Wall clock time and date at job start Tue Mar 31 2020 14:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17390 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52999 * 109.46978 * 192.37517 * 3 2 1 5 5 N 1.46905 * 109.47265 * 180.02562 * 4 3 2 6 6 C 1.46895 * 111.00004 * 180.02562 * 5 4 3 7 7 H 1.09003 * 112.88403 * 23.65547 * 6 5 4 8 8 C 1.54244 * 113.66489 * 252.17721 * 6 5 4 9 9 C 1.53949 * 87.18985 * 270.26568 * 8 6 5 10 10 H 1.09001 * 113.66496 * 220.74908 * 9 8 6 11 11 N 1.46496 * 113.66566 * 89.78578 * 9 8 6 12 12 C 1.34777 * 120.00271 * 106.00926 * 11 9 8 13 13 O 1.21278 * 119.99854 * 0.02562 * 12 11 9 14 14 C 1.50703 * 120.00161 * 180.02562 * 12 11 9 15 15 S 1.81002 * 109.47178 * 180.02562 * 14 12 11 16 16 C 1.76198 * 100.00092 * 180.02562 * 15 14 12 17 17 H 1.08004 * 120.00019 * 0.02562 * 16 15 14 18 18 C 1.38795 * 119.99810 * 179.97438 * 16 15 14 19 19 N 1.31626 * 120.00234 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99664 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47231 * 60.00264 * 20 18 16 22 22 H 1.48505 * 109.47271 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47260 * 299.99689 * 20 18 16 24 24 C 1.52910 * 86.88356 * 335.26795 * 9 8 6 25 25 C 1.52912 * 121.13567 * 259.22954 * 24 9 8 26 26 C 1.53948 * 86.78114 * 209.37912 * 25 24 9 27 27 C 1.52910 * 121.13746 * 150.66601 * 24 9 8 28 28 H 4.44645 * 5.63418 * 180.02562 * 4 1 2 29 29 H 1.09008 * 109.46766 * 72.37921 * 3 2 1 30 30 H 1.08994 * 109.47272 * 312.37579 * 3 2 1 31 31 H 1.08994 * 109.47021 * 60.00007 * 4 3 2 32 32 H 1.09004 * 109.47331 * 300.00026 * 4 3 2 33 33 H 1.00892 * 110.99933 * 56.04250 * 5 4 3 34 34 H 1.08994 * 113.58393 * 155.71085 * 8 6 5 35 35 H 1.09003 * 113.66785 * 24.83078 * 8 6 5 36 36 H 0.97005 * 120.00266 * 286.01509 * 11 9 8 37 37 H 1.09002 * 109.47152 * 60.00245 * 14 12 11 38 38 H 1.09001 * 109.46980 * 300.00345 * 14 12 11 39 39 H 0.97005 * 119.99806 * 179.97438 * 19 18 16 40 40 H 1.08998 * 113.66043 * 323.84907 * 25 24 9 41 41 H 1.09000 * 113.66196 * 94.90549 * 25 24 9 42 42 H 1.08994 * 113.58330 * 270.12939 * 26 25 24 43 43 H 1.09000 * 113.57946 * 139.33606 * 26 25 24 44 44 H 1.08997 * 113.65855 * 265.08718 * 27 24 9 45 45 H 1.08998 * 113.66111 * 36.15025 * 27 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1553 1.4099 0.3091 5 7 4.6243 1.4107 0.3086 6 6 5.1501 2.7504 0.6030 7 1 4.4431 3.3718 1.1527 8 6 5.7748 3.4529 -0.6198 9 6 7.1098 2.8002 -0.2177 10 1 7.9697 3.4615 -0.3243 11 7 7.3257 1.4830 -0.8214 12 6 8.2108 1.3398 -1.8277 13 8 8.8288 2.3014 -2.2331 14 6 8.4325 -0.0151 -2.4491 15 16 9.6709 0.1188 -3.7624 16 6 9.7307 -1.5585 -4.2987 17 1 9.1045 -2.2998 -3.8245 18 6 10.5817 -1.9269 -5.3314 19 7 11.3438 -1.0233 -5.9104 20 14 10.6446 -3.7050 -5.9004 21 1 9.3009 -4.1199 -6.3777 22 1 11.6258 -3.8361 -7.0074 23 1 11.0576 -4.5728 -4.7683 24 6 6.5552 2.7393 1.2060 25 6 6.9710 3.7651 2.2611 26 6 6.7345 2.6585 3.3049 27 6 6.9901 1.6415 2.1776 28 1 -1.0502 -0.0004 0.0001 29 1 3.0094 -0.3103 -0.9795 30 1 3.0096 -0.6918 0.7591 31 1 2.7918 1.7208 1.2885 32 1 2.7916 2.1024 -0.4500 33 1 4.9858 1.0646 -0.5675 34 1 5.7802 4.5401 -0.5425 35 1 5.3860 3.0980 -1.5743 36 1 6.8317 0.7138 -0.4970 37 1 7.4951 -0.3800 -2.8690 38 1 8.7848 -0.7108 -1.6876 39 1 11.9388 -1.2809 -6.6319 40 1 8.0126 4.0763 2.1819 41 1 6.2820 4.6049 2.3501 42 1 5.7157 2.6341 3.6913 43 1 7.4873 2.6343 4.0929 44 1 6.3162 0.7851 2.2000 45 1 8.0370 1.3561 2.0751 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202512014.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:01 Heat of formation + Delta-G solvation = 58.574756 kcal Electronic energy + Delta-G solvation = -24499.778229 eV Core-core repulsion = 21032.269410 eV Total energy + Delta-G solvation = -3467.508820 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.27182 -38.62837 -36.82722 -35.23202 -33.53222 -32.42547 -32.24999 -29.48488 -28.72802 -25.84116 -25.48929 -24.81078 -24.13415 -22.88821 -21.13008 -20.18607 -18.82541 -18.18359 -17.63011 -16.61675 -16.21630 -15.90193 -15.64617 -15.48135 -14.91014 -14.80769 -14.78603 -14.27707 -13.98211 -13.53581 -13.32038 -13.23215 -13.02944 -12.64034 -12.46330 -12.43709 -12.15937 -12.07988 -11.87223 -11.76792 -11.13387 -11.03946 -11.03140 -10.77648 -10.64268 -10.46249 -10.42102 -10.27072 -10.02593 -9.79612 -9.37254 -9.05590 -8.82586 -8.73189 -8.23303 -6.49365 -6.20971 -3.91537 2.46834 2.54602 2.98024 3.08008 3.24038 3.26865 3.29813 3.50771 3.76533 4.15085 4.21200 4.26475 4.42922 4.53681 4.60828 4.68007 4.75216 4.81071 4.89037 5.13779 5.14186 5.14968 5.16823 5.31427 5.46390 5.48715 5.57474 5.59840 5.64225 5.65092 5.66873 5.71785 5.73820 5.78987 5.89150 5.95911 6.03888 6.14604 6.21139 6.31469 6.63994 6.77021 6.96295 7.31323 7.59898 7.76057 8.35624 8.63721 9.24276 10.86377 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010933 B = 0.003047 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2560.348392 B = 9188.284144 C =10964.381774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.183 4.183 3 C -0.015 4.015 4 C 0.068 3.932 5 N -0.671 5.671 6 C 0.092 3.908 7 H 0.085 0.915 8 C -0.180 4.180 9 C 0.140 3.860 10 H 0.100 0.900 11 N -0.718 5.718 12 C 0.533 3.467 13 O -0.516 6.516 14 C -0.153 4.153 15 S -0.059 6.059 16 C -0.536 4.536 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.868 5.868 20 Si 0.918 3.082 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 C -0.104 4.104 25 C -0.108 4.108 26 C -0.138 4.138 27 C -0.117 4.117 28 H 0.216 0.784 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.036 0.964 33 H 0.345 0.655 34 H 0.093 0.907 35 H 0.072 0.928 36 H 0.400 0.600 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.269 0.731 40 H 0.087 0.913 41 H 0.067 0.933 42 H 0.077 0.923 43 H 0.064 0.936 44 H 0.080 0.920 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.896 6.318 17.908 26.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.184 4.184 3 C -0.052 4.052 4 C -0.061 4.061 5 N -0.302 5.302 6 C -0.018 4.018 7 H 0.103 0.897 8 C -0.221 4.221 9 C 0.033 3.967 10 H 0.118 0.882 11 N -0.372 5.372 12 C 0.319 3.681 13 O -0.390 6.390 14 C -0.304 4.304 15 S 0.167 5.833 16 C -0.684 4.684 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.199 1.199 24 C -0.106 4.106 25 C -0.147 4.147 26 C -0.176 4.176 27 C -0.155 4.155 28 H 0.233 0.767 29 H 0.106 0.894 30 H 0.116 0.884 31 H 0.095 0.905 32 H 0.054 0.946 33 H 0.166 0.834 34 H 0.111 0.889 35 H 0.091 0.909 36 H 0.236 0.764 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.079 0.921 40 H 0.105 0.895 41 H 0.086 0.914 42 H 0.095 0.905 43 H 0.083 0.917 44 H 0.099 0.901 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -16.659 7.722 17.711 25.511 hybrid contribution -1.339 -2.149 -0.678 2.621 sum -17.998 5.573 17.033 25.399 Atomic orbital electron populations 1.24917 0.95993 1.00491 1.01401 1.23008 0.94442 1.00677 1.00251 1.18689 0.84547 0.98184 1.03747 1.21874 0.87298 0.95393 1.01544 1.60238 1.06974 1.23089 1.39934 1.22359 0.94551 0.88814 0.96105 0.89658 1.24167 0.98203 1.01219 0.98497 1.21594 0.97504 0.85696 0.91903 0.88226 1.45751 1.44247 1.10063 1.37188 1.20348 0.78146 0.90783 0.78783 1.90698 1.46685 1.40886 1.60733 1.23536 1.06274 0.96157 1.04440 1.85399 1.47540 1.13516 1.36819 1.22829 1.28729 0.94118 1.22738 0.90969 1.24986 0.94619 0.98563 0.95390 1.70008 1.23472 1.33534 1.23315 0.86232 0.78086 0.82906 0.78320 1.19941 1.20833 1.19920 1.22957 0.95698 0.99168 0.92787 1.22581 1.01769 0.96030 0.94284 1.22802 1.01507 0.96679 0.96576 1.22531 1.01525 0.97054 0.94363 0.76668 0.89400 0.88444 0.90455 0.94594 0.83373 0.88857 0.90931 0.76396 0.89299 0.89163 0.92138 0.89451 0.91388 0.90459 0.91696 0.90089 0.90204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.69 19.25 29.55 0.57 -1.13 16 2 C -0.18 -1.64 13.34 -37.12 -0.50 -2.13 16 3 C -0.01 -0.11 5.96 -29.52 -0.18 -0.29 16 4 C 0.07 0.50 5.48 -3.82 -0.02 0.48 16 5 N -0.67 -5.29 5.61 -106.08 -0.59 -5.89 16 6 C 0.09 0.77 4.08 -67.11 -0.27 0.49 16 7 H 0.09 0.66 7.87 -51.93 -0.41 0.25 16 8 C -0.18 -1.79 7.45 -25.59 -0.19 -1.98 16 9 C 0.14 1.64 4.09 -67.48 -0.28 1.36 16 10 H 0.10 1.40 7.50 -51.93 -0.39 1.01 16 11 N -0.72 -9.42 4.55 -53.37 -0.24 -9.66 16 12 C 0.53 9.77 7.85 -10.98 -0.09 9.68 16 13 O -0.52 -11.60 15.48 5.56 0.09 -11.52 16 14 C -0.15 -3.05 6.16 36.01 0.22 -2.83 16 15 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 16 C -0.54 -15.20 9.50 30.94 0.29 -14.91 16 17 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 18 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 19 N -0.87 -26.17 13.22 55.49 0.73 -25.44 16 20 Si 0.92 21.36 29.55 -169.99 -5.02 16.34 16 21 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 24 C -0.10 -0.94 0.82 -154.71 -0.13 -1.06 16 25 C -0.11 -0.86 7.84 -26.28 -0.21 -1.07 16 26 C -0.14 -1.07 8.08 -25.75 -0.21 -1.27 16 27 C -0.12 -1.05 7.31 -26.28 -0.19 -1.25 16 28 H 0.22 1.02 7.80 -54.08 -0.42 0.60 16 29 H 0.09 0.64 8.14 -51.92 -0.42 0.21 16 30 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.56 8.13 -51.93 -0.42 0.14 16 32 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.35 2.93 6.35 -39.30 -0.25 2.68 16 34 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.80 8.07 -51.93 -0.42 0.38 16 36 H 0.40 4.39 6.76 -40.82 -0.28 4.11 16 37 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 38 H 0.09 1.67 8.14 -51.91 -0.42 1.24 16 39 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 40 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.08 0.74 7.75 -51.93 -0.40 0.34 16 45 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 388.94 15.07 5.86 5.86 Total: -1.00 -33.49 388.94 -9.84 -43.33 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -7.18 Total: 4.68 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: -1.26 Total: -13.89 kcal Atomic # 7 Polarization: -40.88 SS G_CDS: -0.10 Total: -40.99 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.09 Total: -11.52 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.49 -9.84 -43.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202512014.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.907 kcal (2) G-P(sol) polarization free energy of solvation -33.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds