Wall clock time and date at job start Tue Mar 31 2020 14:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52997 * 109.46934 * 2 1 4 4 C 1.53005 * 109.46804 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46997 * 180.02562 * 4 3 2 6 6 C 1.46502 * 120.00156 * 270.00440 * 5 4 3 7 7 C 1.50702 * 109.46994 * 269.99887 * 6 5 4 8 8 H 1.07994 * 119.99833 * 0.02562 * 7 6 5 9 9 C 1.37874 * 119.99663 * 179.97438 * 7 6 5 10 10 N 1.31514 * 120.00308 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99678 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47244 * 90.00423 * 11 9 7 13 13 H 1.48502 * 109.47086 * 210.00351 * 11 9 7 14 14 H 1.48503 * 109.47376 * 330.00227 * 11 9 7 15 15 C 1.34778 * 119.99651 * 90.00552 * 5 4 3 16 16 S 1.71203 * 120.00045 * 359.97438 * 15 5 4 17 17 N 1.34780 * 119.99940 * 180.27519 * 15 5 4 18 18 C 1.40111 * 119.99889 * 174.22433 * 17 15 5 19 19 C 1.38725 * 120.08766 * 315.73108 * 18 17 15 20 20 C 1.38202 * 119.97794 * 180.02562 * 19 18 17 21 21 C 1.38268 * 120.17125 * 0.02802 * 20 19 18 22 22 C 1.38260 * 120.17278 * 359.97438 * 21 20 19 23 23 C 1.38537 * 120.01626 * 359.67889 * 22 21 20 24 24 O 1.35988 * 120.08268 * 180.31455 * 23 22 21 25 25 C 1.42897 * 116.99973 * 0.30515 * 24 23 22 26 26 H 1.08992 * 109.46803 * 299.99888 * 1 2 3 27 27 H 1.08998 * 109.46927 * 59.99854 * 1 2 3 28 28 H 1.08998 * 109.46870 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46919 * 240.00513 * 2 1 3 30 30 H 1.08996 * 109.46733 * 120.00649 * 2 1 3 31 31 H 1.08998 * 109.46899 * 60.00500 * 3 2 1 32 32 H 1.08998 * 109.47432 * 299.99836 * 3 2 1 33 33 H 1.08998 * 109.46714 * 60.00718 * 4 3 2 34 34 H 1.08998 * 109.47262 * 300.00271 * 4 3 2 35 35 H 1.09001 * 109.47139 * 30.00188 * 6 5 4 36 36 H 1.09003 * 109.46696 * 150.00069 * 6 5 4 37 37 H 0.96995 * 120.00015 * 179.97438 * 10 9 7 38 38 H 0.97004 * 119.99462 * 354.22570 * 17 15 5 39 39 H 1.07998 * 120.00820 * 359.97438 * 19 18 17 40 40 H 1.08005 * 119.91558 * 180.02562 * 20 19 18 41 41 H 1.07989 * 119.91818 * 179.97438 * 21 20 19 42 42 H 1.08004 * 119.98905 * 180.02562 * 22 21 20 43 43 H 1.09000 * 109.47192 * 59.99769 * 25 24 23 44 44 H 1.09002 * 109.46839 * 179.97438 * 25 24 23 45 45 H 1.09002 * 109.47012 * 299.99917 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 7 4.0584 2.8237 0.0013 6 6 4.3031 3.5147 -1.2672 7 6 5.7265 3.2781 -1.7017 8 1 6.3831 2.6731 -1.0941 9 6 6.1902 3.8331 -2.8756 10 7 5.3905 4.5694 -3.6157 11 14 7.9548 3.5404 -3.4139 12 1 8.0192 2.3193 -4.2566 13 1 8.4337 4.7079 -4.1967 14 1 8.8145 3.3612 -2.2163 15 6 4.2827 3.4586 1.1688 16 16 3.9962 2.6512 2.6511 17 7 4.7266 4.7312 1.1694 18 6 4.8444 5.4314 2.3773 19 6 3.8304 5.3646 3.3216 20 6 3.9487 6.0566 4.5121 21 6 5.0757 6.8168 4.7649 22 6 6.0903 6.8881 3.8284 23 6 5.9827 6.1917 2.6356 24 8 6.9826 6.2558 1.7163 25 6 8.1193 7.0554 2.0488 26 1 -0.3632 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9562 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9337 0.9286 -0.8892 34 1 3.9331 0.9287 0.8908 35 1 3.6225 3.1309 -2.0272 36 1 4.1360 4.5839 -1.1364 37 1 5.7168 4.9602 -4.4413 38 1 4.9646 5.1622 0.3336 39 1 2.9485 4.7726 3.1263 40 1 3.1588 6.0035 5.2468 41 1 5.1637 7.3562 5.6963 42 1 6.9694 7.4825 4.0291 43 1 8.5813 6.6701 2.9577 44 1 8.8401 7.0197 1.2319 45 1 7.8036 8.0861 2.2105 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001196239951.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:26 Heat of formation + Delta-G solvation = -16.886055 kcal Electronic energy + Delta-G solvation = -25373.968728 eV Core-core repulsion = 21903.187682 eV Total energy + Delta-G solvation = -3470.781046 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.56826 -40.23444 -38.49312 -36.96032 -35.61303 -34.69169 -31.22498 -31.01645 -30.55394 -29.04859 -28.05113 -26.07247 -25.17928 -23.39139 -23.11317 -22.12422 -21.82280 -19.76071 -19.04350 -18.70450 -18.41009 -17.17380 -16.79342 -16.70709 -16.53525 -16.23318 -15.88196 -15.61597 -15.31880 -14.95190 -14.78275 -14.46214 -14.12494 -13.91223 -13.72958 -13.58882 -13.22549 -13.04379 -12.98689 -12.73987 -12.58127 -12.45331 -12.29525 -12.25147 -12.03882 -11.99334 -11.92789 -11.86474 -11.78445 -11.42372 -10.77010 -10.50338 -9.63961 -8.96760 -8.76090 -8.35164 -8.24632 -6.54173 0.06514 0.53057 0.71186 1.02411 1.34044 1.36711 1.46438 1.73534 2.24163 2.32712 2.46442 2.88170 2.94471 3.92940 3.96191 3.97423 4.03819 4.20588 4.27576 4.33210 4.37025 4.38488 4.51688 4.53196 4.59326 4.64889 4.69933 4.74837 4.82373 4.87438 4.90688 4.99852 5.09483 5.17761 5.26632 5.34598 5.34729 5.43528 5.48646 5.52174 5.61354 5.68982 5.76692 5.88628 6.02330 6.29626 6.51986 6.57050 7.18743 8.68639 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.007708 B = 0.006176 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3631.851736 B = 4532.921509 C = 7636.552553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.113 4.113 3 C -0.116 4.116 4 C 0.112 3.888 5 N -0.537 5.537 6 C 0.239 3.761 7 C -0.555 4.555 8 H 0.050 0.950 9 C 0.032 3.968 10 N -0.911 5.911 11 Si 0.959 3.041 12 H -0.270 1.270 13 H -0.275 1.275 14 H -0.276 1.276 15 C 0.573 3.427 16 S -0.724 6.724 17 N -0.621 5.621 18 C 0.075 3.925 19 C -0.049 4.049 20 C -0.152 4.152 21 C -0.071 4.071 22 C -0.204 4.204 23 C 0.105 3.895 24 O -0.344 6.344 25 C 0.021 3.979 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.044 0.956 36 H 0.025 0.975 37 H 0.273 0.727 38 H 0.413 0.587 39 H 0.125 0.875 40 H 0.150 0.850 41 H 0.164 0.836 42 H 0.159 0.841 43 H 0.068 0.932 44 H 0.105 0.895 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.657 4.373 10.225 11.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.151 4.151 3 C -0.155 4.155 4 C -0.010 4.010 5 N -0.239 5.239 6 C 0.117 3.883 7 C -0.594 4.594 8 H 0.068 0.932 9 C -0.170 4.170 10 N -0.549 5.549 11 Si 0.784 3.216 12 H -0.196 1.196 13 H -0.200 1.200 14 H -0.201 1.201 15 C 0.209 3.791 16 S -0.594 6.594 17 N -0.247 5.247 18 C -0.019 4.019 19 C -0.071 4.071 20 C -0.171 4.171 21 C -0.090 4.090 22 C -0.223 4.223 23 C 0.058 3.942 24 O -0.258 6.258 25 C -0.073 4.073 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.103 0.897 34 H 0.113 0.887 35 H 0.062 0.938 36 H 0.043 0.957 37 H 0.082 0.918 38 H 0.254 0.746 39 H 0.143 0.857 40 H 0.167 0.833 41 H 0.182 0.818 42 H 0.177 0.823 43 H 0.087 0.913 44 H 0.123 0.877 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.852 3.809 10.649 11.461 hybrid contribution 1.351 0.538 -1.867 2.366 sum -0.501 4.347 8.783 9.812 Atomic orbital electron populations 1.21716 0.94647 1.02310 1.01650 1.21373 0.96788 0.94452 1.02487 1.21774 0.93195 0.99046 1.01519 1.21997 0.95574 0.79280 1.04147 1.47575 1.57012 1.15130 1.04227 1.19425 0.97008 0.92191 0.79713 1.21435 0.96603 1.33672 1.07661 0.93218 1.25583 1.01718 0.93931 0.95774 1.69978 1.37431 1.32867 1.14615 0.85524 0.79556 0.78257 0.78219 1.19581 1.20024 1.20129 1.22019 0.81368 0.84339 0.91329 1.92820 1.78863 1.69828 1.17883 1.42221 1.62490 1.09860 1.10093 1.17181 0.95267 1.00436 0.89016 1.21111 0.97044 0.95261 0.93639 1.21171 1.00359 0.98864 0.96752 1.21367 0.91795 0.96594 0.99207 1.21345 1.03205 1.04553 0.93186 1.19129 0.86800 0.97962 0.90337 1.86128 1.28588 1.68369 1.42730 1.23323 0.85723 0.94884 1.03391 0.93080 0.92814 0.91247 0.91253 0.91617 0.92382 0.92679 0.89716 0.88712 0.93827 0.95676 0.91830 0.74604 0.85687 0.83262 0.81830 0.82333 0.91307 0.87706 0.90595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.18 9.91 71.99 0.71 -2.46 16 2 C -0.11 -2.87 5.93 30.60 0.18 -2.69 16 3 C -0.12 -3.70 5.54 30.60 0.17 -3.53 16 4 C 0.11 4.17 5.17 86.38 0.45 4.62 16 5 N -0.54 -22.82 2.46 -714.14 -1.75 -24.57 16 6 C 0.24 11.24 4.88 85.63 0.42 11.66 16 7 C -0.56 -28.58 9.39 25.60 0.24 -28.34 16 8 H 0.05 2.68 7.81 -2.91 -0.02 2.66 16 9 C 0.03 1.65 5.46 84.65 0.46 2.11 16 10 N -0.91 -48.48 13.29 21.45 0.28 -48.19 16 11 Si 0.96 41.34 29.54 68.60 2.03 43.37 16 12 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 13 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 14 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 15 C 0.57 24.87 7.46 179.05 1.34 26.20 16 16 S -0.72 -32.28 24.64 -56.49 -1.39 -33.67 16 17 N -0.62 -25.77 4.92 -189.61 -0.93 -26.70 16 18 C 0.07 2.77 5.85 38.19 0.22 3.00 16 19 C -0.05 -1.64 7.88 22.38 0.18 -1.47 16 20 C -0.15 -3.90 10.04 22.27 0.22 -3.68 16 21 C -0.07 -1.53 10.04 22.28 0.22 -1.31 16 22 C -0.20 -4.94 9.04 22.35 0.20 -4.74 16 23 C 0.11 3.45 6.70 22.60 0.15 3.61 16 24 O -0.34 -11.60 10.21 -93.41 -0.95 -12.56 16 25 C 0.02 0.45 9.81 113.37 1.11 1.57 16 26 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.06 2.02 8.11 -2.39 -0.02 2.00 16 32 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.08 3.08 8.07 -2.39 -0.02 3.06 16 34 H 0.09 3.70 6.58 -2.39 -0.02 3.68 16 35 H 0.04 2.12 8.07 -2.39 -0.02 2.10 16 36 H 0.03 1.24 6.44 -2.39 -0.02 1.22 16 37 H 0.27 13.71 8.31 -92.71 -0.77 12.94 16 38 H 0.41 17.98 6.60 -92.71 -0.61 17.37 16 39 H 0.13 4.63 6.52 -2.91 -0.02 4.61 16 40 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 41 H 0.16 2.15 8.06 -2.92 -0.02 2.13 16 42 H 0.16 2.76 6.30 -2.91 -0.02 2.74 16 43 H 0.07 1.27 7.68 -2.39 -0.02 1.25 16 44 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 45 H 0.08 1.28 7.65 -2.39 -0.02 1.26 16 Total: -1.00 -63.84 380.73 3.93 -59.91 By element: Atomic # 1 Polarization: 37.50 SS G_CDS: 0.37 Total: 37.87 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: 6.28 Total: 4.55 kcal Atomic # 7 Polarization: -97.07 SS G_CDS: -2.40 Total: -99.47 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: -0.95 Total: -12.56 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Atomic # 16 Polarization: -32.28 SS G_CDS: -1.39 Total: -33.67 kcal Total: -63.84 3.93 -59.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196239951.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.022 kcal (2) G-P(sol) polarization free energy of solvation -63.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds