Wall clock time and date at job start Tue Mar 31 2020 14:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47534 * 1.69375 * 3 2 1 5 5 N 1.46899 * 109.47254 * 179.97438 * 4 3 2 6 6 C 1.46904 * 111.00029 * 179.97438 * 5 4 3 7 7 H 1.08996 * 112.88617 * 336.34791 * 6 5 4 8 8 C 1.53951 * 113.65705 * 107.81449 * 6 5 4 9 9 C 1.53954 * 87.29271 * 139.20820 * 8 6 5 10 10 H 1.09003 * 113.65894 * 220.79367 * 9 8 6 11 11 N 1.46491 * 113.66357 * 89.73536 * 9 8 6 12 12 C 1.34782 * 120.00091 * 107.81262 * 11 9 8 13 13 O 1.21278 * 119.99770 * 0.02562 * 12 11 9 14 14 C 1.50696 * 120.00298 * 179.97438 * 12 11 9 15 15 S 1.81000 * 109.47408 * 180.02562 * 14 12 11 16 16 C 1.76200 * 100.00130 * 180.02562 * 15 14 12 17 17 H 1.07992 * 120.00253 * 359.97438 * 16 15 14 18 18 C 1.38799 * 119.99729 * 180.02562 * 16 15 14 19 19 N 1.31625 * 119.99646 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 120.00137 * 359.97438 * 18 16 15 21 21 H 1.48507 * 109.46810 * 90.00565 * 20 18 16 22 22 H 1.48500 * 109.47203 * 210.00311 * 20 18 16 23 23 H 1.48497 * 109.47146 * 330.00612 * 20 18 16 24 24 C 1.52911 * 86.78333 * 335.26417 * 9 8 6 25 25 C 1.52898 * 121.13836 * 150.62121 * 24 9 8 26 26 C 1.53954 * 86.78612 * 100.82025 * 25 24 9 27 27 C 1.52905 * 121.13706 * 259.18595 * 24 9 8 28 28 H 4.44646 * 5.63314 * 179.97438 * 4 1 2 29 29 H 1.09002 * 109.47018 * 241.69148 * 3 2 1 30 30 H 1.08998 * 109.46895 * 121.69992 * 3 2 1 31 31 H 1.09002 * 109.47153 * 59.99856 * 4 3 2 32 32 H 1.09001 * 109.46832 * 300.00046 * 4 3 2 33 33 H 1.00902 * 111.00582 * 303.95797 * 5 4 3 34 34 H 1.08999 * 113.58114 * 253.80716 * 8 6 5 35 35 H 1.08994 * 113.58038 * 24.60539 * 8 6 5 36 36 H 0.96998 * 120.00491 * 287.81589 * 11 9 8 37 37 H 1.08998 * 109.47212 * 300.00318 * 14 12 11 38 38 H 1.08999 * 109.47131 * 59.99779 * 14 12 11 39 39 H 0.97011 * 120.00146 * 179.97438 * 19 18 16 40 40 H 1.09006 * 113.66577 * 215.29009 * 25 24 9 41 41 H 1.09003 * 113.66757 * 346.34735 * 25 24 9 42 42 H 1.08997 * 113.57907 * 270.13234 * 26 25 24 43 43 H 1.08995 * 113.65169 * 139.34441 * 26 25 24 44 44 H 1.09001 * 113.66379 * 13.64856 * 27 24 9 45 45 H 1.09003 * 113.66601 * 144.70674 * 27 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1567 -1.4409 -0.0426 5 7 4.6257 -1.4402 -0.0433 6 6 5.1529 -2.8108 -0.0832 7 1 4.4466 -3.5479 0.2988 8 6 5.7766 -3.1935 -1.4376 9 6 6.8896 -3.9004 -0.6427 10 1 7.8858 -3.7538 -1.0600 11 7 6.5969 -5.3040 -0.3423 12 6 7.2613 -6.2838 -0.9865 13 8 8.1018 -6.0034 -1.8146 14 6 6.9607 -7.7277 -0.6771 15 16 8.0088 -8.7942 -1.6969 16 6 7.4629 -10.3765 -1.1462 17 1 6.6949 -10.4499 -0.3906 18 6 8.0208 -11.5285 -1.6829 19 7 7.6134 -12.7105 -1.2712 20 14 9.3498 -11.4016 -2.9895 21 1 10.6831 -11.3583 -2.3368 22 1 9.2761 -12.5824 -3.8869 23 1 9.1469 -10.1631 -3.7833 24 6 6.5581 -2.9452 0.5045 25 6 6.7697 -3.3565 1.9618 26 6 8.0667 -2.5283 1.9167 27 6 7.4203 -1.7133 0.7817 28 1 -1.0497 -0.0005 0.0002 29 1 3.0091 0.4882 0.9048 30 1 3.0090 0.5408 -0.8743 31 1 2.7936 -1.9284 -0.9474 32 1 2.7937 -1.9810 0.8318 33 1 4.9868 -0.8911 -0.8089 34 1 5.1604 -3.8745 -2.0247 35 1 6.1284 -2.3374 -2.0132 36 1 5.9249 -5.5283 0.3203 37 1 7.1605 -7.9227 0.3765 38 1 5.9124 -7.9347 -0.8924 39 1 8.0030 -13.5157 -1.6466 40 1 6.0185 -2.9562 2.6429 41 1 6.9375 -4.4252 2.0950 42 1 8.9387 -3.1007 1.6006 43 1 8.2469 -1.9484 2.8219 44 1 8.1080 -1.4693 -0.0280 45 1 6.8521 -0.8511 1.1310 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202512021.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:08 Heat of formation + Delta-G solvation = 55.207985 kcal Electronic energy + Delta-G solvation = -24103.868221 eV Core-core repulsion = 20636.213407 eV Total energy + Delta-G solvation = -3467.654814 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.25332 -38.78831 -36.84274 -35.26792 -33.88956 -32.45288 -32.26308 -29.71478 -28.68074 -26.00108 -25.63445 -24.85714 -24.12536 -22.71320 -21.34962 -20.33035 -18.81638 -18.28918 -17.70736 -16.61676 -16.24466 -16.10048 -15.84839 -15.57458 -15.05740 -14.96100 -14.86752 -14.20533 -13.75172 -13.69638 -13.46606 -13.22591 -13.03874 -12.80605 -12.69473 -12.51663 -12.19520 -12.14410 -11.94850 -11.84164 -11.27662 -11.21183 -11.01739 -10.73434 -10.66150 -10.53218 -10.47623 -10.26160 -10.13162 -9.86735 -9.55132 -9.02602 -8.96416 -8.68371 -8.51524 -6.93059 -6.29861 -4.01704 2.40003 2.46498 2.72124 2.91824 3.24892 3.32675 3.49605 3.58765 3.64743 4.13648 4.18515 4.30660 4.32268 4.48747 4.59457 4.61434 4.67572 4.71453 4.74191 4.86119 5.06657 5.09199 5.12768 5.19773 5.32280 5.39980 5.45762 5.52932 5.58804 5.63986 5.64732 5.67504 5.74219 5.74937 5.79445 5.82470 5.90600 5.99620 6.22342 6.29591 6.53760 6.68590 6.97461 7.23902 7.59286 7.93157 8.40723 8.46629 9.16259 10.79320 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017763 B = 0.002386 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.906334 B =11730.972468 C =12574.823151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.187 4.187 3 C -0.011 4.011 4 C 0.063 3.937 5 N -0.674 5.674 6 C 0.081 3.919 7 H 0.097 0.903 8 C -0.178 4.178 9 C 0.151 3.849 10 H 0.104 0.896 11 N -0.717 5.717 12 C 0.534 3.466 13 O -0.517 6.517 14 C -0.124 4.124 15 S -0.141 6.141 16 C -0.522 4.522 17 H 0.088 0.912 18 C 0.095 3.905 19 N -0.880 5.880 20 Si 0.857 3.143 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.235 1.235 24 C -0.102 4.102 25 C -0.124 4.124 26 C -0.141 4.141 27 C -0.100 4.100 28 H 0.217 0.783 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.035 0.965 32 H 0.076 0.924 33 H 0.344 0.656 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.399 0.601 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.271 0.729 40 H 0.084 0.916 41 H 0.068 0.932 42 H 0.078 0.922 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.841 27.109 5.522 29.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.188 4.188 3 C -0.048 4.048 4 C -0.066 4.066 5 N -0.304 5.304 6 C -0.029 4.029 7 H 0.115 0.885 8 C -0.219 4.219 9 C 0.044 3.956 10 H 0.122 0.878 11 N -0.369 5.369 12 C 0.320 3.680 13 O -0.392 6.392 14 C -0.275 4.275 15 S 0.085 5.915 16 C -0.669 4.669 17 H 0.106 0.894 18 C -0.114 4.114 19 N -0.517 5.517 20 Si 0.682 3.318 21 H -0.192 1.192 22 H -0.199 1.199 23 H -0.159 1.159 24 C -0.104 4.104 25 C -0.162 4.162 26 C -0.179 4.179 27 C -0.138 4.138 28 H 0.233 0.767 29 H 0.113 0.887 30 H 0.103 0.897 31 H 0.053 0.947 32 H 0.094 0.906 33 H 0.163 0.837 34 H 0.091 0.909 35 H 0.109 0.891 36 H 0.234 0.766 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.081 0.919 40 H 0.102 0.898 41 H 0.086 0.914 42 H 0.097 0.903 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.369 27.410 4.807 28.788 hybrid contribution -1.286 -1.009 -0.151 1.642 sum -8.655 26.401 4.655 28.171 Atomic orbital electron populations 1.24941 0.96032 1.00311 1.01267 1.23042 0.94508 1.00826 1.00385 1.18662 0.84469 0.97794 1.03884 1.21903 0.87957 0.95448 1.01268 1.60322 1.06483 1.12555 1.51003 1.22894 0.95102 0.89531 0.95376 0.88498 1.24131 0.99141 1.01265 0.97352 1.21310 0.99453 0.80178 0.94637 0.87777 1.45591 1.42773 1.04623 1.43947 1.20296 0.80404 0.86893 0.80390 1.90697 1.32241 1.83751 1.32462 1.23278 1.05326 0.93543 1.05336 1.84792 1.52378 1.00970 1.53319 1.22313 1.27238 0.89174 1.28185 0.89384 1.24718 0.96275 0.94207 0.96152 1.69939 1.42080 0.97371 1.42261 0.86732 0.82513 0.80012 0.82574 1.19189 1.19940 1.15941 1.23034 0.95237 0.97464 0.94635 1.22652 0.97935 1.00286 0.95308 1.22828 0.97355 0.98754 0.98930 1.22463 0.97218 0.95889 0.98219 0.76657 0.88668 0.89718 0.94700 0.90564 0.83707 0.90863 0.89147 0.76643 0.88456 0.88485 0.91936 0.89768 0.91351 0.90340 0.91613 0.91739 0.88527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.51 19.25 29.55 0.57 -0.94 16 2 C -0.19 -1.47 13.34 -37.12 -0.50 -1.97 16 3 C -0.01 -0.07 5.96 -29.52 -0.18 -0.24 16 4 C 0.06 0.41 5.48 -3.83 -0.02 0.39 16 5 N -0.67 -4.29 5.82 -106.25 -0.62 -4.91 16 6 C 0.08 0.62 3.98 -67.26 -0.27 0.35 16 7 H 0.10 0.77 7.87 -51.93 -0.41 0.37 16 8 C -0.18 -1.62 7.50 -25.75 -0.19 -1.81 16 9 C 0.15 1.65 4.12 -67.48 -0.28 1.37 16 10 H 0.10 1.37 7.47 -51.93 -0.39 0.99 16 11 N -0.72 -8.86 4.80 -53.37 -0.26 -9.12 16 12 C 0.53 9.27 7.85 -10.99 -0.09 9.18 16 13 O -0.52 -10.99 15.46 5.56 0.09 -10.90 16 14 C -0.12 -2.37 6.16 36.00 0.22 -2.15 16 15 S -0.14 -3.56 18.55 -107.50 -1.99 -5.55 16 16 C -0.52 -14.98 10.04 30.94 0.31 -14.67 16 17 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 18 C 0.10 2.78 5.50 -17.43 -0.10 2.69 16 19 N -0.88 -26.53 13.97 55.49 0.78 -25.75 16 20 Si 0.86 21.78 27.74 -169.99 -4.71 17.06 16 21 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 23 H -0.24 -5.97 6.74 56.52 0.38 -5.59 16 24 C -0.10 -0.85 0.92 -154.72 -0.14 -0.99 16 25 C -0.12 -1.05 7.62 -26.29 -0.20 -1.25 16 26 C -0.14 -1.19 8.08 -25.74 -0.21 -1.39 16 27 C -0.10 -0.77 7.44 -26.28 -0.20 -0.97 16 28 H 0.22 0.88 7.80 -54.11 -0.42 0.46 16 29 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.08 0.55 8.13 -51.93 -0.42 0.12 16 33 H 0.34 1.92 8.19 -39.29 -0.32 1.60 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.09 0.73 7.82 -51.93 -0.41 0.33 16 36 H 0.40 3.98 8.42 -40.82 -0.34 3.63 16 37 H 0.10 1.73 8.14 -51.92 -0.42 1.30 16 38 H 0.10 1.72 8.14 -51.92 -0.42 1.30 16 39 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.63 7.58 -51.93 -0.39 0.24 16 42 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.10 0.70 7.77 -51.93 -0.40 0.30 16 LS Contribution 389.35 15.07 5.87 5.87 Total: -1.00 -33.39 389.35 -9.43 -42.81 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -7.31 Total: 2.88 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: -1.26 Total: -12.40 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: -0.10 Total: -39.78 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.09 Total: -10.90 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.71 Total: 17.06 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -1.99 Total: -5.55 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.39 -9.43 -42.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202512021.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.022 kcal (2) G-P(sol) polarization free energy of solvation -33.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds