5107 13 1 5.4482 4.7499 -5.3570 14 1 3.6547 4.4073 -3.7612 15 6 4.2827 3.4595 1.1670 16 16 4.8540 5.0734 1.1664 17 7 4.0571 2.8250 2.3344 18 6 4.2065 3.5127 3.5458 19 6 3.2472 3.3827 4.5413 20 6 3.3927 4.0648 5.7331 21 6 4.5022 4.8713 5.9402 22 8 4.6474 5.5385 7.1161 23 6 5.8136 6.3515 7.2609 24 6 5.4638 4.9972 4.9483 25 6 5.3169 4.3200 3.7538 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6768 1.9562 -0.8900 33 1 3.9337 0.9284 -0.8891 34 1 3.9330 0.9286 0.8908 35 1 3.6227 3.1289 -2.0286 36 1 4.1362 4.5827 -1.1393 37 1 7.7587 4.0122 -4.0833 38 1 3.7913 1.8921 2.3360 39 1 2.3854 2.7517 4.3817 40 1 2.6448 3.9667 6.5061 41 1 6.7040 5.7300 7.1650 42 1 5.8205 7.1183 6.4864 43 1 5.8062 6.8259 8.2422 44 1 6.3276 5.6249 5.1103 45 1 6.0658 4.4178 2.9819 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195692646.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:19 Heat of formation + Delta-G solvation = 10.566300 kcal Electronic energy + Delta-G solvation = -24823.194258 eV Core-core repulsion = 21353.603635 eV Total energy + Delta-G solvation = -3469.590622 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.31392 -39.30415 -37.63041 -35.35805 -34.48497 -32.50840 -31.00818 -29.76690 -29.44580 -27.79577 -26.80171 -24.82035 -23.35911 -22.60094 -21.58408 -21.46709 -20.46948 -18.30281 -17.95034 -17.46731 -16.99683 -16.05844 -15.74988 -15.68891 -15.25380 -14.71470 -14.55100 -14.32743 -13.90261 -13.83818 -13.43444 -13.22674 -13.10506 -12.72910 -12.64132 -12.53174 -12.27026 -11.98120 -11.88848 -11.63132 -11.39182 -11.27622 -11.10969 -10.90365 -10.78065 -10.72947 -10.60715 -10.36987 -10.21568 -9.62511 -8.92853 -8.81566 -8.60817 -7.72759 -7.02599 -6.35299 -6.11920 -4.11523 1.29200 1.54428 2.10226 2.51783 3.15127 3.27849 3.30361 3.34296 3.39872 3.60439 3.90522 4.37655 4.68877 4.73135 4.88661 4.90656 4.96535 5.02515 5.09343 5.12136 5.20941 5.33003 5.38101 5.42639 5.45322 5.48412 5.58086 5.61208 5.65581 5.78913 5.93818 5.95784 6.03497 6.10502 6.17277 6.24762 6.50455 6.54505 6.64976 6.75645 6.88152 7.11092 7.33253 7.47898 7.48828 7.74148 8.39389 8.87139 9.45868 11.01060 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010468 B = 0.004149 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2674.189865 B = 6746.537022 C = 8911.480715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.139 4.139 4 C 0.091 3.909 5 N -0.530 5.530 6 C 0.209 3.791 7 C -0.523 4.523 8 H 0.074 0.926 9 C 0.081 3.919 10 N -0.893 5.893 11 Si 0.874 3.126 12 H -0.269 1.269 13 H -0.286 1.286 14 H -0.268 1.268 15 C 0.558 3.442 16 S -0.633 6.633 17 N -0.647 5.647 18 C 0.101 3.899 19 C -0.090 4.090 20 C -0.154 4.154 21 C 0.123 3.877 22 O -0.322 6.322 23 C 0.027 3.973 24 C -0.203 4.203 25 C -0.025 4.025 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.102 0.898 34 H 0.068 0.932 35 H 0.036 0.964 36 H 0.070 0.930 37 H 0.266 0.734 38 H 0.400 0.600 39 H 0.126 0.874 40 H 0.129 0.871 41 H 0.055 0.945 42 H 0.057 0.943 43 H 0.096 0.904 44 H 0.129 0.871 45 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.648 -5.579 15.905 19.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.178 4.178 4 C -0.035 4.035 5 N -0.233 5.233 6 C 0.089 3.911 7 C -0.561 4.561 8 H 0.092 0.908 9 C -0.122 4.122 10 N -0.531 5.531 11 Si 0.700 3.300 12 H -0.194 1.194 13 H -0.212 1.212 14 H -0.193 1.193 15 C 0.200 3.800 16 S -0.497 6.497 17 N -0.277 5.277 18 C 0.007 3.993 19 C -0.111 4.111 20 C -0.174 4.174 21 C 0.078 3.922 22 O -0.235 6.235 23 C -0.068 4.068 24 C -0.223 4.223 25 C -0.049 4.049 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.121 0.879 34 H 0.086 0.914 35 H 0.054 0.946 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.239 0.761 39 H 0.144 0.856 40 H 0.147 0.853 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.114 0.886 44 H 0.147 0.853 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -10.277 -4.499 15.684 19.283 hybrid contribution -0.607 -0.614 -0.865 1.222 sum -10.884 -5.113 14.818 19.084 Atomic orbital electron populations 1.21753 0.95641 1.01540 1.01947 1.21457 0.96080 0.96011 1.02382 1.22076 0.94859 0.97582 1.03256 1.21898 0.94123 0.83376 1.04093 1.47459 1.57491 1.12508 1.05873 1.20316 0.98461 0.95332 0.77010 1.20986 0.94457 1.33476 1.07205 0.90786 1.24710 0.94920 0.95415 0.97190 1.69874 1.15023 1.44710 1.23506 0.86894 0.81182 0.82213 0.79678 1.19403 1.21151 1.19252 1.22246 0.82590 0.93895 0.81233 1.93105 1.64484 0.99406 1.92726 1.42225 1.69285 1.13398 1.02789 1.17281 0.96056 1.00910 0.85029 1.20632 0.97015 1.00350 0.93111 1.19978 0.98176 1.00793 0.98496 1.19039 0.94964 0.93061 0.85141 1.86033 1.43999 1.59501 1.33984 1.23032 0.86789 0.94066 1.02894 1.21069 1.00991 1.06084 0.94204 1.21493 0.96533 0.91891 0.94943 0.92602 0.92710 0.92840 0.91384 0.91951 0.91908 0.90732 0.87928 0.91379 0.94628 0.91266 0.92447 0.76127 0.85622 0.85282 0.92634 0.92451 0.88585 0.85291 0.82758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 37.16 0.37 -0.87 16 2 C -0.12 -1.07 5.93 -26.73 -0.16 -1.23 16 3 C -0.14 -1.57 5.54 -26.73 -0.15 -1.71 16 4 C 0.09 1.26 5.21 -4.04 -0.02 1.24 16 5 N -0.53 -10.00 2.46 -177.09 -0.43 -10.43 16 6 C 0.21 4.80 3.99 -5.19 -0.02 4.78 16 7 C -0.52 -14.30 9.94 -34.44 -0.34 -14.64 16 8 H 0.07 2.25 8.06 -52.49 -0.42 1.82 16 9 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 10 N -0.89 -26.99 13.96 55.43 0.77 -26.22 16 11 Si 0.87 21.23 27.47 -169.99 -4.67 16.56 16 12 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 13 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 14 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 15 C 0.56 10.75 7.56 -86.92 -0.66 10.09 16 16 S -0.63 -14.92 24.22 -107.50 -2.60 -17.52 16 17 N -0.65 -9.69 5.20 -11.36 -0.06 -9.74 16 18 C 0.10 1.51 5.94 -83.62 -0.50 1.01 16 19 C -0.09 -1.11 9.96 -39.41 -0.39 -1.50 16 20 C -0.15 -1.90 9.98 -39.46 -0.39 -2.29 16 21 C 0.12 1.64 6.69 -39.23 -0.26 1.38 16 22 O -0.32 -3.90 10.50 -19.67 -0.21 -4.11 16 23 C 0.03 0.24 9.81 101.05 0.99 1.23 16 24 C -0.20 -2.86 9.03 -39.46 -0.36 -3.21 16 25 C -0.03 -0.41 7.86 -39.41 -0.31 -0.72 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.10 1.48 8.07 -51.93 -0.42 1.06 16 34 H 0.07 0.77 6.31 -51.93 -0.33 0.45 16 35 H 0.04 0.78 7.13 -51.93 -0.37 0.41 16 36 H 0.07 1.74 6.01 -51.93 -0.31 1.43 16 37 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 38 H 0.40 4.68 6.52 -40.82 -0.27 4.42 16 39 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 40 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 41 H 0.06 0.43 7.66 -51.93 -0.40 0.04 16 42 H 0.06 0.49 7.66 -51.93 -0.40 0.10 16 43 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.13 1.60 6.29 -52.48 -0.33 1.27 16 45 H 0.16 2.93 6.09 -44.12 -0.27 2.66 16 LS Contribution 376.74 15.07 5.68 5.68 Total: -1.00 -33.97 376.74 -10.73 -44.70 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -6.91 Total: 5.36 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: -2.30 Total: -4.27 kcal Atomic # 7 Polarization: -46.67 SS G_CDS: 0.28 Total: -46.39 kcal Atomic # 8 Polarization: -3.90 SS G_CDS: -0.21 Total: -4.11 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.67 Total: 16.56 kcal Atomic # 16 Polarization: -14.92 SS G_CDS: -2.60 Total: -17.52 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.97 -10.73 -44.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195692646.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.267 kcal (2) G-P(sol) polarization free energy of solvation -33.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds