Wall clock time and date at job start Tue Mar 31 2020 14:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47164 * 2 1 4 4 C 1.52992 * 109.47164 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47170 * 180.02562 * 4 3 2 6 6 C 1.37069 * 119.99886 * 269.99850 * 5 4 3 7 7 H 1.08008 * 119.99928 * 145.74963 * 6 5 4 8 8 C 1.38868 * 120.00332 * 325.74897 * 6 5 4 9 9 N 1.31485 * 120.00714 * 155.26172 * 8 6 5 10 10 Si 1.86803 * 119.99854 * 335.26442 * 8 6 5 11 11 H 1.48507 * 109.46980 * 95.35553 * 10 8 6 12 12 H 1.48501 * 109.47013 * 215.35410 * 10 8 6 13 13 H 1.48503 * 109.47166 * 335.35775 * 10 8 6 14 14 C 1.34779 * 120.00118 * 89.99822 * 5 4 3 15 15 S 1.71194 * 119.99884 * 355.65383 * 14 5 4 16 16 N 1.34784 * 119.99872 * 175.65397 * 14 5 4 17 17 C 1.46502 * 119.99716 * 185.25028 * 16 14 5 18 18 C 1.50696 * 109.46865 * 183.97422 * 17 16 14 19 19 C 1.38267 * 119.94101 * 265.06704 * 18 17 16 20 20 C 1.38146 * 120.05260 * 179.72502 * 19 18 17 21 21 C 1.38733 * 119.94567 * 0.56981 * 20 19 18 22 22 O 1.35899 * 120.05713 * 179.68089 * 21 20 19 23 23 C 1.42900 * 116.99949 * 0.02562 * 22 21 20 24 24 C 1.38732 * 119.88677 * 359.70456 * 21 20 19 25 25 C 1.38140 * 119.94389 * 359.97438 * 24 21 20 26 26 H 1.09006 * 109.47645 * 300.00038 * 1 2 3 27 27 H 1.09001 * 109.47745 * 60.00287 * 1 2 3 28 28 H 1.08999 * 109.47341 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47247 * 239.99915 * 2 1 3 30 30 H 1.09002 * 109.47105 * 119.99316 * 2 1 3 31 31 H 1.08997 * 109.47086 * 59.99306 * 3 2 1 32 32 H 1.08997 * 109.47146 * 300.00025 * 3 2 1 33 33 H 1.08997 * 109.47686 * 59.99673 * 4 3 2 34 34 H 1.09002 * 109.47105 * 299.99316 * 4 3 2 35 35 H 0.96988 * 120.00769 * 180.02562 * 9 8 6 36 36 H 0.96997 * 119.99622 * 5.25130 * 16 14 5 37 37 H 1.08991 * 109.46745 * 63.97248 * 17 16 14 38 38 H 1.09002 * 109.46978 * 303.96985 * 17 16 14 39 39 H 1.07995 * 119.97223 * 359.97438 * 19 18 17 40 40 H 1.08007 * 120.02517 * 180.25136 * 20 19 18 41 41 H 1.09002 * 109.47080 * 179.97438 * 23 22 21 42 42 H 1.08997 * 109.47063 * 299.99937 * 23 22 21 43 43 H 1.08998 * 109.47183 * 59.99866 * 23 22 21 44 44 H 1.07996 * 120.02493 * 179.97438 * 24 21 20 45 45 H 1.07998 * 119.97124 * 180.02562 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 7 4.0582 2.8237 0.0000 6 6 4.2862 3.4706 -1.1868 7 1 4.1030 4.5320 -1.2672 8 6 4.7527 2.7613 -2.2858 9 7 4.5228 3.2063 -3.5015 10 14 5.7068 1.1747 -2.0370 11 1 4.7803 0.0186 -2.1399 12 1 6.7582 1.0607 -3.0795 13 1 6.3402 1.1834 -0.6939 14 6 4.2833 3.4584 1.1675 15 16 3.8939 2.6915 2.6476 16 7 4.8150 4.6970 1.1696 17 6 5.1665 5.3410 2.4377 18 6 5.6460 6.7447 2.1721 19 6 6.9991 6.9995 2.0457 20 6 7.4408 8.2845 1.7966 21 6 6.5263 9.3217 1.6851 22 8 6.9588 10.5878 1.4465 23 6 8.3694 10.7786 1.3209 24 6 5.1696 9.0644 1.8180 25 6 4.7325 7.7766 2.0604 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 1.6765 1.9564 0.8899 32 1 1.6766 1.9563 -0.8899 33 1 3.9329 0.9288 -0.8908 34 1 3.9336 0.9287 0.8892 35 1 4.8482 2.7108 -4.2691 36 1 4.9649 5.1618 0.3316 37 1 5.9580 4.7730 2.9264 38 1 4.2896 5.3728 3.0843 39 1 7.7109 6.1925 2.1377 40 1 8.4976 8.4823 1.6938 41 1 8.5783 11.8316 1.1321 42 1 8.8613 10.4700 2.2433 43 1 8.7447 10.1797 0.4911 44 1 4.4557 9.8703 1.7320 45 1 3.6764 7.5758 2.1636 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200358696.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:41 Heat of formation + Delta-G solvation = -15.935619 kcal Electronic energy + Delta-G solvation = -24628.679816 eV Core-core repulsion = 21157.939984 eV Total energy + Delta-G solvation = -3470.739832 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.19934 -40.42131 -38.85022 -36.97834 -35.54039 -34.42057 -32.21583 -31.86865 -30.04715 -28.62284 -27.89767 -26.30854 -24.65640 -23.65578 -23.21455 -22.20369 -22.10862 -19.68268 -19.16598 -18.70619 -18.09610 -17.27323 -16.92963 -16.65219 -16.42743 -16.11837 -15.89286 -15.54026 -15.19000 -14.98485 -14.83184 -14.74704 -14.54688 -14.21009 -14.10426 -13.59019 -13.55212 -13.34906 -13.08437 -12.85621 -12.57230 -12.49224 -12.26807 -12.08493 -12.01150 -11.98334 -11.83786 -11.78173 -11.65094 -11.47668 -11.00654 -10.01741 -9.80762 -9.22933 -8.85239 -8.81430 -8.39399 -6.41308 0.25323 0.34461 0.75966 1.15896 1.29536 1.34206 1.38595 1.96925 2.10726 2.34109 2.58475 2.75507 3.10002 3.72691 3.78920 3.90841 3.91933 4.01363 4.20404 4.22863 4.30866 4.37208 4.39409 4.41414 4.54314 4.57998 4.70494 4.72855 4.75241 4.81189 4.90765 4.94485 4.99567 5.04527 5.13944 5.20436 5.29179 5.30460 5.36972 5.47236 5.58078 5.61792 5.69166 5.74025 6.14677 6.39820 6.41185 6.79484 7.11638 8.25856 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014526 B = 0.003377 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.120561 B = 8289.505330 C = 9259.968139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.117 4.117 3 C -0.111 4.111 4 C 0.095 3.905 5 N -0.394 5.394 6 C -0.372 4.372 7 H 0.093 0.907 8 C 0.057 3.943 9 N -0.853 5.853 10 Si 0.923 3.077 11 H -0.247 1.247 12 H -0.273 1.273 13 H -0.270 1.270 14 C 0.515 3.485 15 S -0.806 6.806 16 N -0.679 5.679 17 C 0.189 3.811 18 C -0.150 4.150 19 C -0.063 4.063 20 C -0.209 4.209 21 C 0.125 3.875 22 O -0.333 6.333 23 C 0.017 3.983 24 C -0.163 4.163 25 C -0.063 4.063 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.068 0.932 34 H 0.092 0.908 35 H 0.292 0.708 36 H 0.403 0.597 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.136 0.864 40 H 0.153 0.847 41 H 0.120 0.880 42 H 0.067 0.933 43 H 0.061 0.939 44 H 0.143 0.857 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.149 8.291 3.914 10.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.155 4.155 3 C -0.150 4.150 4 C -0.028 4.028 5 N -0.084 5.084 6 C -0.502 4.502 7 H 0.110 0.890 8 C -0.155 4.155 9 N -0.484 5.484 10 Si 0.747 3.253 11 H -0.173 1.173 12 H -0.199 1.199 13 H -0.194 1.194 14 C 0.150 3.850 15 S -0.680 6.680 16 N -0.313 5.313 17 C 0.066 3.934 18 C -0.151 4.151 19 C -0.081 4.081 20 C -0.228 4.228 21 C 0.079 3.921 22 O -0.247 6.247 23 C -0.077 4.077 24 C -0.182 4.182 25 C -0.081 4.081 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.110 0.890 35 H 0.103 0.897 36 H 0.242 0.758 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.154 0.846 40 H 0.170 0.830 41 H 0.139 0.861 42 H 0.086 0.914 43 H 0.080 0.920 44 H 0.160 0.840 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 4.830 7.969 4.542 10.366 hybrid contribution 0.863 0.025 -1.345 1.598 sum 5.694 7.994 3.197 10.322 Atomic orbital electron populations 1.21696 0.94258 1.02422 1.01696 1.21429 0.97267 0.94656 1.02166 1.21667 0.93119 0.98731 1.01513 1.22201 0.96710 0.81531 1.02319 1.42948 1.50099 1.12526 1.02860 1.19071 1.48501 0.96158 0.86510 0.88975 1.25757 0.94937 1.00918 0.93905 1.69831 1.38205 1.41335 0.99029 0.86200 0.79688 0.80398 0.78986 1.17258 1.19880 1.19424 1.21299 0.87342 0.87139 0.89201 1.92696 1.81004 1.74198 1.20137 1.44671 1.62290 1.13683 1.10668 1.20141 1.00682 0.88502 0.84115 1.19785 0.94314 0.94312 1.06720 1.21084 0.94887 0.96894 0.95262 1.21442 1.00622 0.92603 1.08107 1.19239 0.93666 0.84090 0.95057 1.86050 1.27421 1.24985 1.86200 1.23366 0.77390 1.04798 1.02184 1.20593 0.93467 0.97672 1.06420 1.21018 1.00018 0.91384 0.95691 0.92961 0.92897 0.90905 0.91842 0.91440 0.92165 0.93020 0.91464 0.88989 0.89749 0.75819 0.91069 0.90542 0.84571 0.82984 0.86144 0.91436 0.91991 0.83967 0.84760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.74 9.91 71.98 0.71 -3.02 16 2 C -0.12 -3.62 5.93 30.59 0.18 -3.44 16 3 C -0.11 -4.31 5.52 30.59 0.17 -4.14 16 4 C 0.10 4.08 3.95 86.38 0.34 4.42 16 5 N -0.39 -18.15 2.23 -523.26 -1.16 -19.32 16 6 C -0.37 -17.96 9.03 84.03 0.76 -17.20 16 7 H 0.09 4.70 7.04 -2.91 -0.02 4.68 16 8 C 0.06 2.74 5.28 84.90 0.45 3.18 16 9 N -0.85 -42.38 13.96 21.65 0.30 -42.08 16 10 Si 0.92 38.23 25.07 68.60 1.72 39.95 16 11 H -0.25 -9.52 6.63 99.48 0.66 -8.86 16 12 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 13 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 14 C 0.51 23.40 7.64 179.05 1.37 24.77 16 15 S -0.81 -39.40 26.81 -56.49 -1.51 -40.91 16 16 N -0.68 -26.57 5.43 -353.92 -1.92 -28.50 16 17 C 0.19 6.30 5.34 85.63 0.46 6.76 16 18 C -0.15 -4.19 5.25 -19.85 -0.10 -4.30 16 19 C -0.06 -1.55 9.67 22.25 0.22 -1.34 16 20 C -0.21 -4.59 9.04 22.37 0.20 -4.39 16 21 C 0.13 2.96 6.69 22.51 0.15 3.11 16 22 O -0.33 -7.09 10.50 -92.42 -0.97 -8.06 16 23 C 0.02 0.21 9.81 113.37 1.11 1.32 16 24 C -0.16 -3.98 9.99 22.36 0.22 -3.76 16 25 C -0.06 -1.64 9.71 22.25 0.22 -1.42 16 26 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 27 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.06 2.53 7.80 -2.39 -0.02 2.51 16 32 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.07 2.84 3.02 -2.39 -0.01 2.84 16 34 H 0.09 4.09 6.70 -2.39 -0.02 4.07 16 35 H 0.29 13.32 8.31 -92.72 -0.77 12.55 16 36 H 0.40 15.71 6.53 -92.71 -0.61 15.11 16 37 H 0.07 2.44 8.05 -2.39 -0.02 2.42 16 38 H 0.08 2.73 7.69 -2.39 -0.02 2.71 16 39 H 0.14 3.07 8.06 -2.91 -0.02 3.04 16 40 H 0.15 2.47 6.30 -2.91 -0.02 2.46 16 41 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.07 0.70 7.66 -2.39 -0.02 0.68 16 43 H 0.06 0.72 7.66 -2.39 -0.02 0.71 16 44 H 0.14 3.02 8.06 -2.91 -0.02 3.00 16 45 H 0.13 3.35 8.06 -2.91 -0.02 3.33 16 Total: -1.00 -60.51 375.53 3.24 -57.28 By element: Atomic # 1 Polarization: 40.75 SS G_CDS: 0.34 Total: 41.08 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: 6.45 Total: 0.56 kcal Atomic # 7 Polarization: -87.11 SS G_CDS: -2.79 Total: -89.89 kcal Atomic # 8 Polarization: -7.09 SS G_CDS: -0.97 Total: -8.06 kcal Atomic # 14 Polarization: 38.23 SS G_CDS: 1.72 Total: 39.95 kcal Atomic # 16 Polarization: -39.40 SS G_CDS: -1.51 Total: -40.91 kcal Total: -60.51 3.24 -57.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200358696.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.339 kcal (2) G-P(sol) polarization free energy of solvation -60.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds