Wall clock time and date at job start Tue Mar 31 2020 14:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47354 * 2 1 4 4 C 1.53003 * 109.46875 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46886 * 179.97438 * 4 3 2 6 6 C 1.46501 * 120.00280 * 270.00167 * 5 4 3 7 7 C 1.50702 * 109.47087 * 270.00181 * 6 5 4 8 8 H 1.08002 * 119.99841 * 359.97438 * 7 6 5 9 9 C 1.37873 * 119.99971 * 179.97438 * 7 6 5 10 10 N 1.31512 * 119.99821 * 180.02562 * 9 7 6 11 11 Si 1.86797 * 119.99905 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.47111 * 90.00519 * 11 9 7 13 13 H 1.48503 * 109.46877 * 210.00007 * 11 9 7 14 14 H 1.48496 * 109.47184 * 330.00077 * 11 9 7 15 15 C 1.34781 * 119.99760 * 90.00263 * 5 4 3 16 16 S 1.71200 * 120.00012 * 179.97438 * 15 5 4 17 17 N 1.34771 * 119.99903 * 359.97438 * 15 5 4 18 18 C 1.40098 * 120.00100 * 184.14601 * 17 15 5 19 19 C 1.38856 * 120.01619 * 135.03727 * 18 17 15 20 20 C 1.38093 * 119.97977 * 180.24003 * 19 18 17 21 21 C 1.38719 * 120.01958 * 359.48635 * 20 19 18 22 22 O 1.35978 * 119.98171 * 180.25640 * 21 20 19 23 23 C 1.42899 * 116.99565 * 180.02562 * 22 21 20 24 24 C 1.38714 * 120.02834 * 0.23971 * 21 20 19 25 25 C 1.38093 * 120.01853 * 0.02562 * 24 21 20 26 26 H 1.09001 * 109.47042 * 59.99755 * 1 2 3 27 27 H 1.08996 * 109.47681 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46872 * 299.99938 * 1 2 3 29 29 H 1.09004 * 109.46623 * 239.99605 * 2 1 3 30 30 H 1.09001 * 109.47042 * 120.00245 * 2 1 3 31 31 H 1.09001 * 109.47080 * 60.00190 * 3 2 1 32 32 H 1.08992 * 109.46849 * 299.99666 * 3 2 1 33 33 H 1.09001 * 109.47083 * 60.00226 * 4 3 2 34 34 H 1.09001 * 109.47310 * 300.00116 * 4 3 2 35 35 H 1.08993 * 109.46888 * 30.00004 * 6 5 4 36 36 H 1.08994 * 109.47038 * 150.00115 * 6 5 4 37 37 H 0.97007 * 120.00103 * 179.97438 * 10 9 7 38 38 H 0.96998 * 120.00592 * 4.15317 * 17 15 5 39 39 H 1.07999 * 120.00668 * 359.97438 * 19 18 17 40 40 H 1.08002 * 119.98899 * 179.77228 * 20 19 18 41 41 H 1.09005 * 109.47239 * 299.99882 * 23 22 21 42 42 H 1.08996 * 109.47186 * 60.00312 * 23 22 21 43 43 H 1.08997 * 109.47008 * 180.02562 * 23 22 21 44 44 H 1.08004 * 119.99204 * 180.02562 * 24 21 20 45 45 H 1.07999 * 120.00573 * 180.02562 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4423 0.0006 5 7 4.0585 2.8235 0.0000 6 6 4.3032 3.5134 -1.2690 7 6 5.7266 3.2763 -1.7033 8 1 6.3834 2.6724 -1.0947 9 6 6.1904 3.8302 -2.8776 10 7 7.4325 3.6228 -3.2569 11 14 5.0542 4.8740 -3.9306 12 1 5.1565 6.2948 -3.5107 13 1 5.4482 4.7499 -5.3570 14 1 3.6547 4.4073 -3.7612 15 6 4.2827 3.4595 1.1670 16 16 4.8540 5.0734 1.1664 17 7 4.0571 2.8250 2.3344 18 6 4.2065 3.5127 3.5458 19 6 3.2472 3.3827 4.5413 20 6 3.3927 4.0648 5.7331 21 6 4.5022 4.8713 5.9402 22 8 4.6474 5.5385 7.1161 23 6 5.8136 6.3515 7.2609 24 6 5.4638 4.9972 4.9483 25 6 5.3169 4.3200 3.7538 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6768 1.9562 -0.8900 33 1 3.9337 0.9284 -0.8891 34 1 3.9330 0.9286 0.8908 35 1 3.6227 3.1289 -2.0286 36 1 4.1362 4.5827 -1.1393 37 1 7.7587 4.0122 -4.0833 38 1 3.7913 1.8921 2.3360 39 1 2.3854 2.7517 4.3817 40 1 2.6448 3.9667 6.5061 41 1 6.7040 5.7300 7.1650 42 1 5.8205 7.1183 6.4864 43 1 5.8062 6.8259 8.2422 44 1 6.3276 5.6249 5.1103 45 1 6.0658 4.4178 2.9819 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195692646.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:18 Heat of formation + Delta-G solvation = -9.283831 kcal Electronic energy + Delta-G solvation = -24824.055024 eV Core-core repulsion = 21353.603635 eV Total energy + Delta-G solvation = -3470.451389 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.48175 -40.52748 -38.76833 -36.36500 -35.79234 -34.47954 -32.07794 -31.08723 -30.61970 -29.15350 -27.83413 -25.97205 -24.95262 -23.80430 -22.81504 -22.34339 -21.75878 -19.54404 -19.18249 -19.04556 -18.75363 -17.13181 -17.03120 -16.58752 -16.39800 -16.32242 -15.90882 -15.39461 -15.37055 -14.84728 -14.54730 -14.50185 -14.23084 -14.11846 -13.82186 -13.66377 -13.55775 -13.31242 -13.00560 -12.78257 -12.61109 -12.49545 -12.28239 -12.15213 -12.07759 -11.86650 -11.85001 -11.79317 -11.70496 -11.49381 -10.80626 -10.24236 -10.00609 -8.96327 -8.76074 -8.31616 -8.08523 -6.35212 0.04292 0.45553 0.72251 0.98442 1.32561 1.41419 1.43978 1.65006 2.28284 2.32609 2.43092 2.81300 3.05157 3.69614 3.81062 3.91814 3.97022 4.08762 4.23278 4.27334 4.37902 4.41798 4.42584 4.44631 4.55222 4.61944 4.66417 4.72619 4.75870 4.85211 4.91388 4.93462 5.03419 5.13165 5.25135 5.27698 5.30921 5.36990 5.41602 5.46067 5.46667 5.63412 5.70976 5.92855 6.22723 6.36267 6.48374 6.62696 7.25807 8.85224 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010468 B = 0.004149 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2674.189865 B = 6746.537022 C = 8911.480715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C -0.128 4.128 4 C 0.085 3.915 5 N -0.533 5.533 6 C 0.222 3.778 7 C -0.518 4.518 8 H 0.030 0.970 9 C 0.022 3.978 10 N -0.943 5.943 11 Si 0.938 3.062 12 H -0.281 1.281 13 H -0.277 1.277 14 H -0.236 1.236 15 C 0.577 3.423 16 S -0.732 6.732 17 N -0.617 5.617 18 C 0.075 3.925 19 C -0.071 4.071 20 C -0.152 4.152 21 C 0.124 3.876 22 O -0.327 6.327 23 C 0.019 3.981 24 C -0.211 4.211 25 C -0.046 4.046 26 H 0.048 0.952 27 H 0.066 0.934 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.058 0.942 36 H 0.050 0.950 37 H 0.267 0.733 38 H 0.420 0.580 39 H 0.163 0.837 40 H 0.158 0.842 41 H 0.062 0.938 42 H 0.054 0.946 43 H 0.124 0.876 44 H 0.136 0.864 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.972 -7.115 17.677 23.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C -0.167 4.167 4 C -0.039 4.039 5 N -0.235 5.235 6 C 0.100 3.900 7 C -0.556 4.556 8 H 0.048 0.952 9 C -0.177 4.177 10 N -0.583 5.583 11 Si 0.762 3.238 12 H -0.206 1.206 13 H -0.203 1.203 14 H -0.159 1.159 15 C 0.215 3.785 16 S -0.599 6.599 17 N -0.247 5.247 18 C -0.018 4.018 19 C -0.092 4.092 20 C -0.171 4.171 21 C 0.078 3.922 22 O -0.241 6.241 23 C -0.076 4.076 24 C -0.231 4.231 25 C -0.069 4.069 26 H 0.067 0.933 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.263 0.737 39 H 0.180 0.820 40 H 0.176 0.824 41 H 0.080 0.920 42 H 0.072 0.928 43 H 0.142 0.858 44 H 0.153 0.847 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -13.638 -6.109 17.528 23.033 hybrid contribution 0.492 -0.215 -1.193 1.309 sum -13.146 -6.324 16.334 21.900 Atomic orbital electron populations 1.21750 0.94971 1.02302 1.01830 1.21445 0.96555 0.94116 1.03326 1.22000 0.92373 0.99406 1.02922 1.22277 0.96073 0.80334 1.05255 1.47367 1.57392 1.14260 1.04475 1.19900 0.95976 0.94934 0.79229 1.21143 0.96086 1.32083 1.06333 0.95196 1.25607 0.96413 0.96796 0.98855 1.70022 1.17281 1.46565 1.24427 0.85857 0.80728 0.79375 0.77855 1.20650 1.20271 1.15889 1.21682 0.81946 0.92322 0.82556 1.93284 1.68584 1.04178 1.93806 1.42021 1.67164 1.13995 1.01552 1.17499 0.96920 1.01962 0.85444 1.20935 0.96844 0.99662 0.91746 1.20399 0.98126 0.99593 0.99008 1.19229 0.94850 0.92944 0.85172 1.86035 1.45353 1.59566 1.33132 1.23304 0.86024 0.93824 1.04416 1.21130 1.01932 1.06061 0.94012 1.21253 0.96807 0.93708 0.95116 0.93328 0.91538 0.92412 0.91451 0.90089 0.91308 0.92086 0.88546 0.88590 0.92376 0.93182 0.92365 0.73737 0.81969 0.82391 0.91968 0.92755 0.85773 0.84667 0.86468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.91 71.98 0.71 -1.25 16 2 C -0.12 -1.64 5.93 30.59 0.18 -1.46 16 3 C -0.13 -2.52 5.54 30.60 0.17 -2.35 16 4 C 0.08 2.16 5.21 86.38 0.45 2.61 16 5 N -0.53 -19.85 2.46 -714.18 -1.75 -21.60 16 6 C 0.22 10.20 3.99 85.63 0.34 10.55 16 7 C -0.52 -29.26 9.94 25.60 0.25 -29.01 16 8 H 0.03 1.91 8.06 -2.91 -0.02 1.88 16 9 C 0.02 1.27 5.47 84.65 0.46 1.73 16 10 N -0.94 -59.14 13.96 21.45 0.30 -58.84 16 11 Si 0.94 44.28 27.47 68.60 1.88 46.16 16 12 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 13 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 14 H -0.24 -9.82 6.54 99.48 0.65 -9.17 16 15 C 0.58 22.31 7.56 179.05 1.35 23.67 16 16 S -0.73 -36.21 24.22 -56.49 -1.37 -37.57 16 17 N -0.62 -17.62 5.20 -189.87 -0.99 -18.60 16 18 C 0.07 2.15 5.94 38.11 0.23 2.38 16 19 C -0.07 -1.52 9.96 22.38 0.22 -1.30 16 20 C -0.15 -3.23 9.98 22.35 0.22 -3.00 16 21 C 0.12 3.08 6.69 22.50 0.15 3.23 16 22 O -0.33 -7.25 10.50 -93.30 -0.98 -8.23 16 23 C 0.02 0.30 9.81 113.37 1.11 1.41 16 24 C -0.21 -5.99 9.03 22.35 0.20 -5.79 16 25 C -0.05 -1.53 7.86 22.38 0.18 -1.36 16 26 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.07 0.72 8.14 -2.39 -0.02 0.71 16 28 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 30 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.10 2.64 8.07 -2.39 -0.02 2.62 16 34 H 0.10 1.89 6.31 -2.39 -0.02 1.87 16 35 H 0.06 2.44 7.13 -2.39 -0.02 2.43 16 36 H 0.05 2.56 6.01 -2.39 -0.01 2.54 16 37 H 0.27 15.70 8.31 -92.70 -0.77 14.93 16 38 H 0.42 8.56 6.52 -92.71 -0.60 7.95 16 39 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 40 H 0.16 2.49 8.06 -2.91 -0.02 2.46 16 41 H 0.06 0.90 7.66 -2.38 -0.02 0.88 16 42 H 0.05 0.90 7.66 -2.39 -0.02 0.88 16 43 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.14 3.48 6.29 -2.91 -0.02 3.46 16 45 H 0.12 4.83 6.09 -8.23 -0.05 4.78 16 Total: -1.00 -79.67 376.74 3.63 -76.05 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: 0.29 Total: 22.60 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: 6.24 Total: 0.05 kcal Atomic # 7 Polarization: -96.61 SS G_CDS: -2.44 Total: -99.05 kcal Atomic # 8 Polarization: -7.25 SS G_CDS: -0.98 Total: -8.23 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.88 Total: 46.16 kcal Atomic # 16 Polarization: -36.21 SS G_CDS: -1.37 Total: -37.57 kcal Total: -79.67 3.63 -76.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195692646.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.762 kcal (2) G-P(sol) polarization free energy of solvation -79.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds