Wall clock time and date at job start Tue Mar 31 2020 13:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.46945 * 2 1 4 4 C 1.37472 * 123.35337 * 265.02096 * 3 2 1 5 5 C 1.33818 * 115.09966 * 179.73283 * 4 3 2 6 6 S 1.70610 * 110.95588 * 0.02562 * 5 4 3 7 7 C 1.36649 * 123.35058 * 84.73515 * 3 2 1 8 8 C 1.46582 * 125.45628 * 0.23983 * 7 3 2 9 9 O 1.21706 * 120.00208 * 42.01876 * 8 7 3 10 10 N 1.34775 * 120.00357 * 222.01386 * 8 7 3 11 11 C 1.46926 * 120.63577 * 185.51140 * 10 8 7 12 12 C 1.52758 * 109.01062 * 233.58858 * 11 10 8 13 13 C 1.53041 * 109.38230 * 305.58580 * 12 11 10 14 14 C 1.53003 * 109.45604 * 181.26065 * 13 12 11 15 15 N 1.46503 * 109.47006 * 64.93613 * 14 13 12 16 16 C 1.36936 * 119.99596 * 179.97438 * 15 14 13 17 17 H 1.08003 * 120.00572 * 0.02562 * 16 15 14 18 18 C 1.38810 * 119.99850 * 179.97438 * 16 15 14 19 19 N 1.31622 * 119.99969 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00176 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47090 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47454 * 120.00010 * 20 18 16 23 23 H 1.48500 * 109.47127 * 239.99915 * 20 18 16 24 24 C 1.53043 * 109.53490 * 61.24193 * 13 12 11 25 25 C 1.46929 * 120.62796 * 5.79705 * 10 8 7 26 26 H 1.09002 * 109.47124 * 300.00136 * 1 2 3 27 27 H 1.09006 * 109.47148 * 59.99499 * 1 2 3 28 28 H 1.08998 * 109.47717 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46497 * 240.00283 * 2 1 3 30 30 H 1.08997 * 109.47170 * 120.00229 * 2 1 3 31 31 H 1.07998 * 122.45151 * 359.76285 * 4 3 2 32 32 H 1.08002 * 124.51747 * 179.97438 * 5 4 3 33 33 H 1.08997 * 109.58416 * 353.42408 * 11 10 8 34 34 H 1.09001 * 109.58492 * 113.84641 * 11 10 8 35 35 H 1.09001 * 109.56053 * 185.55379 * 12 11 10 36 36 H 1.08993 * 109.36144 * 65.49926 * 12 11 10 37 37 H 1.09000 * 109.45941 * 301.22235 * 13 12 11 38 38 H 1.09008 * 109.46779 * 184.93230 * 14 13 12 39 39 H 1.08999 * 109.47061 * 304.93251 * 14 13 12 40 40 H 0.96998 * 120.00233 * 359.97438 * 15 14 13 41 41 H 0.97001 * 119.99695 * 179.97438 * 19 18 16 42 42 H 1.09005 * 109.49209 * 178.68092 * 24 13 12 43 43 H 1.08999 * 109.52308 * 58.60180 * 24 13 12 44 44 H 1.08996 * 109.58722 * 246.15438 * 25 10 8 45 45 H 1.09001 * 109.58502 * 6.43894 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3782 2.1002 -1.1440 5 6 2.7985 3.3562 -0.9531 6 16 2.7827 3.7597 0.7045 7 6 2.1839 2.1640 1.1366 8 6 1.8938 1.7045 2.4980 9 8 2.2196 0.5843 2.8446 10 7 1.2663 2.5226 3.3660 11 6 1.0757 2.1233 4.7671 12 6 -0.4052 2.2439 5.1218 13 6 -0.8910 3.6590 4.7996 14 6 -2.3662 3.7911 5.1835 15 7 -2.5073 3.6524 6.6351 16 6 -3.7456 3.7365 7.2137 17 1 -4.6182 3.9046 6.6000 18 6 -3.8794 3.6046 8.5890 19 7 -2.8161 3.3982 9.3369 20 14 -5.5686 3.7185 9.3784 21 1 -6.5913 3.9522 8.3274 22 1 -5.8695 2.4499 10.0891 23 1 -5.5878 4.8446 10.3462 24 6 -0.7280 3.9273 3.3017 25 6 0.7542 3.8282 2.9277 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8932 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 2.3148 1.6531 -2.1250 32 1 3.1075 4.0249 -1.7429 33 1 1.3989 1.0909 4.8999 34 1 1.6585 2.7772 5.4159 35 1 -0.5432 2.0451 6.1846 36 1 -0.9764 1.5216 4.5389 37 1 -0.3028 4.3823 5.3643 38 1 -2.7359 4.7688 4.8743 39 1 -2.9424 3.0108 4.6862 40 1 -1.7237 3.5011 7.1863 41 1 -2.9096 3.3064 10.2980 42 1 -1.0959 4.9267 3.0691 43 1 -1.2963 3.1894 2.7355 44 1 1.3102 4.6239 3.4234 45 1 0.8677 3.9212 1.8476 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206946454.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:04 Heat of formation + Delta-G solvation = -3.335030 kcal Electronic energy + Delta-G solvation = -25200.637425 eV Core-core repulsion = 21730.443996 eV Total energy + Delta-G solvation = -3470.193429 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.38869 -38.64223 -37.40059 -34.96375 -33.01693 -32.86651 -31.34728 -30.52445 -29.31373 -26.79431 -25.49020 -23.85359 -23.20701 -22.59770 -21.98266 -20.87585 -19.68577 -18.48212 -18.14796 -17.04995 -16.37429 -16.04086 -15.30236 -15.13224 -14.77419 -14.36127 -14.27458 -14.00698 -13.81194 -13.70379 -13.47989 -13.39053 -13.14387 -12.88673 -12.54901 -12.44228 -12.21629 -11.98237 -11.83828 -11.66185 -11.26138 -11.15978 -10.99754 -10.96573 -10.84453 -10.45118 -10.35550 -10.17870 -9.96225 -9.94755 -9.65311 -9.02878 -8.86787 -8.63655 -8.61365 -6.90439 -5.75989 -3.04118 0.34888 1.16187 1.62561 2.18844 2.78362 3.07762 3.43770 3.49465 3.51658 4.37688 4.53887 4.58980 4.78276 4.88124 4.92014 4.98961 5.07521 5.13376 5.22606 5.24933 5.37475 5.44597 5.46884 5.54593 5.58090 5.62696 5.74861 5.79666 5.82210 5.93124 6.00048 6.00407 6.09911 6.15103 6.17407 6.23825 6.30064 6.38947 6.50626 6.69433 6.80660 6.92391 7.31018 7.71377 8.04384 8.43308 9.54507 10.12765 10.47354 11.47049 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.023680 B = 0.002696 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.138641 B =10384.444978 C =10595.170928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.078 4.078 3 C -0.029 4.029 4 C -0.141 4.141 5 C -0.243 4.243 6 S 0.210 5.790 7 C -0.262 4.262 8 C 0.592 3.408 9 O -0.529 6.529 10 N -0.601 5.601 11 C 0.112 3.888 12 C -0.124 4.124 13 C -0.094 4.094 14 C 0.159 3.841 15 N -0.732 5.732 16 C -0.238 4.238 17 H 0.070 0.930 18 C -0.015 4.015 19 N -0.933 5.933 20 Si 0.906 3.094 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.124 4.124 25 C 0.097 3.903 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.142 0.858 32 H 0.167 0.833 33 H 0.092 0.908 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.018 0.982 39 H 0.018 0.982 40 H 0.384 0.616 41 H 0.254 0.746 42 H 0.077 0.923 43 H 0.066 0.934 44 H 0.073 0.927 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.156 0.006 -22.980 26.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.117 4.117 3 C -0.044 4.044 4 C -0.173 4.173 5 C -0.380 4.380 6 S 0.479 5.521 7 C -0.382 4.382 8 C 0.379 3.621 9 O -0.408 6.408 10 N -0.334 5.334 11 C -0.009 4.009 12 C -0.162 4.162 13 C -0.113 4.113 14 C 0.031 3.969 15 N -0.376 5.376 16 C -0.369 4.369 17 H 0.088 0.912 18 C -0.211 4.211 19 N -0.582 5.582 20 Si 0.737 3.263 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.163 4.163 25 C -0.027 4.027 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.111 0.889 31 H 0.160 0.840 32 H 0.185 0.815 33 H 0.110 0.890 34 H 0.088 0.912 35 H 0.108 0.892 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.036 0.964 39 H 0.035 0.965 40 H 0.218 0.782 41 H 0.064 0.936 42 H 0.096 0.904 43 H 0.085 0.915 44 H 0.091 0.909 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 13.548 0.785 -21.953 25.809 hybrid contribution -1.050 -1.009 -0.330 1.493 sum 12.497 -0.223 -22.283 25.550 Atomic orbital electron populations 1.21689 0.94304 1.02057 1.01960 1.20444 0.96310 0.90896 1.04072 1.19425 0.97223 0.97241 0.90504 1.19881 1.03676 0.94167 0.99567 1.25322 1.08806 1.01459 1.02421 1.83219 1.60313 1.10436 0.98161 1.24395 1.16617 0.99517 0.97706 1.16970 0.77789 0.84516 0.82828 1.90793 1.53632 1.19053 1.77298 1.48044 1.56228 1.18455 1.10689 1.21677 0.97677 1.02028 0.79560 1.21844 0.93814 0.97222 1.03316 1.21317 0.98573 0.96946 0.94466 1.20659 0.91845 0.97535 0.86835 1.42382 1.07183 1.87356 1.00713 1.19273 0.86066 1.41101 0.90443 0.91226 1.24732 0.97139 1.02946 0.96251 1.69665 1.27344 1.56588 1.04648 0.86126 0.83706 0.77197 0.79234 1.20599 1.21884 1.21902 1.21887 0.94554 1.02568 0.97247 1.22077 0.95693 0.84394 1.00512 0.92630 0.92733 0.92034 0.90804 0.88887 0.83987 0.81517 0.88989 0.91209 0.89238 0.91816 0.90904 0.96399 0.96458 0.78242 0.93585 0.90429 0.91478 0.90896 0.89731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.89 37.16 0.37 -1.03 16 2 C -0.08 -0.80 5.92 -27.88 -0.17 -0.97 16 3 C -0.03 -0.31 5.16 -105.48 -0.54 -0.86 16 4 C -0.14 -1.20 9.96 -41.41 -0.41 -1.61 16 5 C -0.24 -1.84 10.92 29.18 0.32 -1.52 16 6 S 0.21 1.82 20.16 -107.50 -2.17 -0.35 16 7 C -0.26 -3.08 5.34 -36.79 -0.20 -3.27 16 8 C 0.59 8.39 7.28 -12.90 -0.09 8.30 16 9 O -0.53 -9.04 14.76 5.18 0.08 -8.96 16 10 N -0.60 -7.88 2.98 -174.61 -0.52 -8.40 16 11 C 0.11 1.56 6.41 -3.93 -0.03 1.54 16 12 C -0.12 -1.93 5.23 -26.83 -0.14 -2.07 16 13 C -0.09 -1.45 2.19 -90.57 -0.20 -1.65 16 14 C 0.16 3.13 5.65 -4.04 -0.02 3.11 16 15 N -0.73 -18.30 5.32 -59.90 -0.32 -18.62 16 16 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 17 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 18 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 19 N -0.93 -28.16 13.06 55.49 0.72 -27.44 16 20 Si 0.91 22.48 29.55 -169.99 -5.02 17.45 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 22 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 24 C -0.12 -1.51 5.36 -26.61 -0.14 -1.65 16 25 C 0.10 1.06 5.65 -3.71 -0.02 1.04 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 30 H 0.09 1.17 6.41 -51.93 -0.33 0.84 16 31 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 32 H 0.17 0.83 8.06 -52.49 -0.42 0.40 16 33 H 0.09 1.37 6.99 -51.93 -0.36 1.00 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.09 1.60 7.15 -51.93 -0.37 1.22 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.02 0.36 8.14 -51.92 -0.42 -0.06 16 39 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.38 9.99 6.84 -40.82 -0.28 9.71 16 41 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 42 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.08 0.82 4.60 -39.52 -0.18 0.64 16 LS Contribution 369.55 15.07 5.57 5.57 Total: -1.00 -32.33 369.55 -10.17 -42.51 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -6.99 Total: 6.22 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: -1.52 Total: -7.98 kcal Atomic # 7 Polarization: -54.34 SS G_CDS: -0.11 Total: -54.46 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.08 Total: -8.96 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.45 kcal Atomic # 16 Polarization: 1.82 SS G_CDS: -2.17 Total: -0.35 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.33 -10.17 -42.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206946454.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.171 kcal (2) G-P(sol) polarization free energy of solvation -32.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds