Wall clock time and date at job start Tue Mar 31 2020 13:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.46945 * 2 1 4 4 C 1.37472 * 123.35337 * 265.02096 * 3 2 1 5 5 C 1.33818 * 115.09966 * 179.73283 * 4 3 2 6 6 S 1.70610 * 110.95588 * 0.02562 * 5 4 3 7 7 C 1.36649 * 123.35058 * 84.73515 * 3 2 1 8 8 C 1.46582 * 125.45628 * 0.23983 * 7 3 2 9 9 O 1.21706 * 120.00208 * 42.01876 * 8 7 3 10 10 N 1.34775 * 120.00357 * 222.01386 * 8 7 3 11 11 C 1.46926 * 120.63577 * 185.51140 * 10 8 7 12 12 C 1.52758 * 109.01062 * 233.58858 * 11 10 8 13 13 C 1.53041 * 109.38230 * 305.58580 * 12 11 10 14 14 C 1.53003 * 109.45604 * 181.26065 * 13 12 11 15 15 N 1.46503 * 109.47006 * 64.93613 * 14 13 12 16 16 C 1.36936 * 119.99596 * 179.97438 * 15 14 13 17 17 H 1.08003 * 120.00572 * 0.02562 * 16 15 14 18 18 C 1.38810 * 119.99850 * 179.97438 * 16 15 14 19 19 N 1.31622 * 119.99969 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00176 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47090 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47454 * 120.00010 * 20 18 16 23 23 H 1.48500 * 109.47127 * 239.99915 * 20 18 16 24 24 C 1.53043 * 109.53490 * 61.24193 * 13 12 11 25 25 C 1.46929 * 120.62796 * 5.79705 * 10 8 7 26 26 H 1.09002 * 109.47124 * 300.00136 * 1 2 3 27 27 H 1.09006 * 109.47148 * 59.99499 * 1 2 3 28 28 H 1.08998 * 109.47717 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46497 * 240.00283 * 2 1 3 30 30 H 1.08997 * 109.47170 * 120.00229 * 2 1 3 31 31 H 1.07998 * 122.45151 * 359.76285 * 4 3 2 32 32 H 1.08002 * 124.51747 * 179.97438 * 5 4 3 33 33 H 1.08997 * 109.58416 * 353.42408 * 11 10 8 34 34 H 1.09001 * 109.58492 * 113.84641 * 11 10 8 35 35 H 1.09001 * 109.56053 * 185.55379 * 12 11 10 36 36 H 1.08993 * 109.36144 * 65.49926 * 12 11 10 37 37 H 1.09000 * 109.45941 * 301.22235 * 13 12 11 38 38 H 1.09008 * 109.46779 * 184.93230 * 14 13 12 39 39 H 1.08999 * 109.47061 * 304.93251 * 14 13 12 40 40 H 0.96998 * 120.00233 * 359.97438 * 15 14 13 41 41 H 0.97001 * 119.99695 * 179.97438 * 19 18 16 42 42 H 1.09005 * 109.49209 * 178.68092 * 24 13 12 43 43 H 1.08999 * 109.52308 * 58.60180 * 24 13 12 44 44 H 1.08996 * 109.58722 * 246.15438 * 25 10 8 45 45 H 1.09001 * 109.58502 * 6.43894 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3782 2.1002 -1.1440 5 6 2.7985 3.3562 -0.9531 6 16 2.7827 3.7597 0.7045 7 6 2.1839 2.1640 1.1366 8 6 1.8938 1.7045 2.4980 9 8 2.2196 0.5843 2.8446 10 7 1.2663 2.5226 3.3660 11 6 1.0757 2.1233 4.7671 12 6 -0.4052 2.2439 5.1218 13 6 -0.8910 3.6590 4.7996 14 6 -2.3662 3.7911 5.1835 15 7 -2.5073 3.6524 6.6351 16 6 -3.7456 3.7365 7.2137 17 1 -4.6182 3.9046 6.6000 18 6 -3.8794 3.6046 8.5890 19 7 -2.8161 3.3982 9.3369 20 14 -5.5686 3.7185 9.3784 21 1 -6.5913 3.9522 8.3274 22 1 -5.8695 2.4499 10.0891 23 1 -5.5878 4.8446 10.3462 24 6 -0.7280 3.9273 3.3017 25 6 0.7542 3.8282 2.9277 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8932 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 2.3148 1.6531 -2.1250 32 1 3.1075 4.0249 -1.7429 33 1 1.3989 1.0909 4.8999 34 1 1.6585 2.7772 5.4159 35 1 -0.5432 2.0451 6.1846 36 1 -0.9764 1.5216 4.5389 37 1 -0.3028 4.3823 5.3643 38 1 -2.7359 4.7688 4.8743 39 1 -2.9424 3.0108 4.6862 40 1 -1.7237 3.5011 7.1863 41 1 -2.9096 3.3064 10.2980 42 1 -1.0959 4.9267 3.0691 43 1 -1.2963 3.1894 2.7355 44 1 1.3102 4.6239 3.4234 45 1 0.8677 3.9212 1.8476 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206946454.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:03 Heat of formation + Delta-G solvation = -22.155146 kcal Electronic energy + Delta-G solvation = -25201.453527 eV Core-core repulsion = 21730.443996 eV Total energy + Delta-G solvation = -3471.009531 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.42640 -39.54481 -38.50783 -36.58922 -34.52869 -33.74890 -32.50503 -32.25682 -30.23988 -28.23406 -26.42936 -25.51200 -24.32386 -23.52050 -23.22864 -22.04222 -20.84563 -19.39228 -19.21795 -18.85458 -17.41025 -16.88702 -16.70120 -16.30459 -15.98840 -15.68256 -15.42397 -15.32274 -15.04798 -14.77763 -14.66158 -14.49046 -14.22383 -13.99275 -13.86713 -13.55838 -13.29300 -13.15967 -12.93666 -12.78907 -12.78015 -12.41417 -12.25426 -12.13350 -12.07368 -11.93746 -11.73186 -11.68215 -11.44467 -11.39999 -11.01667 -10.92350 -9.86861 -9.63086 -9.29182 -8.98285 -7.95062 -5.23172 -0.38971 0.43571 0.97481 1.45393 1.47058 1.47724 1.57766 1.79328 2.09863 2.56010 3.38579 3.46423 3.70261 3.82917 3.86376 3.88080 4.05099 4.13385 4.24617 4.30929 4.31697 4.40139 4.41742 4.48449 4.57042 4.69304 4.71949 4.73037 4.82914 4.87184 4.94868 4.97333 5.04193 5.06417 5.09237 5.13390 5.23964 5.25835 5.42425 5.46719 5.47982 5.51454 5.53963 6.27647 6.29037 6.99645 7.34240 8.11021 8.34241 9.28642 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.023680 B = 0.002696 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.138641 B =10384.444978 C =10595.170928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.079 4.079 3 C -0.031 4.031 4 C -0.153 4.153 5 C -0.225 4.225 6 S 0.238 5.762 7 C -0.304 4.304 8 C 0.589 3.411 9 O -0.572 6.572 10 N -0.602 5.602 11 C 0.119 3.881 12 C -0.114 4.114 13 C -0.083 4.083 14 C 0.158 3.842 15 N -0.744 5.744 16 C -0.244 4.244 17 H 0.074 0.926 18 C -0.076 4.076 19 N -0.969 5.969 20 Si 0.972 3.028 21 H -0.267 1.267 22 H -0.295 1.295 23 H -0.292 1.292 24 C -0.116 4.116 25 C 0.098 3.902 26 H 0.029 0.971 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.097 0.903 30 H 0.062 0.938 31 H 0.166 0.834 32 H 0.200 0.800 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.061 0.939 36 H 0.050 0.950 37 H 0.074 0.926 38 H 0.026 0.974 39 H 0.011 0.989 40 H 0.375 0.625 41 H 0.251 0.749 42 H 0.100 0.900 43 H 0.061 0.939 44 H 0.092 0.908 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.355 1.798 -25.904 29.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.118 4.118 3 C -0.047 4.047 4 C -0.183 4.183 5 C -0.362 4.362 6 S 0.507 5.493 7 C -0.424 4.424 8 C 0.378 3.622 9 O -0.453 6.453 10 N -0.334 5.334 11 C -0.003 4.003 12 C -0.153 4.153 13 C -0.102 4.102 14 C 0.031 3.969 15 N -0.387 5.387 16 C -0.376 4.376 17 H 0.092 0.908 18 C -0.268 4.268 19 N -0.620 5.620 20 Si 0.801 3.199 21 H -0.191 1.191 22 H -0.222 1.222 23 H -0.219 1.219 24 C -0.154 4.154 25 C -0.025 4.025 26 H 0.048 0.952 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.115 0.885 30 H 0.081 0.919 31 H 0.184 0.816 32 H 0.217 0.783 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.092 0.908 38 H 0.044 0.956 39 H 0.029 0.971 40 H 0.207 0.793 41 H 0.060 0.940 42 H 0.119 0.881 43 H 0.080 0.920 44 H 0.110 0.890 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 13.731 2.610 -24.926 28.577 hybrid contribution -1.088 -1.561 0.474 1.961 sum 12.644 1.049 -24.452 27.547 Atomic orbital electron populations 1.21643 0.94107 1.02310 1.01433 1.20431 0.96478 0.91253 1.03667 1.19669 0.96625 0.97169 0.91189 1.20057 1.04014 0.94529 0.99733 1.25761 1.06484 1.01433 1.02505 1.83060 1.59456 1.07907 0.98873 1.24277 1.19521 1.02078 0.96494 1.17389 0.77061 0.83932 0.83841 1.90761 1.55356 1.20864 1.78347 1.48107 1.56045 1.19208 1.10042 1.21481 0.96332 1.01643 0.80823 1.21682 0.95025 0.97322 1.01253 1.21205 0.95540 0.96467 0.96985 1.20823 0.94773 0.97366 0.83907 1.42594 1.06048 1.87224 1.02832 1.19662 0.87285 1.39749 0.90859 0.90837 1.25548 1.00706 1.03614 0.96945 1.69817 1.29369 1.58218 1.04552 0.85091 0.79824 0.76673 0.78292 1.19089 1.22200 1.21900 1.21834 0.95697 1.03687 0.94215 1.22244 0.94699 0.83636 1.01874 0.95162 0.91034 0.91486 0.88491 0.91924 0.81629 0.78262 0.90483 0.89960 0.92013 0.93139 0.90780 0.95634 0.97065 0.79255 0.94030 0.88133 0.92005 0.89016 0.87944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 9.89 71.98 0.71 -1.94 16 2 C -0.08 -1.60 5.92 29.85 0.18 -1.42 16 3 C -0.03 -0.62 5.16 -20.42 -0.11 -0.72 16 4 C -0.15 -2.09 9.96 21.08 0.21 -1.88 16 5 C -0.22 -2.47 10.92 66.81 0.73 -1.74 16 6 S 0.24 3.43 20.16 -56.49 -1.14 2.30 16 7 C -0.30 -6.83 5.34 24.08 0.13 -6.70 16 8 C 0.59 16.98 7.28 86.42 0.63 17.61 16 9 O -0.57 -20.63 14.76 -4.37 -0.06 -20.70 16 10 N -0.60 -15.71 2.98 -824.56 -2.46 -18.16 16 11 C 0.12 3.45 6.41 86.22 0.55 4.00 16 12 C -0.11 -3.73 5.23 30.53 0.16 -3.57 16 13 C -0.08 -2.54 2.19 -10.76 -0.02 -2.56 16 14 C 0.16 6.20 5.65 86.38 0.49 6.69 16 15 N -0.74 -37.80 5.32 -343.43 -1.83 -39.63 16 16 C -0.24 -13.73 9.99 84.03 0.84 -12.89 16 17 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 18 C -0.08 -4.40 5.50 84.86 0.47 -3.93 16 19 N -0.97 -59.60 13.06 21.65 0.28 -59.32 16 20 Si 0.97 46.52 29.55 68.60 2.03 48.55 16 21 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 22 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 23 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 24 C -0.12 -2.63 5.36 30.67 0.16 -2.46 16 25 C 0.10 1.95 5.65 86.36 0.49 2.44 16 26 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 28 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.10 1.45 8.12 -2.39 -0.02 1.43 16 30 H 0.06 1.66 6.41 -2.39 -0.02 1.65 16 31 H 0.17 1.43 8.06 -2.91 -0.02 1.41 16 32 H 0.20 0.88 8.06 -2.91 -0.02 0.86 16 33 H 0.08 2.46 6.99 -2.39 -0.02 2.44 16 34 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.06 2.35 7.15 -2.39 -0.02 2.33 16 36 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.03 0.99 8.14 -2.38 -0.02 0.97 16 39 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.37 20.13 6.84 -92.71 -0.63 19.50 16 41 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 42 H 0.10 1.88 8.14 -2.38 -0.02 1.86 16 43 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.10 1.73 4.60 -10.28 -0.05 1.68 16 Total: -1.00 -71.91 369.55 2.76 -69.15 By element: Atomic # 1 Polarization: 26.57 SS G_CDS: 0.32 Total: 26.89 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: 5.62 Total: -9.07 kcal Atomic # 7 Polarization: -113.12 SS G_CDS: -4.00 Total: -117.12 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.06 Total: -20.70 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal Atomic # 16 Polarization: 3.43 SS G_CDS: -1.14 Total: 2.30 kcal Total: -71.91 2.76 -69.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206946454.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.999 kcal (2) G-P(sol) polarization free energy of solvation -71.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds