Wall clock time and date at job start Tue Mar 31 2020 14:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47164 * 2 1 4 4 C 1.52992 * 109.47164 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47170 * 180.02562 * 4 3 2 6 6 C 1.37069 * 119.99886 * 269.99850 * 5 4 3 7 7 H 1.08008 * 119.99928 * 145.74963 * 6 5 4 8 8 C 1.38868 * 120.00332 * 325.74897 * 6 5 4 9 9 N 1.31485 * 120.00714 * 155.26172 * 8 6 5 10 10 Si 1.86803 * 119.99854 * 335.26442 * 8 6 5 11 11 H 1.48507 * 109.46980 * 95.35553 * 10 8 6 12 12 H 1.48501 * 109.47013 * 215.35410 * 10 8 6 13 13 H 1.48503 * 109.47166 * 335.35775 * 10 8 6 14 14 C 1.34779 * 120.00118 * 89.99822 * 5 4 3 15 15 S 1.71194 * 119.99884 * 355.65383 * 14 5 4 16 16 N 1.34784 * 119.99872 * 175.65397 * 14 5 4 17 17 C 1.46502 * 119.99716 * 185.25028 * 16 14 5 18 18 C 1.50696 * 109.46865 * 183.97422 * 17 16 14 19 19 C 1.38267 * 119.94101 * 265.06704 * 18 17 16 20 20 C 1.38146 * 120.05260 * 179.72502 * 19 18 17 21 21 C 1.38733 * 119.94567 * 0.56981 * 20 19 18 22 22 O 1.35899 * 120.05713 * 179.68089 * 21 20 19 23 23 C 1.42900 * 116.99949 * 0.02562 * 22 21 20 24 24 C 1.38732 * 119.88677 * 359.70456 * 21 20 19 25 25 C 1.38140 * 119.94389 * 359.97438 * 24 21 20 26 26 H 1.09006 * 109.47645 * 300.00038 * 1 2 3 27 27 H 1.09001 * 109.47745 * 60.00287 * 1 2 3 28 28 H 1.08999 * 109.47341 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47247 * 239.99915 * 2 1 3 30 30 H 1.09002 * 109.47105 * 119.99316 * 2 1 3 31 31 H 1.08997 * 109.47086 * 59.99306 * 3 2 1 32 32 H 1.08997 * 109.47146 * 300.00025 * 3 2 1 33 33 H 1.08997 * 109.47686 * 59.99673 * 4 3 2 34 34 H 1.09002 * 109.47105 * 299.99316 * 4 3 2 35 35 H 0.96988 * 120.00769 * 180.02562 * 9 8 6 36 36 H 0.96997 * 119.99622 * 5.25130 * 16 14 5 37 37 H 1.08991 * 109.46745 * 63.97248 * 17 16 14 38 38 H 1.09002 * 109.46978 * 303.96985 * 17 16 14 39 39 H 1.07995 * 119.97223 * 359.97438 * 19 18 17 40 40 H 1.08007 * 120.02517 * 180.25136 * 20 19 18 41 41 H 1.09002 * 109.47080 * 179.97438 * 23 22 21 42 42 H 1.08997 * 109.47063 * 299.99937 * 23 22 21 43 43 H 1.08998 * 109.47183 * 59.99866 * 23 22 21 44 44 H 1.07996 * 120.02493 * 179.97438 * 24 21 20 45 45 H 1.07998 * 119.97124 * 180.02562 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 7 4.0582 2.8237 0.0000 6 6 4.2862 3.4706 -1.1868 7 1 4.1030 4.5320 -1.2672 8 6 4.7527 2.7613 -2.2858 9 7 4.5228 3.2063 -3.5015 10 14 5.7068 1.1747 -2.0370 11 1 4.7803 0.0186 -2.1399 12 1 6.7582 1.0607 -3.0795 13 1 6.3402 1.1834 -0.6939 14 6 4.2833 3.4584 1.1675 15 16 3.8939 2.6915 2.6476 16 7 4.8150 4.6970 1.1696 17 6 5.1665 5.3410 2.4377 18 6 5.6460 6.7447 2.1721 19 6 6.9991 6.9995 2.0457 20 6 7.4408 8.2845 1.7966 21 6 6.5263 9.3217 1.6851 22 8 6.9588 10.5878 1.4465 23 6 8.3694 10.7786 1.3209 24 6 5.1696 9.0644 1.8180 25 6 4.7325 7.7766 2.0604 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 1.6765 1.9564 0.8899 32 1 1.6766 1.9563 -0.8899 33 1 3.9329 0.9288 -0.8908 34 1 3.9336 0.9287 0.8892 35 1 4.8482 2.7108 -4.2691 36 1 4.9649 5.1618 0.3316 37 1 5.9580 4.7730 2.9264 38 1 4.2896 5.3728 3.0843 39 1 7.7109 6.1925 2.1377 40 1 8.4976 8.4823 1.6938 41 1 8.5783 11.8316 1.1321 42 1 8.8613 10.4700 2.2433 43 1 8.7447 10.1797 0.4911 44 1 4.4557 9.8703 1.7320 45 1 3.6764 7.5758 2.1636 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200358696.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:42 Heat of formation + Delta-G solvation = -2.249779 kcal Electronic energy + Delta-G solvation = -24628.086353 eV Core-core repulsion = 21157.939984 eV Total energy + Delta-G solvation = -3470.146369 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.23184 -38.76214 -37.76377 -35.52482 -34.04696 -32.66165 -31.19693 -30.71007 -28.63235 -27.70162 -26.30135 -24.99279 -23.20371 -22.67701 -21.46968 -21.06003 -20.70385 -18.27411 -17.91245 -17.02073 -16.43407 -16.26542 -15.88346 -15.30032 -14.98085 -14.80261 -14.48799 -14.20067 -13.94714 -13.72778 -13.55325 -13.25715 -13.10894 -12.93157 -12.68338 -12.51724 -12.17669 -12.09642 -11.81040 -11.50361 -11.38026 -11.14230 -10.95564 -10.82409 -10.66769 -10.61841 -10.46423 -10.11573 -10.05950 -9.84018 -9.24934 -9.02705 -8.24349 -8.08529 -6.99035 -6.91620 -6.46193 -4.51594 1.29638 1.33689 2.54571 2.89514 3.02355 3.09055 3.12556 3.20476 3.58654 3.76142 3.97179 4.47376 4.69367 4.74068 4.81507 4.92556 4.93343 4.94321 5.23593 5.34170 5.37680 5.40909 5.42957 5.56050 5.59534 5.75926 5.84154 6.05870 6.12351 6.13597 6.15347 6.22827 6.26138 6.27850 6.29831 6.41331 6.53320 6.69366 6.70828 6.78584 6.84035 6.99338 7.27304 7.34388 7.50714 7.92576 8.11958 8.63584 8.94013 10.08123 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014526 B = 0.003377 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.120561 B = 8289.505330 C = 9259.968139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.120 4.120 3 C -0.122 4.122 4 C 0.097 3.903 5 N -0.387 5.387 6 C -0.368 4.368 7 H 0.110 0.890 8 C 0.083 3.917 9 N -0.824 5.824 10 Si 0.880 3.120 11 H -0.264 1.264 12 H -0.281 1.281 13 H -0.254 1.254 14 C 0.514 3.486 15 S -0.775 6.775 16 N -0.690 5.690 17 C 0.181 3.819 18 C -0.137 4.137 19 C -0.059 4.059 20 C -0.211 4.211 21 C 0.127 3.873 22 O -0.320 6.320 23 C 0.027 3.973 24 C -0.154 4.154 25 C -0.058 4.058 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.048 0.952 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.100 0.900 35 H 0.285 0.715 36 H 0.401 0.599 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.098 0.902 42 H 0.055 0.945 43 H 0.056 0.944 44 H 0.130 0.870 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.314 8.200 4.142 10.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.158 4.158 3 C -0.161 4.161 4 C -0.026 4.026 5 N -0.076 5.076 6 C -0.498 4.498 7 H 0.127 0.873 8 C -0.132 4.132 9 N -0.453 5.453 10 Si 0.706 3.294 11 H -0.191 1.191 12 H -0.208 1.208 13 H -0.178 1.178 14 C 0.151 3.849 15 S -0.649 6.649 16 N -0.326 5.326 17 C 0.057 3.943 18 C -0.138 4.138 19 C -0.077 4.077 20 C -0.230 4.230 21 C 0.082 3.918 22 O -0.233 6.233 23 C -0.068 4.068 24 C -0.173 4.173 25 C -0.077 4.077 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.118 0.882 35 H 0.095 0.905 36 H 0.240 0.760 37 H 0.093 0.907 38 H 0.105 0.895 39 H 0.145 0.855 40 H 0.145 0.855 41 H 0.116 0.884 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.148 0.852 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.987 7.852 4.772 10.017 hybrid contribution 1.067 -0.112 -1.446 1.800 sum 5.054 7.740 3.327 9.825 Atomic orbital electron populations 1.21723 0.96099 1.00863 1.01763 1.21424 0.95644 0.97115 1.01629 1.21761 0.94565 0.96644 1.03103 1.22116 0.95442 0.82287 1.02792 1.42877 1.49568 1.11989 1.03210 1.19197 1.48007 0.96635 0.85989 0.87256 1.25326 0.94772 0.98815 0.94288 1.69806 1.37232 1.39924 0.98363 0.86873 0.80316 0.82310 0.79877 1.19079 1.20793 1.17805 1.21304 0.87353 0.86342 0.89862 1.92698 1.79895 1.73284 1.19013 1.44469 1.63959 1.14733 1.09458 1.20162 1.01359 0.87138 0.85629 1.19989 0.93456 0.95741 1.04574 1.20938 0.95308 0.95957 0.95534 1.21202 0.99315 0.93392 1.09057 1.19066 0.93544 0.83366 0.95832 1.86057 1.25012 1.25698 1.86536 1.23043 0.79382 1.03066 1.01280 1.20412 0.92715 0.97667 1.06487 1.20963 0.99917 0.91144 0.95640 0.92694 0.92977 0.93282 0.92626 0.91778 0.90428 0.91785 0.91596 0.88199 0.90481 0.76012 0.90666 0.89468 0.85459 0.85518 0.88374 0.92672 0.92575 0.85197 0.84987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.91 37.15 0.37 -1.68 16 2 C -0.12 -1.94 5.93 -26.73 -0.16 -2.10 16 3 C -0.12 -2.37 5.52 -26.73 -0.15 -2.51 16 4 C 0.10 2.08 3.95 -4.05 -0.02 2.07 16 5 N -0.39 -8.85 2.23 -116.74 -0.26 -9.11 16 6 C -0.37 -8.80 9.03 -14.98 -0.14 -8.94 16 7 H 0.11 2.73 7.04 -52.48 -0.37 2.36 16 8 C 0.08 1.99 5.28 -17.47 -0.09 1.89 16 9 N -0.82 -20.57 13.96 55.49 0.77 -19.80 16 10 Si 0.88 18.99 25.07 -169.99 -4.26 14.73 16 11 H -0.26 -5.46 6.63 56.52 0.37 -5.09 16 12 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 13 H -0.25 -5.72 7.11 56.52 0.40 -5.32 16 14 C 0.51 11.56 7.64 -86.91 -0.66 10.90 16 15 S -0.78 -18.79 26.81 -107.50 -2.88 -21.67 16 16 N -0.69 -13.35 5.43 -63.22 -0.34 -13.69 16 17 C 0.18 2.99 5.34 -5.19 -0.03 2.96 16 18 C -0.14 -1.92 5.25 -104.60 -0.55 -2.47 16 19 C -0.06 -0.76 9.67 -39.60 -0.38 -1.14 16 20 C -0.21 -2.51 9.04 -39.43 -0.36 -2.87 16 21 C 0.13 1.60 6.69 -39.22 -0.26 1.34 16 22 O -0.32 -3.72 10.50 -19.42 -0.20 -3.92 16 23 C 0.03 0.21 9.81 101.05 0.99 1.20 16 24 C -0.15 -1.95 9.99 -39.43 -0.39 -2.34 16 25 C -0.06 -0.77 9.71 -39.61 -0.38 -1.15 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.08 1.61 7.80 -51.93 -0.40 1.21 16 32 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.07 1.43 3.02 -51.93 -0.16 1.27 16 34 H 0.10 2.22 6.70 -51.93 -0.35 1.87 16 35 H 0.28 6.59 8.31 -40.82 -0.34 6.25 16 36 H 0.40 7.71 6.53 -40.82 -0.27 7.45 16 37 H 0.08 1.28 8.05 -51.93 -0.42 0.86 16 38 H 0.09 1.52 7.69 -51.93 -0.40 1.12 16 39 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 40 H 0.13 1.21 6.30 -52.48 -0.33 0.88 16 41 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.05 0.36 7.66 -51.93 -0.40 -0.03 16 43 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 44 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 45 H 0.13 1.63 8.06 -52.49 -0.42 1.20 16 LS Contribution 375.53 15.07 5.66 5.66 Total: -1.00 -28.67 375.53 -10.61 -39.27 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: -6.88 Total: 13.36 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: -2.21 Total: -4.84 kcal Atomic # 7 Polarization: -42.77 SS G_CDS: 0.17 Total: -42.60 kcal Atomic # 8 Polarization: -3.72 SS G_CDS: -0.20 Total: -3.92 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -4.26 Total: 14.73 kcal Atomic # 16 Polarization: -18.79 SS G_CDS: -2.88 Total: -21.67 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -28.67 -10.61 -39.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200358696.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.024 kcal (2) G-P(sol) polarization free energy of solvation -28.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds