Wall clock time and date at job start Tue Mar 31 2020 14:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52997 * 109.46934 * 2 1 4 4 C 1.53005 * 109.46804 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46997 * 180.02562 * 4 3 2 6 6 C 1.46502 * 120.00156 * 270.00440 * 5 4 3 7 7 C 1.50702 * 109.46994 * 269.99887 * 6 5 4 8 8 H 1.07994 * 119.99833 * 0.02562 * 7 6 5 9 9 C 1.37874 * 119.99663 * 179.97438 * 7 6 5 10 10 N 1.31514 * 120.00308 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99678 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47244 * 90.00423 * 11 9 7 13 13 H 1.48502 * 109.47086 * 210.00351 * 11 9 7 14 14 H 1.48503 * 109.47376 * 330.00227 * 11 9 7 15 15 C 1.34778 * 119.99651 * 90.00552 * 5 4 3 16 16 S 1.71203 * 120.00045 * 359.97438 * 15 5 4 17 17 N 1.34780 * 119.99940 * 180.27519 * 15 5 4 18 18 C 1.40111 * 119.99889 * 174.22433 * 17 15 5 19 19 C 1.38725 * 120.08766 * 315.73108 * 18 17 15 20 20 C 1.38202 * 119.97794 * 180.02562 * 19 18 17 21 21 C 1.38268 * 120.17125 * 0.02802 * 20 19 18 22 22 C 1.38260 * 120.17278 * 359.97438 * 21 20 19 23 23 C 1.38537 * 120.01626 * 359.67889 * 22 21 20 24 24 O 1.35988 * 120.08268 * 180.31455 * 23 22 21 25 25 C 1.42897 * 116.99973 * 0.30515 * 24 23 22 26 26 H 1.08992 * 109.46803 * 299.99888 * 1 2 3 27 27 H 1.08998 * 109.46927 * 59.99854 * 1 2 3 28 28 H 1.08998 * 109.46870 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46919 * 240.00513 * 2 1 3 30 30 H 1.08996 * 109.46733 * 120.00649 * 2 1 3 31 31 H 1.08998 * 109.46899 * 60.00500 * 3 2 1 32 32 H 1.08998 * 109.47432 * 299.99836 * 3 2 1 33 33 H 1.08998 * 109.46714 * 60.00718 * 4 3 2 34 34 H 1.08998 * 109.47262 * 300.00271 * 4 3 2 35 35 H 1.09001 * 109.47139 * 30.00188 * 6 5 4 36 36 H 1.09003 * 109.46696 * 150.00069 * 6 5 4 37 37 H 0.96995 * 120.00015 * 179.97438 * 10 9 7 38 38 H 0.97004 * 119.99462 * 354.22570 * 17 15 5 39 39 H 1.07998 * 120.00820 * 359.97438 * 19 18 17 40 40 H 1.08005 * 119.91558 * 180.02562 * 20 19 18 41 41 H 1.07989 * 119.91818 * 179.97438 * 21 20 19 42 42 H 1.08004 * 119.98905 * 180.02562 * 22 21 20 43 43 H 1.09000 * 109.47192 * 59.99769 * 25 24 23 44 44 H 1.09002 * 109.46839 * 179.97438 * 25 24 23 45 45 H 1.09002 * 109.47012 * 299.99917 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 7 4.0584 2.8237 0.0013 6 6 4.3031 3.5147 -1.2672 7 6 5.7265 3.2781 -1.7017 8 1 6.3831 2.6731 -1.0941 9 6 6.1902 3.8331 -2.8756 10 7 5.3905 4.5694 -3.6157 11 14 7.9548 3.5404 -3.4139 12 1 8.0192 2.3193 -4.2566 13 1 8.4337 4.7079 -4.1967 14 1 8.8145 3.3612 -2.2163 15 6 4.2827 3.4586 1.1688 16 16 3.9962 2.6512 2.6511 17 7 4.7266 4.7312 1.1694 18 6 4.8444 5.4314 2.3773 19 6 3.8304 5.3646 3.3216 20 6 3.9487 6.0566 4.5121 21 6 5.0757 6.8168 4.7649 22 6 6.0903 6.8881 3.8284 23 6 5.9827 6.1917 2.6356 24 8 6.9826 6.2558 1.7163 25 6 8.1193 7.0554 2.0488 26 1 -0.3632 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9562 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9337 0.9286 -0.8892 34 1 3.9331 0.9287 0.8908 35 1 3.6225 3.1309 -2.0272 36 1 4.1360 4.5839 -1.1364 37 1 5.7168 4.9602 -4.4413 38 1 4.9646 5.1622 0.3336 39 1 2.9485 4.7726 3.1263 40 1 3.1588 6.0035 5.2468 41 1 5.1637 7.3562 5.6963 42 1 6.9694 7.4825 4.0291 43 1 8.5813 6.6701 2.9577 44 1 8.8401 7.0197 1.2319 45 1 7.8036 8.0861 2.2105 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196239951.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:27 Heat of formation + Delta-G solvation = -3.652695 kcal Electronic energy + Delta-G solvation = -25373.394886 eV Core-core repulsion = 21903.187682 eV Total energy + Delta-G solvation = -3470.207204 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.29961 -38.75363 -37.27011 -35.66435 -34.16207 -32.91910 -30.04630 -29.84260 -28.91781 -27.60360 -27.01963 -24.37311 -23.71192 -22.15640 -21.91125 -20.90067 -20.29250 -18.44487 -17.47363 -17.14669 -16.75997 -15.92226 -15.58211 -15.33382 -15.04308 -14.83916 -14.47761 -14.38969 -13.85266 -13.65466 -13.62439 -13.06211 -12.73834 -12.63323 -12.33894 -12.15477 -11.93177 -11.73783 -11.47777 -11.23318 -11.09878 -11.04045 -10.95659 -10.90556 -10.88074 -10.79258 -10.64461 -10.30314 -10.11020 -9.97012 -9.09044 -8.79768 -8.34666 -7.62669 -7.07865 -6.60305 -6.39655 -4.51086 1.37202 1.68105 2.23485 2.65014 3.11732 3.19131 3.21929 3.25545 3.42156 3.95506 4.05223 4.19550 4.93381 4.96065 5.07855 5.17784 5.20847 5.21779 5.22986 5.34683 5.39462 5.56185 5.59385 5.62044 5.75865 5.89653 5.93854 6.01292 6.03199 6.07416 6.22939 6.31550 6.35142 6.37691 6.48683 6.54591 6.66673 6.71846 6.77928 6.87362 7.00932 7.21047 7.47536 7.54230 7.70298 7.72849 7.96454 8.56787 9.18888 10.65899 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.007708 B = 0.006176 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3631.851736 B = 4532.921509 C = 7636.552553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C -0.129 4.129 4 C 0.112 3.888 5 N -0.534 5.534 6 C 0.222 3.778 7 C -0.547 4.547 8 H 0.066 0.934 9 C 0.071 3.929 10 N -0.887 5.887 11 Si 0.903 3.097 12 H -0.277 1.277 13 H -0.283 1.283 14 H -0.271 1.271 15 C 0.575 3.425 16 S -0.703 6.703 17 N -0.625 5.625 18 C 0.117 3.883 19 C -0.035 4.035 20 C -0.152 4.152 21 C -0.086 4.086 22 C -0.209 4.209 23 C 0.119 3.881 24 O -0.310 6.310 25 C 0.031 3.969 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.083 0.917 34 H 0.104 0.896 35 H 0.053 0.947 36 H 0.036 0.964 37 H 0.269 0.731 38 H 0.421 0.579 39 H 0.145 0.855 40 H 0.124 0.876 41 H 0.121 0.879 42 H 0.127 0.873 43 H 0.053 0.947 44 H 0.098 0.902 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.392 3.548 8.924 9.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.155 4.155 3 C -0.168 4.168 4 C -0.011 4.011 5 N -0.235 5.235 6 C 0.100 3.900 7 C -0.586 4.586 8 H 0.084 0.916 9 C -0.134 4.134 10 N -0.524 5.524 11 Si 0.730 3.270 12 H -0.202 1.202 13 H -0.209 1.209 14 H -0.195 1.195 15 C 0.213 3.787 16 S -0.572 6.572 17 N -0.253 5.253 18 C 0.022 3.978 19 C -0.057 4.057 20 C -0.172 4.172 21 C -0.105 4.105 22 C -0.228 4.228 23 C 0.071 3.929 24 O -0.222 6.222 25 C -0.065 4.065 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.102 0.898 34 H 0.122 0.878 35 H 0.071 0.929 36 H 0.054 0.946 37 H 0.079 0.921 38 H 0.263 0.737 39 H 0.163 0.837 40 H 0.142 0.858 41 H 0.139 0.861 42 H 0.145 0.855 43 H 0.072 0.928 44 H 0.117 0.883 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.585 2.965 9.318 10.114 hybrid contribution 1.542 0.692 -1.545 2.289 sum -1.044 3.657 7.773 8.654 Atomic orbital electron populations 1.21740 0.96096 1.01107 1.01698 1.21386 0.95576 0.96532 1.02051 1.21878 0.95107 0.97248 1.02556 1.21885 0.94012 0.80539 1.04668 1.47576 1.56498 1.14411 1.05053 1.19800 0.98379 0.92683 0.79128 1.21355 0.95749 1.33858 1.07632 0.91619 1.24931 0.98437 0.94225 0.95796 1.69910 1.35976 1.32270 1.14232 0.86398 0.83743 0.78021 0.78877 1.20249 1.20855 1.19550 1.22021 0.81065 0.83946 0.91666 1.92936 1.77856 1.69357 1.17053 1.42151 1.63411 1.10272 1.09471 1.16769 0.93399 0.98607 0.89044 1.21162 0.97795 0.94281 0.92470 1.20820 0.99023 0.99677 0.97642 1.20868 0.93331 0.98072 0.98209 1.20926 1.01897 1.05459 0.94560 1.18896 0.87125 0.97631 0.89208 1.86181 1.27342 1.67090 1.41633 1.23024 0.86935 0.94159 1.02353 0.92769 0.92994 0.93084 0.92156 0.91606 0.90883 0.92277 0.89823 0.87822 0.92880 0.94644 0.92143 0.73715 0.83726 0.85787 0.86111 0.85516 0.92799 0.88343 0.92843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.91 37.16 0.37 -1.34 16 2 C -0.12 -1.52 5.93 -26.73 -0.16 -1.68 16 3 C -0.13 -2.00 5.54 -26.73 -0.15 -2.15 16 4 C 0.11 2.01 5.17 -4.04 -0.02 1.99 16 5 N -0.53 -10.87 2.46 -177.08 -0.43 -11.30 16 6 C 0.22 5.01 4.88 -5.19 -0.03 4.98 16 7 C -0.55 -13.74 9.39 -34.44 -0.32 -14.07 16 8 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 9 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 10 N -0.89 -23.38 13.29 55.43 0.74 -22.65 16 11 Si 0.90 20.12 29.54 -169.99 -5.02 15.10 16 12 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 13 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 14 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 15 C 0.58 11.97 7.46 -86.91 -0.65 11.32 16 16 S -0.70 -15.23 24.64 -107.50 -2.65 -17.88 16 17 N -0.62 -12.39 4.92 -11.28 -0.06 -12.45 16 18 C 0.12 2.12 5.85 -83.50 -0.49 1.63 16 19 C -0.03 -0.58 7.88 -39.41 -0.31 -0.89 16 20 C -0.15 -2.10 10.04 -39.58 -0.40 -2.49 16 21 C -0.09 -1.08 10.04 -39.56 -0.40 -1.48 16 22 C -0.21 -2.83 9.04 -39.46 -0.36 -3.18 16 23 C 0.12 1.99 6.70 -39.08 -0.26 1.73 16 24 O -0.31 -5.24 10.21 -19.70 -0.20 -5.44 16 25 C 0.03 0.36 9.81 101.05 0.99 1.35 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.07 1.23 8.11 -51.93 -0.42 0.81 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.08 1.48 8.07 -51.93 -0.42 1.06 16 34 H 0.10 1.96 6.58 -51.93 -0.34 1.61 16 35 H 0.05 1.25 8.07 -51.93 -0.42 0.83 16 36 H 0.04 0.83 6.44 -51.93 -0.33 0.50 16 37 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 38 H 0.42 8.65 6.60 -40.82 -0.27 8.38 16 39 H 0.15 2.56 6.52 -52.49 -0.34 2.22 16 40 H 0.12 1.42 8.06 -52.48 -0.42 0.99 16 41 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 42 H 0.13 1.37 6.30 -52.48 -0.33 1.04 16 43 H 0.05 0.56 7.68 -51.93 -0.40 0.16 16 44 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.05 0.52 7.65 -51.93 -0.40 0.12 16 LS Contribution 380.73 15.07 5.74 5.74 Total: -1.00 -29.02 380.73 -11.19 -40.21 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: -7.02 Total: 11.24 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: -2.27 Total: -2.57 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: 0.25 Total: -46.40 kcal Atomic # 8 Polarization: -5.24 SS G_CDS: -0.20 Total: -5.44 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Atomic # 16 Polarization: -15.23 SS G_CDS: -2.65 Total: -17.88 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.02 -11.19 -40.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196239951.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.558 kcal (2) G-P(sol) polarization free energy of solvation -29.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds