Wall clock time and date at job start Tue Mar 31 2020 14:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17390 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52999 * 109.46978 * 192.37517 * 3 2 1 5 5 N 1.46905 * 109.47265 * 180.02562 * 4 3 2 6 6 C 1.46895 * 111.00004 * 180.02562 * 5 4 3 7 7 H 1.09003 * 112.88403 * 23.65547 * 6 5 4 8 8 C 1.54244 * 113.66489 * 252.17721 * 6 5 4 9 9 C 1.53949 * 87.18985 * 270.26568 * 8 6 5 10 10 H 1.09001 * 113.66496 * 220.74908 * 9 8 6 11 11 N 1.46496 * 113.66566 * 89.78578 * 9 8 6 12 12 C 1.34777 * 120.00271 * 106.00926 * 11 9 8 13 13 O 1.21278 * 119.99854 * 0.02562 * 12 11 9 14 14 C 1.50703 * 120.00161 * 180.02562 * 12 11 9 15 15 S 1.81002 * 109.47178 * 180.02562 * 14 12 11 16 16 C 1.76198 * 100.00092 * 180.02562 * 15 14 12 17 17 H 1.08004 * 120.00019 * 0.02562 * 16 15 14 18 18 C 1.38795 * 119.99810 * 179.97438 * 16 15 14 19 19 N 1.31626 * 120.00234 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99664 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47231 * 60.00264 * 20 18 16 22 22 H 1.48505 * 109.47271 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47260 * 299.99689 * 20 18 16 24 24 C 1.52910 * 86.88356 * 335.26795 * 9 8 6 25 25 C 1.52912 * 121.13567 * 259.22954 * 24 9 8 26 26 C 1.53948 * 86.78114 * 209.37912 * 25 24 9 27 27 C 1.52910 * 121.13746 * 150.66601 * 24 9 8 28 28 H 4.44645 * 5.63418 * 180.02562 * 4 1 2 29 29 H 1.09008 * 109.46766 * 72.37921 * 3 2 1 30 30 H 1.08994 * 109.47272 * 312.37579 * 3 2 1 31 31 H 1.08994 * 109.47021 * 60.00007 * 4 3 2 32 32 H 1.09004 * 109.47331 * 300.00026 * 4 3 2 33 33 H 1.00892 * 110.99933 * 56.04250 * 5 4 3 34 34 H 1.08994 * 113.58393 * 155.71085 * 8 6 5 35 35 H 1.09003 * 113.66785 * 24.83078 * 8 6 5 36 36 H 0.97005 * 120.00266 * 286.01509 * 11 9 8 37 37 H 1.09002 * 109.47152 * 60.00245 * 14 12 11 38 38 H 1.09001 * 109.46980 * 300.00345 * 14 12 11 39 39 H 0.97005 * 119.99806 * 179.97438 * 19 18 16 40 40 H 1.08998 * 113.66043 * 323.84907 * 25 24 9 41 41 H 1.09000 * 113.66196 * 94.90549 * 25 24 9 42 42 H 1.08994 * 113.58330 * 270.12939 * 26 25 24 43 43 H 1.09000 * 113.57946 * 139.33606 * 26 25 24 44 44 H 1.08997 * 113.65855 * 265.08718 * 27 24 9 45 45 H 1.08998 * 113.66111 * 36.15025 * 27 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1553 1.4099 0.3091 5 7 4.6243 1.4107 0.3086 6 6 5.1501 2.7504 0.6030 7 1 4.4431 3.3718 1.1527 8 6 5.7748 3.4529 -0.6198 9 6 7.1098 2.8002 -0.2177 10 1 7.9697 3.4615 -0.3243 11 7 7.3257 1.4830 -0.8214 12 6 8.2108 1.3398 -1.8277 13 8 8.8288 2.3014 -2.2331 14 6 8.4325 -0.0151 -2.4491 15 16 9.6709 0.1188 -3.7624 16 6 9.7307 -1.5585 -4.2987 17 1 9.1045 -2.2998 -3.8245 18 6 10.5817 -1.9269 -5.3314 19 7 11.3438 -1.0233 -5.9104 20 14 10.6446 -3.7050 -5.9004 21 1 9.3009 -4.1199 -6.3777 22 1 11.6258 -3.8361 -7.0074 23 1 11.0576 -4.5728 -4.7683 24 6 6.5552 2.7393 1.2060 25 6 6.9710 3.7651 2.2611 26 6 6.7345 2.6585 3.3049 27 6 6.9901 1.6415 2.1776 28 1 -1.0502 -0.0004 0.0001 29 1 3.0094 -0.3103 -0.9795 30 1 3.0096 -0.6918 0.7591 31 1 2.7918 1.7208 1.2885 32 1 2.7916 2.1024 -0.4500 33 1 4.9858 1.0646 -0.5675 34 1 5.7802 4.5401 -0.5425 35 1 5.3860 3.0980 -1.5743 36 1 6.8317 0.7138 -0.4970 37 1 7.4951 -0.3800 -2.8690 38 1 8.7848 -0.7108 -1.6876 39 1 11.9388 -1.2809 -6.6319 40 1 8.0126 4.0763 2.1819 41 1 6.2820 4.6049 2.3501 42 1 5.7157 2.6341 3.6913 43 1 7.4873 2.6343 4.0929 44 1 6.3162 0.7851 2.2000 45 1 8.0370 1.3561 2.0751 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202512014.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:00 Heat of formation + Delta-G solvation = 37.515651 kcal Electronic energy + Delta-G solvation = -24500.691420 eV Core-core repulsion = 21032.269410 eV Total energy + Delta-G solvation = -3468.422011 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.14095 -40.02700 -37.46441 -36.07966 -34.58802 -34.47115 -33.19954 -30.72554 -29.65637 -27.66991 -26.53792 -25.55516 -24.98910 -23.56268 -22.03041 -21.42610 -20.00496 -19.34712 -18.68230 -17.91877 -17.25853 -16.87246 -16.75302 -16.48474 -16.30475 -16.08102 -15.91901 -15.59461 -14.95244 -14.73678 -14.48738 -14.13248 -14.08581 -13.93041 -13.48276 -13.19878 -13.15864 -13.14034 -12.86543 -12.82164 -12.68527 -12.63269 -12.47044 -11.94582 -11.75509 -11.29439 -11.21900 -11.12344 -11.05549 -10.97417 -10.89271 -10.78082 -10.27167 -9.95082 -9.43361 -8.65991 -8.33912 -6.11932 1.26736 1.44421 1.46785 1.56504 1.60042 1.85177 1.93109 2.19627 2.28571 2.90946 3.00206 3.32316 3.41306 3.58465 3.71133 3.78088 3.89456 3.93185 4.00586 4.06559 4.18389 4.30196 4.31069 4.48305 4.50862 4.56486 4.58089 4.73070 4.77590 4.86557 4.90617 4.96379 4.99432 5.05089 5.07479 5.16088 5.19658 5.30757 5.42355 5.49347 5.57863 5.64228 6.01872 6.20337 6.26905 6.52623 6.71809 7.07346 7.25559 8.75039 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010933 B = 0.003047 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2560.348392 B = 9188.284144 C =10964.381774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.216 4.216 3 C -0.012 4.012 4 C 0.075 3.925 5 N -0.669 5.669 6 C 0.106 3.894 7 H 0.103 0.897 8 C -0.176 4.176 9 C 0.122 3.878 10 H 0.073 0.927 11 N -0.691 5.691 12 C 0.536 3.464 13 O -0.565 6.565 14 C -0.129 4.129 15 S -0.150 6.150 16 C -0.546 4.546 17 H 0.083 0.917 18 C 0.013 3.987 19 N -0.912 5.912 20 Si 0.998 3.002 21 H -0.262 1.262 22 H -0.280 1.280 23 H -0.262 1.262 24 C -0.095 4.095 25 C -0.107 4.107 26 C -0.129 4.129 27 C -0.120 4.120 28 H 0.242 0.758 29 H 0.087 0.913 30 H 0.102 0.898 31 H 0.083 0.917 32 H 0.031 0.969 33 H 0.342 0.658 34 H 0.104 0.896 35 H 0.061 0.939 36 H 0.414 0.586 37 H 0.111 0.889 38 H 0.108 0.892 39 H 0.271 0.729 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.089 0.911 43 H 0.068 0.932 44 H 0.083 0.917 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.229 5.132 19.658 28.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.217 4.217 3 C -0.049 4.049 4 C -0.054 4.054 5 N -0.300 5.300 6 C -0.005 4.005 7 H 0.121 0.879 8 C -0.216 4.216 9 C 0.016 3.984 10 H 0.091 0.909 11 N -0.344 5.344 12 C 0.322 3.678 13 O -0.443 6.443 14 C -0.281 4.281 15 S 0.077 5.923 16 C -0.694 4.694 17 H 0.101 0.899 18 C -0.191 4.191 19 N -0.548 5.548 20 Si 0.819 3.181 21 H -0.186 1.186 22 H -0.205 1.205 23 H -0.186 1.186 24 C -0.097 4.097 25 C -0.146 4.146 26 C -0.166 4.166 27 C -0.158 4.158 28 H 0.258 0.742 29 H 0.105 0.895 30 H 0.120 0.880 31 H 0.101 0.899 32 H 0.050 0.950 33 H 0.162 0.838 34 H 0.123 0.877 35 H 0.079 0.921 36 H 0.252 0.748 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.080 0.920 40 H 0.098 0.902 41 H 0.102 0.898 42 H 0.107 0.893 43 H 0.087 0.913 44 H 0.101 0.899 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -19.041 6.528 19.514 28.035 hybrid contribution -0.701 -1.716 -1.129 2.171 sum -19.742 4.812 18.384 27.402 Atomic orbital electron populations 1.25701 0.96964 0.99533 1.00464 1.23495 0.95329 1.01635 1.01194 1.18679 0.84101 0.98288 1.03864 1.21819 0.86631 0.95284 1.01657 1.60246 1.07456 1.22711 1.39598 1.22283 0.94407 0.88958 0.94871 0.87914 1.24168 0.96692 1.01977 0.98806 1.21838 0.97624 0.84443 0.94461 0.90905 1.45455 1.42337 1.11477 1.35179 1.20093 0.78645 0.89501 0.79558 1.90686 1.48960 1.42000 1.62618 1.23374 1.04609 0.97776 1.02314 1.85582 1.51290 1.14727 1.40655 1.23177 1.29011 0.94173 1.23061 0.89863 1.26124 0.93933 1.03743 0.95344 1.70179 1.24446 1.36180 1.24034 0.85013 0.78592 0.76448 0.78001 1.18607 1.20471 1.18641 1.22973 0.95607 1.00040 0.91043 1.22608 1.01817 0.96500 0.93636 1.22768 1.02307 0.95421 0.96128 1.22522 1.00674 0.97404 0.95180 0.74187 0.89463 0.88020 0.89905 0.95033 0.83807 0.87747 0.92068 0.74754 0.87113 0.87331 0.92015 0.90153 0.89783 0.89287 0.91290 0.89875 0.91665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.98 19.25 74.32 1.43 -1.55 16 2 C -0.22 -3.53 13.34 31.13 0.42 -3.12 16 3 C -0.01 -0.17 5.96 28.79 0.17 0.01 16 4 C 0.07 0.95 5.48 86.30 0.47 1.42 16 5 N -0.67 -9.09 5.61 -489.54 -2.75 -11.83 16 6 C 0.11 1.50 4.08 45.31 0.19 1.69 16 7 H 0.10 1.21 7.87 -2.39 -0.02 1.19 16 8 C -0.18 -3.28 7.45 31.33 0.23 -3.05 16 9 C 0.12 2.82 4.09 45.28 0.19 3.00 16 10 H 0.07 2.12 7.50 -2.39 -0.02 2.10 16 11 N -0.69 -17.73 4.55 -441.16 -2.01 -19.74 16 12 C 0.54 19.84 7.85 87.66 0.69 20.53 16 13 O -0.56 -26.38 15.48 -3.02 -0.05 -26.43 16 14 C -0.13 -5.12 6.16 71.24 0.44 -4.68 16 15 S -0.15 -8.33 20.57 -56.49 -1.16 -9.49 16 16 C -0.55 -31.19 9.50 67.95 0.65 -30.54 16 17 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 18 C 0.01 0.76 5.49 84.86 0.47 1.22 16 19 N -0.91 -56.24 13.22 21.65 0.29 -55.95 16 20 Si 1.00 43.58 29.55 68.60 2.03 45.61 16 21 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 22 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 23 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 24 C -0.09 -1.54 0.82 -52.31 -0.04 -1.58 16 25 C -0.11 -1.49 7.84 30.88 0.24 -1.25 16 26 C -0.13 -1.66 8.08 31.23 0.25 -1.41 16 27 C -0.12 -1.95 7.31 30.89 0.23 -1.72 16 28 H 0.24 1.69 7.80 -4.41 -0.03 1.65 16 29 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 30 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.08 0.98 8.13 -2.39 -0.02 0.96 16 32 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.34 5.16 6.35 -89.70 -0.57 4.59 16 34 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.06 1.30 8.07 -2.39 -0.02 1.28 16 36 H 0.41 8.45 6.76 -92.70 -0.63 7.82 16 37 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 38 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 39 H 0.27 15.54 8.31 -92.70 -0.77 14.77 16 40 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.08 1.32 7.75 -2.39 -0.02 1.31 16 45 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -75.02 388.94 2.15 -72.87 By element: Atomic # 1 Polarization: 26.22 SS G_CDS: -0.21 Total: 26.01 kcal Atomic # 6 Polarization: -27.05 SS G_CDS: 6.01 Total: -21.04 kcal Atomic # 7 Polarization: -83.06 SS G_CDS: -4.47 Total: -87.53 kcal Atomic # 8 Polarization: -26.38 SS G_CDS: -0.05 Total: -26.43 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 16 Polarization: -8.33 SS G_CDS: -1.16 Total: -9.49 kcal Total: -75.02 2.15 -72.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202512014.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.384 kcal (2) G-P(sol) polarization free energy of solvation -75.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds