Wall clock time and date at job start Tue Mar 31 2020 14:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47336 * 262.23148 * 3 2 1 5 5 N 1.46894 * 109.47295 * 180.02562 * 4 3 2 6 6 C 1.46905 * 111.00063 * 179.97438 * 5 4 3 7 7 H 1.08998 * 112.88077 * 23.65622 * 6 5 4 8 8 C 1.53944 * 113.66288 * 252.19268 * 6 5 4 9 9 C 1.53959 * 87.29408 * 220.79363 * 8 6 5 10 10 H 1.08996 * 113.75031 * 139.21656 * 9 8 6 11 11 N 1.46500 * 113.65706 * 270.25801 * 9 8 6 12 12 C 1.34772 * 120.00383 * 252.18315 * 11 9 8 13 13 O 1.21281 * 119.99720 * 0.02562 * 12 11 9 14 14 C 1.50694 * 120.00401 * 180.02562 * 12 11 9 15 15 S 1.81005 * 109.47415 * 179.97438 * 14 12 11 16 16 C 1.76198 * 99.99931 * 179.97438 * 15 14 12 17 17 H 1.07999 * 120.00293 * 359.97438 * 16 15 14 18 18 C 1.38805 * 119.99843 * 180.02562 * 16 15 14 19 19 N 1.31634 * 119.99846 * 359.71985 * 18 16 15 20 20 Si 1.86795 * 120.00110 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47163 * 59.99666 * 20 18 16 22 22 H 1.48505 * 109.47234 * 179.97438 * 20 18 16 23 23 H 1.48492 * 109.47124 * 299.99689 * 20 18 16 24 24 C 1.52903 * 113.66492 * 154.99836 * 6 5 4 25 25 C 1.52905 * 121.13765 * 265.09632 * 24 6 5 26 26 C 1.53954 * 86.78527 * 100.81808 * 25 24 6 27 27 C 1.52911 * 121.13299 * 13.65612 * 24 6 5 28 28 H 4.44656 * 5.63280 * 179.97438 * 4 1 2 29 29 H 1.09001 * 109.47168 * 142.22677 * 3 2 1 30 30 H 1.09001 * 109.47516 * 22.22945 * 3 2 1 31 31 H 1.09001 * 109.46854 * 59.99711 * 4 3 2 32 32 H 1.09001 * 109.46653 * 300.00326 * 4 3 2 33 33 H 1.00905 * 110.99995 * 56.04878 * 5 4 3 34 34 H 1.08997 * 113.58615 * 106.18841 * 8 6 5 35 35 H 1.09002 * 113.58018 * 335.38903 * 8 6 5 36 36 H 0.97003 * 119.99680 * 72.18942 * 11 9 8 37 37 H 1.09002 * 109.47362 * 59.99907 * 14 12 11 38 38 H 1.09005 * 109.46865 * 300.00021 * 14 12 11 39 39 H 0.97000 * 120.00210 * 180.02562 * 19 18 16 40 40 H 1.09004 * 113.66001 * 215.28795 * 25 24 6 41 41 H 1.08999 * 113.66685 * 346.34231 * 25 24 6 42 42 H 1.08996 * 113.57721 * 270.13207 * 26 25 24 43 43 H 1.08995 * 113.65370 * 139.34269 * 26 25 24 44 44 H 1.08998 * 113.66402 * 13.64984 * 27 24 6 45 45 H 1.09000 * 113.66302 * 144.70382 * 27 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1560 0.1959 1.4293 5 7 4.6249 0.1971 1.4292 6 6 5.1513 0.3834 2.7880 7 1 4.4448 0.0818 3.5612 8 6 5.7741 1.7712 3.0245 9 6 6.8871 1.0568 3.8126 10 1 7.8838 1.4556 3.6241 11 7 6.5938 0.9077 5.2401 12 6 7.2573 1.6531 6.1459 13 8 8.0970 2.4476 5.7792 14 6 6.9560 1.4993 7.6144 15 16 8.0031 2.6275 8.5667 16 6 7.4565 2.2485 10.1983 17 1 6.6881 1.5052 10.3514 18 6 8.0128 2.9061 11.2868 19 7 8.9525 3.8088 11.1005 20 14 7.4339 2.5038 13.0167 21 1 7.6818 1.0673 13.3001 22 1 8.1793 3.3367 13.9944 23 1 5.9807 2.7871 13.1307 24 6 6.5567 -0.1858 2.9851 25 6 6.7686 -1.5910 3.5495 26 6 7.0089 -2.0439 2.0978 27 6 7.4197 -0.5925 1.7901 28 1 -1.0500 0.0002 -0.0001 29 1 3.0090 0.8131 -0.6295 30 1 3.0098 -0.9504 -0.3888 31 1 2.7929 -0.6166 2.0587 32 1 2.7921 1.1470 1.8180 33 1 4.9859 0.9007 0.8023 34 1 5.1572 2.4272 3.6386 35 1 6.1261 2.2524 2.1119 36 1 5.9220 0.2724 5.5334 37 1 7.1562 0.4726 7.9209 38 1 5.9074 1.7350 7.7967 39 1 9.3415 4.2681 11.8612 40 1 7.6489 -1.6785 4.1863 41 1 5.8740 -2.0213 3.9996 42 1 6.1009 -2.3584 1.5833 43 1 7.8242 -2.7595 1.9922 44 1 7.0452 -0.2250 0.8347 45 1 8.4830 -0.3992 1.9324 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202512011.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:56 Heat of formation + Delta-G solvation = 33.112284 kcal Electronic energy + Delta-G solvation = -24061.089230 eV Core-core repulsion = 20592.476275 eV Total energy + Delta-G solvation = -3468.612955 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.04985 -40.07620 -37.30515 -36.14700 -34.65948 -34.57930 -33.14828 -30.78570 -29.54523 -27.67245 -26.64383 -25.53671 -24.89587 -23.26959 -22.32195 -21.35899 -19.94397 -19.33073 -18.70175 -17.93141 -17.24550 -16.88374 -16.77789 -16.52480 -16.36049 -16.13860 -15.95590 -15.50621 -14.85290 -14.63019 -14.35932 -14.25235 -14.10557 -13.78430 -13.51075 -13.19804 -13.17564 -13.10611 -12.98676 -12.87143 -12.65849 -12.60391 -12.39929 -11.89685 -11.76331 -11.32648 -11.28357 -11.13422 -11.03411 -10.96864 -10.87564 -10.84617 -10.28921 -9.95768 -9.30349 -8.67451 -8.34979 -6.13260 1.25693 1.43466 1.45879 1.55701 1.58800 1.86050 1.93259 2.21746 2.27636 2.98883 3.05327 3.30723 3.39559 3.56991 3.69155 3.76308 3.90034 3.94905 3.99616 4.08465 4.19751 4.29190 4.35045 4.44859 4.48945 4.60692 4.61556 4.66165 4.80218 4.92938 4.94312 4.97669 5.02116 5.07643 5.09932 5.19413 5.20814 5.27467 5.40992 5.52707 5.57165 5.69133 6.05266 6.19078 6.45410 6.50890 6.72484 7.06004 7.24271 8.73919 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017062 B = 0.002299 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.719828 B =12176.911241 C =13005.623851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.215 4.215 3 C -0.007 4.007 4 C 0.070 3.930 5 N -0.666 5.666 6 C 0.109 3.891 7 H 0.101 0.899 8 C -0.173 4.173 9 C 0.123 3.877 10 H 0.076 0.924 11 N -0.692 5.692 12 C 0.537 3.463 13 O -0.565 6.565 14 C -0.129 4.129 15 S -0.150 6.150 16 C -0.547 4.547 17 H 0.083 0.917 18 C 0.012 3.988 19 N -0.911 5.911 20 Si 0.999 3.001 21 H -0.262 1.262 22 H -0.279 1.279 23 H -0.262 1.262 24 C -0.090 4.090 25 C -0.128 4.128 26 C -0.122 4.122 27 C -0.101 4.101 28 H 0.239 0.761 29 H 0.095 0.905 30 H 0.101 0.899 31 H 0.071 0.929 32 H 0.028 0.972 33 H 0.352 0.648 34 H 0.060 0.940 35 H 0.102 0.898 36 H 0.413 0.587 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.271 0.729 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.091 0.909 43 H 0.063 0.937 44 H 0.087 0.913 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.122 -12.938 -23.527 30.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.215 4.215 3 C -0.044 4.044 4 C -0.059 4.059 5 N -0.296 5.296 6 C -0.002 4.002 7 H 0.119 0.881 8 C -0.213 4.213 9 C 0.016 3.984 10 H 0.095 0.905 11 N -0.344 5.344 12 C 0.323 3.677 13 O -0.443 6.443 14 C -0.280 4.280 15 S 0.077 5.923 16 C -0.695 4.695 17 H 0.101 0.899 18 C -0.192 4.192 19 N -0.547 5.547 20 Si 0.820 3.180 21 H -0.186 1.186 22 H -0.204 1.204 23 H -0.186 1.186 24 C -0.092 4.092 25 C -0.166 4.166 26 C -0.159 4.159 27 C -0.139 4.139 28 H 0.255 0.745 29 H 0.113 0.887 30 H 0.119 0.881 31 H 0.089 0.911 32 H 0.046 0.954 33 H 0.172 0.828 34 H 0.079 0.921 35 H 0.120 0.880 36 H 0.250 0.750 37 H 0.128 0.872 38 H 0.127 0.873 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.109 0.891 43 H 0.082 0.918 44 H 0.105 0.895 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.569 -12.201 -24.066 29.766 hybrid contribution -1.531 0.079 1.928 2.464 sum -14.101 -12.121 -22.137 28.911 Atomic orbital electron populations 1.25700 0.97042 1.00764 0.99696 1.23617 0.95510 1.00959 1.01460 1.18667 0.83636 1.04617 0.97473 1.21816 0.87604 1.00330 0.96150 1.60310 1.06599 1.54783 1.07926 1.22580 0.93692 0.92729 0.91215 0.88092 1.24124 0.98191 0.97969 1.01062 1.21704 0.98866 0.98460 0.79344 0.90544 1.45325 1.41719 1.42007 1.05314 1.20057 0.80294 0.79812 0.87525 1.90687 1.34608 1.37571 1.81438 1.23368 1.05179 1.05272 0.94226 1.85579 1.52477 1.52370 1.01880 1.23170 1.26734 1.27688 0.91886 0.89914 1.26145 0.94579 0.94129 1.04391 1.70179 1.26185 1.25188 1.33176 0.85000 0.78659 0.78711 0.75606 1.18646 1.20399 1.18645 1.23016 0.96394 0.92463 0.97297 1.22675 1.01678 0.94821 0.97415 1.22678 1.01753 0.95917 0.95541 1.22438 0.97963 0.96434 0.97054 0.74467 0.88652 0.88124 0.91054 0.95374 0.82840 0.92103 0.87975 0.74990 0.87248 0.87294 0.91991 0.91197 0.90817 0.89082 0.91810 0.89474 0.91006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.79 19.25 74.32 1.43 -1.36 16 2 C -0.21 -3.08 13.34 31.12 0.42 -2.67 16 3 C -0.01 -0.07 5.96 28.79 0.17 0.10 16 4 C 0.07 0.77 5.48 86.30 0.47 1.24 16 5 N -0.67 -6.97 5.73 -490.08 -2.81 -9.78 16 6 C 0.11 1.49 3.98 45.20 0.18 1.67 16 7 H 0.10 1.39 7.87 -2.39 -0.02 1.37 16 8 C -0.17 -3.10 7.50 31.23 0.23 -2.87 16 9 C 0.12 2.77 4.13 45.28 0.19 2.96 16 10 H 0.08 2.20 7.46 -2.39 -0.02 2.18 16 11 N -0.69 -17.60 5.05 -441.16 -2.23 -19.83 16 12 C 0.54 19.92 7.85 87.66 0.69 20.60 16 13 O -0.56 -26.44 15.46 -3.03 -0.05 -26.49 16 14 C -0.13 -5.13 6.16 71.23 0.44 -4.69 16 15 S -0.15 -8.39 20.57 -56.49 -1.16 -9.55 16 16 C -0.55 -31.32 9.50 67.96 0.65 -30.68 16 17 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 18 C 0.01 0.71 5.49 84.86 0.47 1.17 16 19 N -0.91 -56.19 13.22 21.65 0.29 -55.90 16 20 Si 1.00 43.65 29.55 68.60 2.03 45.68 16 21 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 22 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 23 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 24 C -0.09 -1.42 0.92 -52.32 -0.05 -1.47 16 25 C -0.13 -2.01 7.49 30.88 0.23 -1.78 16 26 C -0.12 -1.65 8.08 31.23 0.25 -1.39 16 27 C -0.10 -1.46 7.53 30.89 0.23 -1.22 16 28 H 0.24 1.50 7.80 -4.42 -0.03 1.47 16 29 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.07 0.87 8.13 -2.39 -0.02 0.86 16 32 H 0.03 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.35 3.08 8.09 -89.69 -0.73 2.35 16 34 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.10 1.59 7.82 -2.39 -0.02 1.57 16 36 H 0.41 7.96 8.62 -92.71 -0.80 7.17 16 37 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 38 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 39 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 40 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.09 1.06 7.49 -2.39 -0.02 1.04 16 45 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -75.70 392.52 1.53 -74.17 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: -0.54 Total: 22.10 kcal Atomic # 6 Polarization: -26.39 SS G_CDS: 6.00 Total: -20.39 kcal Atomic # 7 Polarization: -80.77 SS G_CDS: -4.75 Total: -85.52 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -0.05 Total: -26.49 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: -8.39 SS G_CDS: -1.16 Total: -9.55 kcal Total: -75.70 1.53 -74.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202512011.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.284 kcal (2) G-P(sol) polarization free energy of solvation -75.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds