Wall clock time and date at job start Tue Mar 31 2020 14:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47336 * 262.23148 * 3 2 1 5 5 N 1.46894 * 109.47295 * 180.02562 * 4 3 2 6 6 C 1.46905 * 111.00063 * 179.97438 * 5 4 3 7 7 H 1.08998 * 112.88077 * 23.65622 * 6 5 4 8 8 C 1.53944 * 113.66288 * 252.19268 * 6 5 4 9 9 C 1.53959 * 87.29408 * 220.79363 * 8 6 5 10 10 H 1.08996 * 113.75031 * 139.21656 * 9 8 6 11 11 N 1.46500 * 113.65706 * 270.25801 * 9 8 6 12 12 C 1.34772 * 120.00383 * 252.18315 * 11 9 8 13 13 O 1.21281 * 119.99720 * 0.02562 * 12 11 9 14 14 C 1.50694 * 120.00401 * 180.02562 * 12 11 9 15 15 S 1.81005 * 109.47415 * 179.97438 * 14 12 11 16 16 C 1.76198 * 99.99931 * 179.97438 * 15 14 12 17 17 H 1.07999 * 120.00293 * 359.97438 * 16 15 14 18 18 C 1.38805 * 119.99843 * 180.02562 * 16 15 14 19 19 N 1.31634 * 119.99846 * 359.71985 * 18 16 15 20 20 Si 1.86795 * 120.00110 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47163 * 59.99666 * 20 18 16 22 22 H 1.48505 * 109.47234 * 179.97438 * 20 18 16 23 23 H 1.48492 * 109.47124 * 299.99689 * 20 18 16 24 24 C 1.52903 * 113.66492 * 154.99836 * 6 5 4 25 25 C 1.52905 * 121.13765 * 265.09632 * 24 6 5 26 26 C 1.53954 * 86.78527 * 100.81808 * 25 24 6 27 27 C 1.52911 * 121.13299 * 13.65612 * 24 6 5 28 28 H 4.44656 * 5.63280 * 179.97438 * 4 1 2 29 29 H 1.09001 * 109.47168 * 142.22677 * 3 2 1 30 30 H 1.09001 * 109.47516 * 22.22945 * 3 2 1 31 31 H 1.09001 * 109.46854 * 59.99711 * 4 3 2 32 32 H 1.09001 * 109.46653 * 300.00326 * 4 3 2 33 33 H 1.00905 * 110.99995 * 56.04878 * 5 4 3 34 34 H 1.08997 * 113.58615 * 106.18841 * 8 6 5 35 35 H 1.09002 * 113.58018 * 335.38903 * 8 6 5 36 36 H 0.97003 * 119.99680 * 72.18942 * 11 9 8 37 37 H 1.09002 * 109.47362 * 59.99907 * 14 12 11 38 38 H 1.09005 * 109.46865 * 300.00021 * 14 12 11 39 39 H 0.97000 * 120.00210 * 180.02562 * 19 18 16 40 40 H 1.09004 * 113.66001 * 215.28795 * 25 24 6 41 41 H 1.08999 * 113.66685 * 346.34231 * 25 24 6 42 42 H 1.08996 * 113.57721 * 270.13207 * 26 25 24 43 43 H 1.08995 * 113.65370 * 139.34269 * 26 25 24 44 44 H 1.08998 * 113.66402 * 13.64984 * 27 24 6 45 45 H 1.09000 * 113.66302 * 144.70382 * 27 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1560 0.1959 1.4293 5 7 4.6249 0.1971 1.4292 6 6 5.1513 0.3834 2.7880 7 1 4.4448 0.0818 3.5612 8 6 5.7741 1.7712 3.0245 9 6 6.8871 1.0568 3.8126 10 1 7.8838 1.4556 3.6241 11 7 6.5938 0.9077 5.2401 12 6 7.2573 1.6531 6.1459 13 8 8.0970 2.4476 5.7792 14 6 6.9560 1.4993 7.6144 15 16 8.0031 2.6275 8.5667 16 6 7.4565 2.2485 10.1983 17 1 6.6881 1.5052 10.3514 18 6 8.0128 2.9061 11.2868 19 7 8.9525 3.8088 11.1005 20 14 7.4339 2.5038 13.0167 21 1 7.6818 1.0673 13.3001 22 1 8.1793 3.3367 13.9944 23 1 5.9807 2.7871 13.1307 24 6 6.5567 -0.1858 2.9851 25 6 6.7686 -1.5910 3.5495 26 6 7.0089 -2.0439 2.0978 27 6 7.4197 -0.5925 1.7901 28 1 -1.0500 0.0002 -0.0001 29 1 3.0090 0.8131 -0.6295 30 1 3.0098 -0.9504 -0.3888 31 1 2.7929 -0.6166 2.0587 32 1 2.7921 1.1470 1.8180 33 1 4.9859 0.9007 0.8023 34 1 5.1572 2.4272 3.6386 35 1 6.1261 2.2524 2.1119 36 1 5.9220 0.2724 5.5334 37 1 7.1562 0.4726 7.9209 38 1 5.9074 1.7350 7.7967 39 1 9.3415 4.2681 11.8612 40 1 7.6489 -1.6785 4.1863 41 1 5.8740 -2.0213 3.9996 42 1 6.1009 -2.3584 1.5833 43 1 7.8242 -2.7595 1.9922 44 1 7.0452 -0.2250 0.8347 45 1 8.4830 -0.3992 1.9324 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202512011.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:57 Heat of formation + Delta-G solvation = 54.995578 kcal Electronic energy + Delta-G solvation = -24060.140299 eV Core-core repulsion = 20592.476275 eV Total energy + Delta-G solvation = -3467.664024 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.19224 -38.68551 -36.74293 -35.25250 -33.82913 -32.43142 -32.18278 -29.63662 -28.58661 -25.94501 -25.50135 -24.78604 -24.11961 -22.67038 -21.30913 -20.17685 -18.79212 -18.15689 -17.74329 -16.52347 -16.24784 -16.09344 -15.69534 -15.55972 -14.89558 -14.85950 -14.80518 -14.20664 -13.80070 -13.58377 -13.34260 -13.20035 -13.01955 -12.65288 -12.51875 -12.42810 -12.27160 -12.09924 -11.88423 -11.69976 -11.11026 -11.04916 -11.03847 -10.78544 -10.72514 -10.51816 -10.46680 -10.27207 -10.07838 -9.81468 -9.39848 -9.06348 -8.85260 -8.66645 -8.24361 -6.50243 -6.21708 -3.92352 2.40620 2.47149 2.99895 3.06853 3.23268 3.27005 3.30109 3.60321 3.69055 4.17635 4.19212 4.20462 4.35194 4.51948 4.61997 4.67914 4.73113 4.76272 4.86469 5.07960 5.12095 5.13271 5.16848 5.36178 5.41776 5.48352 5.56018 5.58521 5.62775 5.64794 5.68231 5.71356 5.77057 5.83988 5.87916 5.90166 6.00121 6.13428 6.25004 6.36173 6.60619 6.75349 6.98070 7.24538 7.59031 7.72527 8.34797 8.61993 9.23386 10.85615 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017062 B = 0.002299 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.719828 B =12176.911241 C =13005.623851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.187 4.187 3 C -0.011 4.011 4 C 0.064 3.936 5 N -0.674 5.674 6 C 0.094 3.906 7 H 0.098 0.902 8 C -0.179 4.179 9 C 0.139 3.861 10 H 0.104 0.896 11 N -0.718 5.718 12 C 0.534 3.466 13 O -0.516 6.516 14 C -0.153 4.153 15 S -0.059 6.059 16 C -0.536 4.536 17 H 0.072 0.928 18 C 0.073 3.927 19 N -0.868 5.868 20 Si 0.919 3.081 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 C -0.101 4.101 25 C -0.125 4.125 26 C -0.130 4.130 27 C -0.102 4.102 28 H 0.217 0.783 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.076 0.924 32 H 0.035 0.965 33 H 0.344 0.656 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.397 0.603 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.269 0.731 40 H 0.083 0.917 41 H 0.064 0.936 42 H 0.084 0.916 43 H 0.060 0.940 44 H 0.075 0.925 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.925 -11.034 -22.903 28.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.187 4.187 3 C -0.048 4.048 4 C -0.065 4.065 5 N -0.303 5.303 6 C -0.017 4.017 7 H 0.116 0.884 8 C -0.219 4.219 9 C 0.032 3.968 10 H 0.122 0.878 11 N -0.370 5.370 12 C 0.321 3.679 13 O -0.390 6.390 14 C -0.304 4.304 15 S 0.167 5.833 16 C -0.684 4.684 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.200 1.200 24 C -0.103 4.103 25 C -0.163 4.163 26 C -0.168 4.168 27 C -0.140 4.140 28 H 0.233 0.767 29 H 0.103 0.897 30 H 0.113 0.887 31 H 0.094 0.906 32 H 0.053 0.947 33 H 0.163 0.837 34 H 0.091 0.909 35 H 0.108 0.892 36 H 0.231 0.769 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.079 0.921 40 H 0.101 0.899 41 H 0.083 0.917 42 H 0.103 0.897 43 H 0.079 0.921 44 H 0.093 0.907 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.331 -10.253 -23.398 27.556 hybrid contribution -2.172 -0.471 1.878 2.909 sum -12.503 -10.724 -21.520 27.100 Atomic orbital electron populations 1.24946 0.96030 1.01292 1.00343 1.23044 0.94507 1.00360 1.00801 1.18662 0.84458 1.03917 0.97769 1.21898 0.87939 1.00907 0.95805 1.60352 1.06500 1.54639 1.08852 1.22758 0.94170 0.94518 0.90218 0.88420 1.24128 0.99331 0.97185 1.01280 1.21494 0.99324 0.95725 0.80238 0.87844 1.45619 1.42874 1.43431 1.05120 1.20320 0.80363 0.79680 0.87555 1.90698 1.32204 1.35148 1.80957 1.23532 1.06060 1.06565 0.94243 1.85396 1.49235 1.48880 0.99754 1.22826 1.26518 1.27426 0.91664 0.90993 1.24996 0.94676 0.94548 0.99386 1.70009 1.24675 1.23863 1.31729 0.86223 0.78800 0.78508 0.81960 1.19932 1.20809 1.19957 1.23052 0.95889 0.93740 0.97606 1.22664 1.01835 0.94926 0.96837 1.22730 1.01404 0.96165 0.96466 1.22420 0.98463 0.96174 0.96933 0.76660 0.89703 0.88663 0.90587 0.94682 0.83690 0.90874 0.89184 0.76898 0.89204 0.89298 0.92127 0.89878 0.91692 0.89726 0.92125 0.90680 0.90236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.52 19.25 29.55 0.57 -0.95 16 2 C -0.19 -1.48 13.34 -37.12 -0.50 -1.98 16 3 C -0.01 -0.07 5.96 -29.52 -0.18 -0.24 16 4 C 0.06 0.42 5.48 -3.83 -0.02 0.40 16 5 N -0.67 -4.39 5.73 -106.26 -0.61 -5.00 16 6 C 0.09 0.74 3.98 -67.27 -0.27 0.48 16 7 H 0.10 0.80 7.87 -51.93 -0.41 0.40 16 8 C -0.18 -1.71 7.50 -25.75 -0.19 -1.90 16 9 C 0.14 1.61 4.13 -67.48 -0.28 1.33 16 10 H 0.10 1.44 7.46 -51.93 -0.39 1.05 16 11 N -0.72 -9.43 5.05 -53.37 -0.27 -9.70 16 12 C 0.53 9.86 7.85 -10.99 -0.09 9.78 16 13 O -0.52 -11.65 15.46 5.56 0.09 -11.57 16 14 C -0.15 -3.07 6.16 36.00 0.22 -2.85 16 15 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 16 C -0.54 -15.27 9.50 30.94 0.29 -14.98 16 17 H 0.07 1.93 7.80 -52.49 -0.41 1.53 16 18 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 19 N -0.87 -26.19 13.22 55.49 0.73 -25.45 16 20 Si 0.92 21.42 29.55 -169.99 -5.02 16.39 16 21 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 23 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 24 C -0.10 -0.88 0.92 -154.72 -0.14 -1.03 16 25 C -0.13 -1.10 7.49 -26.28 -0.20 -1.30 16 26 C -0.13 -1.03 8.08 -25.75 -0.21 -1.24 16 27 C -0.10 -0.83 7.53 -26.28 -0.20 -1.02 16 28 H 0.22 0.89 7.80 -54.09 -0.42 0.47 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.55 8.13 -51.93 -0.42 0.13 16 32 H 0.03 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.34 1.98 8.09 -39.29 -0.32 1.66 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.09 0.77 7.82 -51.93 -0.41 0.36 16 36 H 0.40 4.22 8.62 -40.82 -0.35 3.87 16 37 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 38 H 0.09 1.65 8.14 -51.91 -0.42 1.22 16 39 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 40 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.07 0.55 7.49 -51.93 -0.39 0.16 16 45 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 392.52 15.07 5.92 5.92 Total: -1.00 -33.80 392.52 -9.95 -43.75 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -7.30 Total: 2.99 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: -1.27 Total: -13.51 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: -0.14 Total: -40.15 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.09 Total: -11.57 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.80 -9.95 -43.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202512011.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.747 kcal (2) G-P(sol) polarization free energy of solvation -33.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds