Wall clock time and date at job start Tue Mar 31 2020 14:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47534 * 1.69375 * 3 2 1 5 5 N 1.46899 * 109.47254 * 179.97438 * 4 3 2 6 6 C 1.46904 * 111.00029 * 179.97438 * 5 4 3 7 7 H 1.08996 * 112.88617 * 336.34791 * 6 5 4 8 8 C 1.53951 * 113.65705 * 107.81449 * 6 5 4 9 9 C 1.53954 * 87.29271 * 139.20820 * 8 6 5 10 10 H 1.09003 * 113.65894 * 220.79367 * 9 8 6 11 11 N 1.46491 * 113.66357 * 89.73536 * 9 8 6 12 12 C 1.34782 * 120.00091 * 107.81262 * 11 9 8 13 13 O 1.21278 * 119.99770 * 0.02562 * 12 11 9 14 14 C 1.50696 * 120.00298 * 179.97438 * 12 11 9 15 15 S 1.81000 * 109.47408 * 180.02562 * 14 12 11 16 16 C 1.76200 * 100.00130 * 180.02562 * 15 14 12 17 17 H 1.07992 * 120.00253 * 359.97438 * 16 15 14 18 18 C 1.38799 * 119.99729 * 180.02562 * 16 15 14 19 19 N 1.31625 * 119.99646 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 120.00137 * 359.97438 * 18 16 15 21 21 H 1.48507 * 109.46810 * 90.00565 * 20 18 16 22 22 H 1.48500 * 109.47203 * 210.00311 * 20 18 16 23 23 H 1.48497 * 109.47146 * 330.00612 * 20 18 16 24 24 C 1.52911 * 86.78333 * 335.26417 * 9 8 6 25 25 C 1.52898 * 121.13836 * 150.62121 * 24 9 8 26 26 C 1.53954 * 86.78612 * 100.82025 * 25 24 9 27 27 C 1.52905 * 121.13706 * 259.18595 * 24 9 8 28 28 H 4.44646 * 5.63314 * 179.97438 * 4 1 2 29 29 H 1.09002 * 109.47018 * 241.69148 * 3 2 1 30 30 H 1.08998 * 109.46895 * 121.69992 * 3 2 1 31 31 H 1.09002 * 109.47153 * 59.99856 * 4 3 2 32 32 H 1.09001 * 109.46832 * 300.00046 * 4 3 2 33 33 H 1.00902 * 111.00582 * 303.95797 * 5 4 3 34 34 H 1.08999 * 113.58114 * 253.80716 * 8 6 5 35 35 H 1.08994 * 113.58038 * 24.60539 * 8 6 5 36 36 H 0.96998 * 120.00491 * 287.81589 * 11 9 8 37 37 H 1.08998 * 109.47212 * 300.00318 * 14 12 11 38 38 H 1.08999 * 109.47131 * 59.99779 * 14 12 11 39 39 H 0.97011 * 120.00146 * 179.97438 * 19 18 16 40 40 H 1.09006 * 113.66577 * 215.29009 * 25 24 9 41 41 H 1.09003 * 113.66757 * 346.34735 * 25 24 9 42 42 H 1.08997 * 113.57907 * 270.13234 * 26 25 24 43 43 H 1.08995 * 113.65169 * 139.34441 * 26 25 24 44 44 H 1.09001 * 113.66379 * 13.64856 * 27 24 9 45 45 H 1.09003 * 113.66601 * 144.70674 * 27 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1567 -1.4409 -0.0426 5 7 4.6257 -1.4402 -0.0433 6 6 5.1529 -2.8108 -0.0832 7 1 4.4466 -3.5479 0.2988 8 6 5.7766 -3.1935 -1.4376 9 6 6.8896 -3.9004 -0.6427 10 1 7.8858 -3.7538 -1.0600 11 7 6.5969 -5.3040 -0.3423 12 6 7.2613 -6.2838 -0.9865 13 8 8.1018 -6.0034 -1.8146 14 6 6.9607 -7.7277 -0.6771 15 16 8.0088 -8.7942 -1.6969 16 6 7.4629 -10.3765 -1.1462 17 1 6.6949 -10.4499 -0.3906 18 6 8.0208 -11.5285 -1.6829 19 7 7.6134 -12.7105 -1.2712 20 14 9.3498 -11.4016 -2.9895 21 1 10.6831 -11.3583 -2.3368 22 1 9.2761 -12.5824 -3.8869 23 1 9.1469 -10.1631 -3.7833 24 6 6.5581 -2.9452 0.5045 25 6 6.7697 -3.3565 1.9618 26 6 8.0667 -2.5283 1.9167 27 6 7.4203 -1.7133 0.7817 28 1 -1.0497 -0.0005 0.0002 29 1 3.0091 0.4882 0.9048 30 1 3.0090 0.5408 -0.8743 31 1 2.7936 -1.9284 -0.9474 32 1 2.7937 -1.9810 0.8318 33 1 4.9868 -0.8911 -0.8089 34 1 5.1604 -3.8745 -2.0247 35 1 6.1284 -2.3374 -2.0132 36 1 5.9249 -5.5283 0.3203 37 1 7.1605 -7.9227 0.3765 38 1 5.9124 -7.9347 -0.8924 39 1 8.0030 -13.5157 -1.6466 40 1 6.0185 -2.9562 2.6429 41 1 6.9375 -4.4252 2.0950 42 1 8.9387 -3.1007 1.6006 43 1 8.2469 -1.9484 2.8219 44 1 8.1080 -1.4693 -0.0280 45 1 6.8521 -0.8511 1.1310 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202512021.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:08 Heat of formation + Delta-G solvation = 33.678644 kcal Electronic energy + Delta-G solvation = -24104.801803 eV Core-core repulsion = 20636.213407 eV Total energy + Delta-G solvation = -3468.588396 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.08055 -40.09793 -37.39594 -36.10015 -34.72921 -34.66415 -33.15396 -30.87021 -29.54060 -27.86623 -26.67190 -25.55943 -24.92177 -23.29653 -22.27870 -21.43849 -20.04697 -19.31416 -18.79961 -17.98044 -17.18353 -16.99188 -16.85794 -16.65386 -16.30613 -16.19816 -15.87471 -15.55765 -15.00577 -14.79568 -14.46107 -14.29424 -14.06935 -13.97178 -13.49056 -13.36048 -13.22954 -13.16427 -13.01926 -12.81628 -12.77061 -12.66225 -12.46933 -11.92377 -11.87911 -11.32775 -11.26210 -11.18109 -11.08600 -10.98259 -10.92434 -10.82669 -10.55118 -10.04859 -9.27372 -9.00794 -8.52440 -6.23329 0.96961 1.30638 1.45473 1.51958 1.54153 1.85840 1.92934 2.14983 2.24449 2.69765 2.85704 3.07446 3.37755 3.57911 3.66931 3.73827 3.84178 3.89543 3.97269 4.04402 4.19456 4.21551 4.35655 4.44250 4.44931 4.57757 4.61084 4.62224 4.77608 4.89734 4.92690 5.00194 5.04494 5.08113 5.09558 5.15188 5.19691 5.22027 5.49933 5.54700 5.63727 5.69845 6.06072 6.10606 6.42797 6.49148 6.72235 6.92637 7.16540 8.59878 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017763 B = 0.002386 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.906334 B =11730.972468 C =12574.823151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.215 4.215 3 C -0.007 4.007 4 C 0.070 3.930 5 N -0.667 5.667 6 C 0.094 3.906 7 H 0.098 0.902 8 C -0.172 4.172 9 C 0.137 3.863 10 H 0.081 0.919 11 N -0.692 5.692 12 C 0.539 3.461 13 O -0.561 6.561 14 C -0.111 4.111 15 S -0.174 6.174 16 C -0.529 4.529 17 H 0.062 0.938 18 C 0.045 3.955 19 N -0.916 5.916 20 Si 0.915 3.085 21 H -0.262 1.262 22 H -0.259 1.259 23 H -0.237 1.237 24 C -0.092 4.092 25 C -0.123 4.123 26 C -0.145 4.145 27 C -0.091 4.091 28 H 0.239 0.761 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.028 0.972 32 H 0.070 0.930 33 H 0.352 0.648 34 H 0.061 0.939 35 H 0.103 0.897 36 H 0.414 0.586 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.277 0.723 40 H 0.095 0.905 41 H 0.059 0.941 42 H 0.062 0.938 43 H 0.076 0.924 44 H 0.063 0.937 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.470 29.331 5.815 31.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.216 4.216 3 C -0.044 4.044 4 C -0.059 4.059 5 N -0.297 5.297 6 C -0.017 4.017 7 H 0.116 0.884 8 C -0.213 4.213 9 C 0.030 3.970 10 H 0.099 0.901 11 N -0.345 5.345 12 C 0.325 3.675 13 O -0.439 6.439 14 C -0.262 4.262 15 S 0.052 5.948 16 C -0.676 4.676 17 H 0.081 0.919 18 C -0.161 4.161 19 N -0.554 5.554 20 Si 0.737 3.263 21 H -0.187 1.187 22 H -0.183 1.183 23 H -0.161 1.161 24 C -0.094 4.094 25 C -0.160 4.160 26 C -0.182 4.182 27 C -0.129 4.129 28 H 0.255 0.745 29 H 0.119 0.881 30 H 0.114 0.886 31 H 0.046 0.954 32 H 0.088 0.912 33 H 0.172 0.828 34 H 0.080 0.920 35 H 0.121 0.879 36 H 0.251 0.749 37 H 0.131 0.869 38 H 0.131 0.869 39 H 0.086 0.914 40 H 0.114 0.886 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.094 0.906 44 H 0.082 0.918 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -8.037 29.663 5.133 31.158 hybrid contribution -1.198 -1.587 -0.136 1.993 sum -9.235 28.075 4.998 29.975 Atomic orbital electron populations 1.25692 0.97045 0.99690 1.00775 1.23628 0.95529 1.01462 1.00956 1.18673 0.83611 0.97460 1.04659 1.21816 0.87736 0.95767 1.00625 1.60281 1.06485 1.11603 1.51326 1.22740 0.94680 0.90349 0.93904 0.88373 1.24127 0.98047 1.01117 0.97977 1.21494 0.99108 0.79422 0.96926 0.90096 1.45330 1.41674 1.04613 1.42837 1.19939 0.80366 0.86822 0.80345 1.90687 1.34393 1.84130 1.34642 1.23264 1.04681 0.93500 1.04792 1.84711 1.54401 1.00356 1.55285 1.22456 1.26492 0.91230 1.27464 0.91936 1.25573 0.98365 0.93975 0.98170 1.70017 1.43517 0.98175 1.43709 0.85863 0.79876 0.80314 0.80290 1.18681 1.18318 1.16104 1.22917 0.95617 0.97028 0.93823 1.22674 0.98243 0.99814 0.95307 1.22827 0.96800 0.98905 0.99703 1.22453 0.96912 0.95728 0.97821 0.74489 0.88135 0.88600 0.95409 0.91154 0.82827 0.92028 0.87875 0.74888 0.86868 0.86851 0.91361 0.88611 0.92270 0.91937 0.90570 0.91823 0.87259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.79 19.25 74.32 1.43 -1.36 16 2 C -0.22 -3.08 13.34 31.13 0.42 -2.66 16 3 C -0.01 -0.07 5.96 28.79 0.17 0.10 16 4 C 0.07 0.76 5.48 86.30 0.47 1.23 16 5 N -0.67 -6.71 5.82 -490.06 -2.85 -9.57 16 6 C 0.09 1.22 3.98 45.21 0.18 1.40 16 7 H 0.10 1.31 7.87 -2.39 -0.02 1.29 16 8 C -0.17 -2.84 7.50 31.23 0.23 -2.61 16 9 C 0.14 2.84 4.12 45.29 0.19 3.02 16 10 H 0.08 2.12 7.47 -2.39 -0.02 2.10 16 11 N -0.69 -16.27 4.80 -441.16 -2.12 -18.39 16 12 C 0.54 18.37 7.85 87.65 0.69 19.06 16 13 O -0.56 -23.85 15.46 -3.02 -0.05 -23.90 16 14 C -0.11 -4.17 6.16 71.23 0.44 -3.73 16 15 S -0.17 -8.79 18.55 -56.49 -1.05 -9.84 16 16 C -0.53 -30.79 10.04 67.95 0.68 -30.11 16 17 H 0.06 3.83 8.03 -2.91 -0.02 3.81 16 18 C 0.04 2.62 5.50 84.86 0.47 3.09 16 19 N -0.92 -55.84 13.97 21.65 0.30 -55.53 16 20 Si 0.91 45.10 27.74 68.60 1.90 47.00 16 21 H -0.26 -12.61 7.11 99.48 0.71 -11.91 16 22 H -0.26 -11.96 7.11 99.48 0.71 -11.26 16 23 H -0.24 -11.68 6.74 99.48 0.67 -11.01 16 24 C -0.09 -1.35 0.92 -52.32 -0.05 -1.40 16 25 C -0.12 -1.82 7.62 30.88 0.24 -1.59 16 26 C -0.14 -2.19 8.08 31.23 0.25 -1.94 16 27 C -0.09 -1.20 7.44 30.88 0.23 -0.97 16 28 H 0.24 1.51 7.80 -4.43 -0.03 1.47 16 29 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.03 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.07 0.87 8.13 -2.39 -0.02 0.85 16 33 H 0.35 2.88 8.19 -89.69 -0.73 2.15 16 34 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.10 1.45 7.82 -2.39 -0.02 1.44 16 36 H 0.41 7.43 8.42 -92.71 -0.78 6.65 16 37 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 38 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 39 H 0.28 15.60 8.31 -92.70 -0.77 14.83 16 40 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 41 H 0.06 0.99 7.58 -2.39 -0.02 0.98 16 42 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.11 1.23 7.77 -2.39 -0.02 1.21 16 Total: -1.00 -72.68 389.35 1.61 -71.07 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -0.57 Total: 17.61 kcal Atomic # 6 Polarization: -24.50 SS G_CDS: 6.04 Total: -18.46 kcal Atomic # 7 Polarization: -78.82 SS G_CDS: -4.67 Total: -83.49 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: -0.05 Total: -23.90 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.90 Total: 47.00 kcal Atomic # 16 Polarization: -8.79 SS G_CDS: -1.05 Total: -9.84 kcal Total: -72.68 1.61 -71.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202512021.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.752 kcal (2) G-P(sol) polarization free energy of solvation -72.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds