Wall clock time and date at job start Tue Mar 31 2020 14:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47201 * 1 3 3 C 1.17396 * 179.97438 * 2 1 4 4 C 1.47201 * 179.97438 * 120.10133 * 3 2 1 5 5 N 1.46910 * 109.46838 * 216.32485 * 4 3 2 6 6 C 1.46899 * 110.99824 * 180.02562 * 5 4 3 7 7 H 1.09002 * 112.88710 * 25.33047 * 6 5 4 8 8 C 1.53952 * 113.66219 * 253.98461 * 6 5 4 9 9 C 1.54247 * 87.19136 * 220.75464 * 8 6 5 10 10 H 1.09004 * 113.74390 * 270.25239 * 9 8 6 11 11 N 1.46495 * 113.66910 * 139.20320 * 9 8 6 12 12 C 1.34780 * 120.00106 * 107.81390 * 11 9 8 13 13 O 1.21277 * 119.99817 * 0.02562 * 12 11 9 14 14 C 1.50706 * 119.99795 * 180.02562 * 12 11 9 15 15 S 1.80995 * 109.46818 * 180.02562 * 14 12 11 16 16 C 1.76196 * 100.00114 * 179.97438 * 15 14 12 17 17 H 1.08001 * 120.00096 * 0.02562 * 16 15 14 18 18 C 1.38797 * 120.00177 * 179.97438 * 16 15 14 19 19 N 1.31628 * 119.99959 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 119.99938 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47058 * 90.00345 * 20 18 16 22 22 H 1.48507 * 109.47101 * 209.99801 * 20 18 16 23 23 H 1.48495 * 109.46914 * 330.00041 * 20 18 16 24 24 C 1.52907 * 86.77858 * 24.73120 * 9 8 6 25 25 C 1.52916 * 121.13615 * 100.82380 * 24 9 8 26 26 C 1.53950 * 86.78251 * 100.82129 * 25 24 9 27 27 C 1.52914 * 121.13836 * 209.38392 * 24 9 8 28 28 H 1.09000 * 109.46734 * 203.57276 * 1 2 3 29 29 H 1.09001 * 109.47317 * 323.57224 * 1 2 3 30 30 H 1.09003 * 109.46940 * 83.57570 * 1 2 3 31 31 H 1.09001 * 109.47098 * 96.32756 * 4 3 2 32 32 H 1.08996 * 109.47956 * 336.32112 * 4 3 2 33 33 H 1.00904 * 110.99736 * 303.95115 * 5 4 3 34 34 H 1.09005 * 113.57551 * 335.30572 * 8 6 5 35 35 H 1.09001 * 113.58133 * 106.09850 * 8 6 5 36 36 H 0.97010 * 119.99907 * 287.81771 * 11 9 8 37 37 H 1.08994 * 109.46931 * 299.99951 * 14 12 11 38 38 H 1.08996 * 109.47067 * 60.00419 * 14 12 11 39 39 H 0.97008 * 120.00422 * 179.97438 * 19 18 16 40 40 H 1.08997 * 113.65977 * 215.29117 * 25 24 9 41 41 H 1.09000 * 113.66072 * 346.34954 * 25 24 9 42 42 H 1.09002 * 113.57610 * 270.13352 * 26 25 24 43 43 H 1.08999 * 113.65085 * 139.34488 * 26 25 24 44 44 H 1.08998 * 113.65609 * 13.65313 * 27 24 9 45 45 H 1.08996 * 113.66004 * 144.61644 * 27 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0015 -0.0006 5 7 4.6072 1.1178 0.8197 6 6 6.0756 1.1507 0.8419 7 1 6.5234 0.6839 -0.0354 8 6 6.6843 0.6748 2.1735 9 6 7.6995 1.8277 2.0341 10 1 8.6044 1.5526 1.4922 11 7 7.9785 2.5212 3.2940 12 6 9.1655 2.3499 3.9090 13 8 10.0028 1.6219 3.4191 14 6 9.4523 3.0629 5.2054 15 16 11.1152 2.6323 5.7756 16 6 11.1833 3.5767 7.2615 17 1 10.3378 4.1802 7.5570 18 6 12.3231 3.5443 8.0528 19 7 12.3738 4.2495 9.1631 20 14 13.7854 2.5000 7.5421 21 1 14.6984 3.3077 6.6942 22 1 14.5119 2.0397 8.7528 23 1 13.3082 1.3224 6.7736 24 6 6.6538 2.5287 1.1663 25 6 5.7727 3.6421 1.7341 26 6 6.7215 4.6315 1.0335 27 6 7.0671 3.4943 0.0550 28 1 -0.3633 -0.9419 0.4110 29 1 -0.3634 0.8269 0.6102 30 1 -0.3633 0.1150 -1.0212 31 1 4.4808 0.1150 -1.0221 32 1 4.4822 -0.9393 0.4120 33 1 4.2309 1.9963 0.4961 34 1 6.0123 0.7862 3.0245 35 1 7.1363 -0.3155 2.1171 36 1 7.3089 3.1037 3.6856 37 1 9.3896 4.1398 5.0493 38 1 8.7212 2.7612 5.9554 39 1 13.1702 4.2266 9.7164 40 1 4.7600 3.6471 1.3310 41 1 5.7976 3.7078 2.8218 42 1 7.5618 4.9433 1.6538 43 1 6.2087 5.4706 0.5632 44 1 8.1259 3.4419 -0.1986 45 1 6.4191 3.4566 -0.8206 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202522915.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:17 Heat of formation + Delta-G solvation = 52.986694 kcal Electronic energy + Delta-G solvation = -23961.574926 eV Core-core repulsion = 20493.823790 eV Total energy + Delta-G solvation = -3467.751136 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.30901 -38.76296 -36.49612 -35.03179 -33.94088 -32.52599 -32.41950 -29.59331 -28.80489 -26.20126 -25.73093 -25.55816 -24.72048 -23.13982 -21.10215 -20.39490 -18.69921 -17.80210 -17.39966 -16.61284 -16.46641 -16.04485 -15.57052 -15.20164 -14.99287 -14.91511 -14.59441 -14.29684 -13.90982 -13.83032 -13.76700 -13.33917 -13.15108 -12.89675 -12.80836 -12.77164 -12.45411 -12.21116 -11.89778 -11.75322 -11.41437 -11.25420 -11.00028 -10.79852 -10.58709 -10.52695 -10.35166 -10.16618 -10.07172 -9.84203 -9.47879 -9.00022 -8.92711 -8.77055 -8.48727 -6.90336 -6.27830 -3.99357 2.25728 2.38968 2.78264 2.96710 3.30583 3.34607 3.51465 3.62465 3.79785 4.00804 4.04165 4.27421 4.34183 4.34790 4.44753 4.57582 4.70587 4.74920 4.93553 5.03332 5.08553 5.11264 5.14311 5.18441 5.20532 5.27134 5.28309 5.37726 5.39668 5.49643 5.52138 5.65653 5.68441 5.72287 5.78245 5.85075 6.02124 6.04585 6.07951 6.14153 6.61525 6.65419 6.91579 7.31375 7.65483 7.95205 8.42862 8.51590 9.18401 10.81385 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.023454 B = 0.002202 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.543147 B =12713.833172 C =12939.194120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 C -0.181 4.181 3 C -0.187 4.187 4 C 0.172 3.828 5 N -0.668 5.668 6 C 0.072 3.928 7 H 0.080 0.920 8 C -0.135 4.135 9 C 0.153 3.847 10 H 0.117 0.883 11 N -0.722 5.722 12 C 0.532 3.468 13 O -0.520 6.520 14 C -0.125 4.125 15 S -0.141 6.141 16 C -0.521 4.521 17 H 0.088 0.912 18 C 0.095 3.905 19 N -0.880 5.880 20 Si 0.857 3.143 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.235 1.235 24 C -0.112 4.112 25 C -0.108 4.108 26 C -0.140 4.140 27 C -0.130 4.130 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.053 0.947 32 H 0.096 0.904 33 H 0.344 0.656 34 H 0.094 0.906 35 H 0.071 0.929 36 H 0.399 0.601 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.270 0.730 40 H 0.087 0.913 41 H 0.071 0.929 42 H 0.084 0.916 43 H 0.067 0.933 44 H 0.072 0.928 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.483 -4.334 -21.387 30.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.182 4.182 3 C -0.187 4.187 4 C 0.044 3.956 5 N -0.300 5.300 6 C -0.038 4.038 7 H 0.098 0.902 8 C -0.175 4.175 9 C 0.046 3.954 10 H 0.135 0.865 11 N -0.376 5.376 12 C 0.319 3.681 13 O -0.395 6.395 14 C -0.275 4.275 15 S 0.085 5.915 16 C -0.669 4.669 17 H 0.106 0.894 18 C -0.113 4.113 19 N -0.517 5.517 20 Si 0.682 3.318 21 H -0.192 1.192 22 H -0.200 1.200 23 H -0.159 1.159 24 C -0.113 4.113 25 C -0.145 4.145 26 C -0.177 4.177 27 C -0.167 4.167 28 H 0.098 0.902 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.071 0.929 32 H 0.114 0.886 33 H 0.164 0.836 34 H 0.112 0.888 35 H 0.090 0.910 36 H 0.235 0.765 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.080 0.920 40 H 0.105 0.895 41 H 0.089 0.911 42 H 0.102 0.898 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -20.009 -5.833 -21.440 29.901 hybrid contribution -0.456 1.130 -0.071 1.220 sum -20.466 -4.703 -21.511 30.061 Atomic orbital electron populations 1.18871 0.84655 1.03208 1.02947 1.22440 0.93928 1.00309 1.01534 1.22134 0.93378 1.02078 1.01113 1.18855 0.84196 0.96534 0.95987 1.60598 1.07151 1.06467 1.55746 1.22675 0.86535 0.96508 0.98055 0.90223 1.23592 0.97470 0.98660 0.97728 1.21984 0.96576 0.91923 0.84868 0.86519 1.45899 1.17463 1.49952 1.24240 1.20305 0.81110 0.81135 0.85596 1.90688 1.45719 1.37413 1.65664 1.23286 1.04351 1.03295 0.96609 1.84774 1.13496 1.63908 1.29340 1.22324 1.06044 1.31867 1.06661 0.89397 1.24713 0.98042 0.94717 0.93844 1.69940 1.29424 1.39486 1.12854 0.86734 0.83087 0.82731 0.79291 1.19237 1.19955 1.15915 1.23217 0.97426 0.92892 0.97805 1.22466 0.97774 0.93801 1.00483 1.22849 0.99781 0.96546 0.98518 1.22783 1.01830 0.95754 0.96347 0.90155 0.90008 0.90327 0.92912 0.88637 0.83604 0.88761 0.90995 0.76484 0.88573 0.88473 0.91961 0.89506 0.91064 0.89756 0.91415 0.90957 0.90185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.21 10.32 34.37 0.35 0.15 16 2 C -0.18 -1.58 14.13 -37.12 -0.52 -2.11 16 3 C -0.19 -1.73 13.60 -37.12 -0.50 -2.23 16 4 C 0.17 1.31 6.02 -6.61 -0.04 1.27 16 5 N -0.67 -5.23 6.28 -109.32 -0.69 -5.92 16 6 C 0.07 0.58 4.00 -67.26 -0.27 0.31 16 7 H 0.08 0.59 7.88 -51.93 -0.41 0.18 16 8 C -0.13 -1.35 7.71 -25.59 -0.20 -1.55 16 9 C 0.15 1.69 4.13 -67.33 -0.28 1.41 16 10 H 0.12 1.49 7.46 -51.93 -0.39 1.11 16 11 N -0.72 -9.11 5.28 -53.22 -0.28 -9.39 16 12 C 0.53 9.34 7.85 -10.98 -0.09 9.26 16 13 O -0.52 -11.08 15.46 5.56 0.09 -10.99 16 14 C -0.12 -2.41 6.16 36.01 0.22 -2.19 16 15 S -0.14 -3.59 18.55 -107.50 -1.99 -5.59 16 16 C -0.52 -15.07 10.04 30.94 0.31 -14.76 16 17 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 18 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 19 N -0.88 -26.64 13.97 55.49 0.78 -25.86 16 20 Si 0.86 21.87 27.74 -169.99 -4.72 17.15 16 21 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.24 -6.00 6.74 56.52 0.38 -5.62 16 24 C -0.11 -0.91 0.99 -154.70 -0.15 -1.07 16 25 C -0.11 -0.80 7.00 -26.28 -0.18 -0.99 16 26 C -0.14 -1.09 8.08 -25.75 -0.21 -1.29 16 27 C -0.13 -1.00 7.84 -26.28 -0.21 -1.20 16 28 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.05 0.33 8.13 -51.93 -0.42 -0.09 16 32 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.34 2.50 6.94 -39.29 -0.27 2.22 16 34 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.40 4.16 6.72 -40.82 -0.27 3.89 16 37 H 0.10 1.72 8.14 -51.92 -0.42 1.30 16 38 H 0.10 1.76 8.14 -51.92 -0.42 1.34 16 39 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 40 H 0.09 0.58 6.71 -51.93 -0.35 0.23 16 41 H 0.07 0.55 6.42 -51.93 -0.33 0.22 16 42 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 385.91 15.07 5.82 5.82 Total: -1.00 -33.95 385.91 -9.96 -43.91 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -7.10 Total: 3.17 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: -1.86 Total: -12.29 kcal Atomic # 7 Polarization: -40.98 SS G_CDS: -0.19 Total: -41.17 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.09 Total: -10.99 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.72 Total: 17.15 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -1.99 Total: -5.59 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.95 -9.96 -43.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202522915.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.892 kcal (2) G-P(sol) polarization free energy of solvation -33.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds