Wall clock time and date at job start Tue Mar 31 2020 14:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47201 * 1 3 3 C 1.17396 * 179.97438 * 2 1 4 4 C 1.47201 * 179.97438 * 120.10133 * 3 2 1 5 5 N 1.46910 * 109.46838 * 216.32485 * 4 3 2 6 6 C 1.46899 * 110.99824 * 180.02562 * 5 4 3 7 7 H 1.09002 * 112.88710 * 25.33047 * 6 5 4 8 8 C 1.53952 * 113.66219 * 253.98461 * 6 5 4 9 9 C 1.54247 * 87.19136 * 220.75464 * 8 6 5 10 10 H 1.09004 * 113.74390 * 270.25239 * 9 8 6 11 11 N 1.46495 * 113.66910 * 139.20320 * 9 8 6 12 12 C 1.34780 * 120.00106 * 107.81390 * 11 9 8 13 13 O 1.21277 * 119.99817 * 0.02562 * 12 11 9 14 14 C 1.50706 * 119.99795 * 180.02562 * 12 11 9 15 15 S 1.80995 * 109.46818 * 180.02562 * 14 12 11 16 16 C 1.76196 * 100.00114 * 179.97438 * 15 14 12 17 17 H 1.08001 * 120.00096 * 0.02562 * 16 15 14 18 18 C 1.38797 * 120.00177 * 179.97438 * 16 15 14 19 19 N 1.31628 * 119.99959 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 119.99938 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47058 * 90.00345 * 20 18 16 22 22 H 1.48507 * 109.47101 * 209.99801 * 20 18 16 23 23 H 1.48495 * 109.46914 * 330.00041 * 20 18 16 24 24 C 1.52907 * 86.77858 * 24.73120 * 9 8 6 25 25 C 1.52916 * 121.13615 * 100.82380 * 24 9 8 26 26 C 1.53950 * 86.78251 * 100.82129 * 25 24 9 27 27 C 1.52914 * 121.13836 * 209.38392 * 24 9 8 28 28 H 1.09000 * 109.46734 * 203.57276 * 1 2 3 29 29 H 1.09001 * 109.47317 * 323.57224 * 1 2 3 30 30 H 1.09003 * 109.46940 * 83.57570 * 1 2 3 31 31 H 1.09001 * 109.47098 * 96.32756 * 4 3 2 32 32 H 1.08996 * 109.47956 * 336.32112 * 4 3 2 33 33 H 1.00904 * 110.99736 * 303.95115 * 5 4 3 34 34 H 1.09005 * 113.57551 * 335.30572 * 8 6 5 35 35 H 1.09001 * 113.58133 * 106.09850 * 8 6 5 36 36 H 0.97010 * 119.99907 * 287.81771 * 11 9 8 37 37 H 1.08994 * 109.46931 * 299.99951 * 14 12 11 38 38 H 1.08996 * 109.47067 * 60.00419 * 14 12 11 39 39 H 0.97008 * 120.00422 * 179.97438 * 19 18 16 40 40 H 1.08997 * 113.65977 * 215.29117 * 25 24 9 41 41 H 1.09000 * 113.66072 * 346.34954 * 25 24 9 42 42 H 1.09002 * 113.57610 * 270.13352 * 26 25 24 43 43 H 1.08999 * 113.65085 * 139.34488 * 26 25 24 44 44 H 1.08998 * 113.65609 * 13.65313 * 27 24 9 45 45 H 1.08996 * 113.66004 * 144.61644 * 27 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0015 -0.0006 5 7 4.6072 1.1178 0.8197 6 6 6.0756 1.1507 0.8419 7 1 6.5234 0.6839 -0.0354 8 6 6.6843 0.6748 2.1735 9 6 7.6995 1.8277 2.0341 10 1 8.6044 1.5526 1.4922 11 7 7.9785 2.5212 3.2940 12 6 9.1655 2.3499 3.9090 13 8 10.0028 1.6219 3.4191 14 6 9.4523 3.0629 5.2054 15 16 11.1152 2.6323 5.7756 16 6 11.1833 3.5767 7.2615 17 1 10.3378 4.1802 7.5570 18 6 12.3231 3.5443 8.0528 19 7 12.3738 4.2495 9.1631 20 14 13.7854 2.5000 7.5421 21 1 14.6984 3.3077 6.6942 22 1 14.5119 2.0397 8.7528 23 1 13.3082 1.3224 6.7736 24 6 6.6538 2.5287 1.1663 25 6 5.7727 3.6421 1.7341 26 6 6.7215 4.6315 1.0335 27 6 7.0671 3.4943 0.0550 28 1 -0.3633 -0.9419 0.4110 29 1 -0.3634 0.8269 0.6102 30 1 -0.3633 0.1150 -1.0212 31 1 4.4808 0.1150 -1.0221 32 1 4.4822 -0.9393 0.4120 33 1 4.2309 1.9963 0.4961 34 1 6.0123 0.7862 3.0245 35 1 7.1363 -0.3155 2.1171 36 1 7.3089 3.1037 3.6856 37 1 9.3896 4.1398 5.0493 38 1 8.7212 2.7612 5.9554 39 1 13.1702 4.2266 9.7164 40 1 4.7600 3.6471 1.3310 41 1 5.7976 3.7078 2.8218 42 1 7.5618 4.9433 1.6538 43 1 6.2087 5.4706 0.5632 44 1 8.1259 3.4419 -0.1986 45 1 6.4191 3.4566 -0.8206 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202522915.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:16 Heat of formation + Delta-G solvation = 30.848546 kcal Electronic energy + Delta-G solvation = -23962.534909 eV Core-core repulsion = 20493.823790 eV Total energy + Delta-G solvation = -3468.711118 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.12175 -40.09900 -37.10877 -35.88093 -34.77206 -34.66537 -33.41996 -30.84422 -29.55634 -27.86292 -26.81625 -26.32707 -25.45043 -24.00348 -21.80360 -21.68684 -20.06438 -19.18645 -18.21119 -17.74783 -17.55338 -17.09160 -16.71651 -16.38514 -16.28941 -15.89840 -15.79578 -15.39705 -14.93666 -14.79994 -14.54476 -14.33025 -14.23192 -13.94458 -13.83804 -13.49136 -13.36904 -13.31581 -13.04449 -12.95827 -12.91750 -12.71021 -12.39642 -12.21318 -11.87152 -11.42592 -11.23999 -11.17214 -11.05575 -10.94213 -10.74556 -10.68699 -10.53851 -9.99250 -9.42127 -8.99456 -8.51548 -6.22307 0.98787 1.31203 1.46657 1.55220 1.55264 1.64448 1.77482 2.22221 2.26551 2.71484 2.86621 3.16922 3.30190 3.37723 3.56857 3.68707 3.78618 3.85880 3.88872 3.95972 4.22968 4.37383 4.45200 4.46635 4.50640 4.52595 4.58639 4.72327 4.79880 4.83225 4.84127 4.86555 4.95768 5.01720 5.04772 5.09965 5.10177 5.19299 5.36462 5.50043 5.57540 5.70656 6.01049 6.11336 6.35568 6.47737 6.71176 6.93563 7.19233 8.60821 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.023454 B = 0.002202 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.543147 B =12713.833172 C =12939.194120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 C -0.191 4.191 3 C -0.217 4.217 4 C 0.173 3.827 5 N -0.671 5.671 6 C 0.087 3.913 7 H 0.090 0.910 8 C -0.134 4.134 9 C 0.141 3.859 10 H 0.099 0.901 11 N -0.698 5.698 12 C 0.537 3.463 13 O -0.562 6.562 14 C -0.113 4.113 15 S -0.173 6.173 16 C -0.530 4.530 17 H 0.062 0.938 18 C 0.046 3.954 19 N -0.916 5.916 20 Si 0.915 3.085 21 H -0.262 1.262 22 H -0.259 1.259 23 H -0.237 1.237 24 C -0.102 4.102 25 C -0.103 4.103 26 C -0.141 4.141 27 C -0.126 4.126 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.349 0.651 34 H 0.089 0.911 35 H 0.065 0.935 36 H 0.413 0.587 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.277 0.723 40 H 0.102 0.898 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.080 0.920 44 H 0.061 0.939 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.163 -4.550 -23.167 33.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.193 4.193 3 C -0.217 4.217 4 C 0.046 3.954 5 N -0.304 5.304 6 C -0.023 4.023 7 H 0.108 0.892 8 C -0.174 4.174 9 C 0.035 3.965 10 H 0.117 0.883 11 N -0.351 5.351 12 C 0.323 3.677 13 O -0.440 6.440 14 C -0.263 4.263 15 S 0.053 5.947 16 C -0.677 4.677 17 H 0.080 0.920 18 C -0.160 4.160 19 N -0.554 5.554 20 Si 0.737 3.263 21 H -0.187 1.187 22 H -0.183 1.183 23 H -0.161 1.161 24 C -0.103 4.103 25 C -0.141 4.141 26 C -0.178 4.178 27 C -0.163 4.163 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.112 0.888 31 H 0.085 0.915 32 H 0.112 0.888 33 H 0.170 0.830 34 H 0.107 0.893 35 H 0.084 0.916 36 H 0.251 0.749 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.086 0.914 40 H 0.120 0.880 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.098 0.902 44 H 0.079 0.921 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -21.747 -6.028 -23.230 32.386 hybrid contribution -0.128 1.234 0.432 1.313 sum -21.875 -4.794 -22.798 31.957 Atomic orbital electron populations 1.19085 0.82604 1.04155 1.04218 1.23353 0.95218 0.99698 1.01004 1.22632 0.94246 1.02929 1.01939 1.18885 0.83586 0.96271 0.96699 1.60512 1.06738 1.06897 1.56219 1.22512 0.86823 0.95847 0.97145 0.89192 1.23556 0.97053 0.97852 0.98949 1.22157 0.96812 0.93319 0.84215 0.88274 1.45695 1.15913 1.49195 1.24277 1.19956 0.82089 0.80626 0.85007 1.90678 1.47364 1.39390 1.66582 1.23280 1.00492 1.04589 0.97982 1.84686 1.18652 1.63642 1.27712 1.22470 1.05325 1.31794 1.08158 0.91996 1.25564 1.00680 0.95857 0.93881 1.70017 1.30605 1.40892 1.13930 0.85864 0.79930 0.81107 0.79447 1.18670 1.18312 1.16105 1.23085 0.96338 0.93362 0.97544 1.22506 0.98320 0.92863 1.00405 1.22829 0.99417 0.97117 0.98433 1.22810 1.01597 0.95163 0.96743 0.89128 0.88991 0.88825 0.91463 0.88809 0.82959 0.89289 0.91632 0.74906 0.86956 0.87026 0.91371 0.87973 0.91277 0.91334 0.90168 0.92065 0.88289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.36 10.32 70.18 0.72 0.36 16 2 C -0.19 -3.06 14.13 31.13 0.44 -2.62 16 3 C -0.22 -3.72 13.60 31.13 0.42 -3.29 16 4 C 0.17 2.33 6.02 84.50 0.51 2.84 16 5 N -0.67 -9.07 6.28 -499.78 -3.14 -12.20 16 6 C 0.09 1.21 4.00 45.21 0.18 1.39 16 7 H 0.09 1.12 7.88 -2.39 -0.02 1.10 16 8 C -0.13 -2.54 7.71 31.34 0.24 -2.30 16 9 C 0.14 2.97 4.13 45.38 0.19 3.15 16 10 H 0.10 2.52 7.46 -2.39 -0.02 2.51 16 11 N -0.70 -16.84 5.28 -440.67 -2.33 -19.17 16 12 C 0.54 18.56 7.85 87.66 0.69 19.25 16 13 O -0.56 -23.99 15.46 -3.02 -0.05 -24.04 16 14 C -0.11 -4.28 6.16 71.24 0.44 -3.84 16 15 S -0.17 -8.83 18.55 -56.49 -1.05 -9.87 16 16 C -0.53 -31.07 10.04 67.95 0.68 -30.38 16 17 H 0.06 3.83 8.03 -2.91 -0.02 3.80 16 18 C 0.05 2.69 5.50 84.86 0.47 3.16 16 19 N -0.92 -56.06 13.97 21.65 0.30 -55.76 16 20 Si 0.91 45.28 27.74 68.60 1.90 47.18 16 21 H -0.26 -12.64 7.11 99.48 0.71 -11.93 16 22 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 23 H -0.24 -11.74 6.74 99.48 0.67 -11.07 16 24 C -0.10 -1.47 0.99 -52.31 -0.05 -1.52 16 25 C -0.10 -1.28 7.00 30.89 0.22 -1.07 16 26 C -0.14 -1.88 8.08 31.23 0.25 -1.63 16 27 C -0.13 -1.65 7.84 30.89 0.24 -1.41 16 28 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.07 0.70 8.13 -2.39 -0.02 0.68 16 32 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.35 4.12 6.94 -89.69 -0.62 3.50 16 34 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 35 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.41 7.88 6.72 -92.70 -0.62 7.26 16 37 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 38 H 0.11 3.93 8.14 -2.40 -0.02 3.91 16 39 H 0.28 15.65 8.31 -92.70 -0.77 14.88 16 40 H 0.10 1.02 6.71 -2.39 -0.02 1.00 16 41 H 0.07 0.90 6.42 -2.39 -0.02 0.89 16 42 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -73.89 385.91 1.01 -72.87 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: -0.28 Total: 18.90 kcal Atomic # 6 Polarization: -23.55 SS G_CDS: 5.64 Total: -17.91 kcal Atomic # 7 Polarization: -81.97 SS G_CDS: -5.16 Total: -87.13 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.05 Total: -24.04 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.90 Total: 47.18 kcal Atomic # 16 Polarization: -8.83 SS G_CDS: -1.05 Total: -9.87 kcal Total: -73.89 1.01 -72.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202522915.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.723 kcal (2) G-P(sol) polarization free energy of solvation -73.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds